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    <title>
      <![CDATA[  the cedar ledge  ]]>
    </title>
    <link> https://jacobzelko.com </link>
    <description>
      <![CDATA[  Jacob S. Zelko&#39;s personal website  ]]>
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<item>
  <title>
    <![CDATA[  Thoughts on Forester: A Scientist&#39;s Zettelkasten  ]]>
  </title>
  <link> https://jacobzelko.com/05172024064639-forest-zettelkasten/index.html </link>
  <guid> https://jacobzelko.com/05172024064639-forest-zettelkasten/index.html </guid>
  <description>
    <![CDATA[  Some preliminary and early thoughts on Forester, a robust tool for scientists and mathematicians in developing and working with one&#39;s own Zettelkasten.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Thoughts on Forester: A Scientist&#39;s Zettelkasten</h1>
<p><strong>Date:</strong> May 17 2024</p>
<p><strong>Summary:</strong> Some preliminary and early thoughts on Forester, a robust tool for scientists and mathematicians in developing and working with one&#39;s own Zettelkasten.</p>
<p><strong>Keywords:</strong> #blog #forester #sterling #zettelkasten #tool #thought #open #source #note #archive</p>
<h1>Bibliography</h1>
<p>Jon Sterling. Forester. <a href="https://github.com/jonsterling/ocaml-forester">https://github.com/jonsterling/ocaml-forester</a></p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Transclusions Done Right</li><li>Overall Impressions</li><li>Developing a Forester Workflow</li><li>Thoughts for Now</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>In discussion with my friend and mentor, <a href="https://jacobzelko.com/05192024173906-evan-patterson">Dr. Evan Patterson</a>, I was introduced to a tool created by Dr. Jon Sterling called Forester. These are some of my early thoughts on trying out Forester for my own research and workflow.</p>
<h3 id="transclusions_done_right">Transclusions Done Right</h3>
<p>In my mind, it feels to me that Forester really nailed how transclusions should work in a Zettelkasten type of workflow. In my mind, it is the perfect ambient environment for quickly building and stringing ideas together in coherent and yet atomic ways. Here&#39;s an example of it in action:</p>
<p><img src="https://jacobzelko.com/assets/05182024220110-forester-transclude.gif" alt="" /></p>
<blockquote>
<p><strong>Forester Transclusion:</strong> As one can see, the transclusion is snappy, encourages from its foundation the creation of small pieces of information as different files, and is easy to put together.</p>
</blockquote>
<p>What I also didn&#39;t really highlight is that it has great support for various kinds of backlinks that I haven&#39;t really had a chance to explore yet. I think backlinking is another crucial element of Zettelkastens and this is another thing that Forester&#39;s transclusion approach got right. Finally, I haven&#39;t tested this yet, but apparently handling of citations via \(\mathbf{BibTeX}\) and some of Forester&#39;s unique markup syntax enables citations to get rendered &quot;automatically&quot; between transcluded notes meaning that I would personally not have to worry about creating a bibliography for a note that has several transclusions in it as long as the source notes themselves have the relevant and needed citations.</p>
<h3 id="overall_impressions">Overall Impressions</h3>
<p>I played around with Forester for several hours and had quite some fun with the tool. The syntax was relatively straightforward to pick up thanks to the <a href="https://www.jonmsterling.com/jms-007N.xml">published markup syntax guide</a> and a <a href="https://forest.localcharts.org/lc-0002.xml">nice write-up from Owen Lynch</a>. It wraps around HTML elements using a strange combination of XML and XSTL – interestingly, the tool itself was written in OCaml and this served as my first introduction to ML-style languages. Here&#39;s an example of the mark-up which is, quite pointedly, called <code>tree</code> files:</p>
<pre><code class="language-julia">\title&#123;Jacob S. Zelko Personal Details&#125;
\taxon&#123;bio&#125;
\date&#123;2024-05-16&#125;
\import&#123;macros&#125;\&lt;html:div&gt;&#91;style&#93;&#123;
  width: 50\&#37;; 
  height: 400px; 
  background-image: url&#40;&#39;jz.jpg&#39;&#41;; 
  background-size: contain; 
  background-repeat: no-repeat;
&#125;&#123;&#125;\p&#123;&#125;\p&#123;
  My name is Jacob Scott Zelko&#33; 
  I am currently pursuing my MS in Applied Mathematics at Northeastern University &#40;NEU&#41; 
  and am a trainee of NEU&#39;s Roux Institute.
&#125;</code></pre>
<p>As one can see, the syntax is relatively straightforward &#40;although I had to do an &quot;ugly&quot; hack to get image rendering to work&#41;. It feels very \(\LaTeX\)-ish in the sense that all the curly braces have come back – with a vengeance&#33; One is able to create their own macros similar to how you can in various programming languages as well as within \(\LaTeX\) and inject HTML directly into your documents similar to how you can with Markdown. In fact, to me, it feels a hybrid between Markdown and \(\LaTeX\) Although the syntax is a bit gnarly, where it really shines is it&#39;s handling of mathematical notation directly in your browser. Thanks to a macro and <code>sty</code> file Owen created for the platform, <a href="https://forest.localcharts.org">LocalCharts</a>, I can readily render and draw commutative diagrams simply and easily directly within my notes:</p>
<pre><code class="language-julia">\p&#123;
  \quiver&#123;    \begin&#123;tikzcd&#125;
      &amp;&amp; X \\
      \\
      A &amp;&amp; &#123;A \times B&#125; &amp;&amp; B
      \arrow&#91;&quot;&#123;p_1&#125;&quot;&#39;, from&#61;1-3, to&#61;3-1&#93;
      \arrow&#91;&quot;u&quot;&#39;, dashed, from&#61;1-3, to&#61;3-3&#93;
      \arrow&#91;&quot;&#123;p_2&#125;&quot;, from&#61;1-3, to&#61;3-5&#93;
      \arrow&#91;&quot;&#123;\pi_1&#125;&quot;&#39;, from&#61;3-3, to&#61;3-1&#93;
      \arrow&#91;&quot;&#123;\pi_2&#125;&quot;&#39;, from&#61;3-3, to&#61;3-5&#93;
    \end&#123;tikzcd&#125;  &#125;
&#125;</code></pre>
<blockquote>
<p>Note: the macro <code>quiver</code> is what allows me to create this <code>tikzcd</code> diagram directly in my notes. Aside from the <code>p</code> and <code>quiver</code> notation, the commutative diagram <code>tikz</code> code I wrote here is strictly \(\LaTeX\) – finally, full Tikz support in the browser and easily done too&#33;</p>
</blockquote>
<p>One thing that I should also mention is the first rate support Forester does have for mathematics typesetting. Out of the box, it supports most of \(\LaTeX\) math formatting and enables one to quickly and easily render mathematics equations or notation where necessary. To my understanding, it&#39;s way of rendering is much richer than MathJax or \(\KaTeX\) but I am unsure of all the internals of how the math is rendered.</p>
<h3 id="developing_a_forester_workflow">Developing a Forester Workflow</h3>
<p>As Forester is still quite new, it is understandable if the workflow isn&#39;t quite sorted yet. I personally felt that this was one of the more underdeveloped aspects of the Forester ecosystem. After reviewing available tools, I settled on this approach:</p>
<ul>
<li><p><strong>Writing</strong>: using my <a href="https://github.com/TheCedarPrince/Service">Neovim configuration</a> to write notes quickly.</p>
</li>
<li><p><strong>Live Updates</strong>: <a href="https://github.com/kentookura">Kento Okura</a> created a really nice Forester tool called &quot;<a href="https://github.com/kentookura/forest-server">forest-server</a>&quot; in Rust that allows previews and builds to happen instantly.</p>
</li>
<li><p><strong>Preview</strong>: I use the <a href="https://vivaldi.com">Vivaldi browser</a> to do a live preview of my notes changing and updating in real time.</p>
</li>
</ul>
<p>Here&#39;s an example of the workflow in action:</p>
<p><img src="https://jacobzelko.com/assets/05192024172349-forester-preview.gif" alt="" /></p>
<p>The key command here I use is the function <code>forest watch 1234 -- &quot;build forest.toml&quot;</code> in the base of my &quot;forest&quot;. As I save my file, the command to build the forest is triggered and updates the note rather quickly. There is some flashing going on with the updating that I do not know how to fix – can be a bit jarring but is mostly fine.</p>
<h3 id="thoughts_for_now">Thoughts for Now</h3>
<p>Although I quite like Forester, I am a bit hesitant to transfer over to it myself for all my Zettelkasten needs. One of the biggest reasons for this is that my own Zettelkasten at this point has nearly \(600\) notes all written in markdown. To translate them over, I could write a parser for <a href="https://jacobzelko.com/NoteMate.jl/dev/">NoteMate.jl</a> that would allow ready translation from my <a href="04172022033744-open-knowledge-standard.md">note style</a> to a <code>tree</code> file.</p>
<p>Additionally, there are a few features that I feel just aren&#39;t quite &quot;there yet&quot;. Particularly, the following:</p>
<ul>
<li><p>The syntax for <code>tree</code> files, although a great start, is missing some things I find important. This includes more ergonomic syntax for including images, code blocks, quote blocks, etc. that I rely on within markdown.</p>
</li>
<li><p>The wrapping around HTML elements doesn&#39;t feel quite complete. As an example, to include an image on a page, I can write something like <code>\&lt;html:img&gt;&#91;src&#93;&#123;photo.png&#125;</code> which is easy enough. But what if I want to inject more attributes to the HTML element here, such as the <code>max-width</code> of the image? That was not clear to me in my readings of the source code and syntax reference.</p>
</li>
<li><p>Although I thought that the transclusion methods of Forester by default are great, it does not appear to me how one can reference sections of a note via transclusion. For example, within my markdown set-up, not only can I reference other notes, I can also link to the direct section within a particular note. I have not seen any such &quot;section referencing&quot; capabilities available in Forester if I just want to transclude &quot;part&quot; of a note.</p>
</li>
<li><p>Lack of interoperability with other note types or note systems. As I mentioned, I still have \(\approx 600\) markdown notes within my personal Zettelkasten so being able to go between other note types is crucial. What&#39;s more, related to this problem, is that markdown or \(\LaTeX\) is far more ubiquitous and accessible across multiple platforms if I need to preview or reference something on the spot. I haven&#39;t yet seen this available with <code>tree</code> files yet. </p>
</li>
</ul>
<p>With that all to say, if I had started my personal Zettelkasten journey with Forester, I think I probably would&#39;ve figured out ways to get around all these issues. As of now, these issues prevent me from wanting to move my entire Zettelkasten over to the system.</p>
<p>However, with that said, I think I actually will try giving Forester more of a test with some of my mathematics studies and research. It&#39;s first rate support for mathematics is superb and although the workflow is quite minimal at the time, while writing some notes in the <code>tree</code> files, I was beginning to see just how natural and ergonomic it was to write within the system. Depending on how things go with my experiments with Forester, I may end up having to write a parser of some kind in the near future&#33;</p>
<p>If you use or have used Forester, please let me know your experience with it and comment below – would love to hear about your experiences&#33;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Thoughts on Forester: A Scientist&#39;s Zettelkasten</em>. <a href="https://jacobzelko.com/05172024064639-forest-zettelkasten">https://jacobzelko.com/05172024064639-forest-zettelkasten</a>. May 17 2024.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Fri, 17 May 2024 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Category Theory  ]]>
  </title>
  <link> https://jacobzelko.com/01132024210133-category-theory-awodey/index.html </link>
  <guid> https://jacobzelko.com/01132024210133-category-theory-awodey/index.html </guid>
  <description>
    <![CDATA[  An introduction to category theory designed to help students with some mathematics knowledge  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Category Theory</h1>
<p><strong>Date:</strong> January 13 2024</p>
<p><strong>Summary:</strong> An introduction to category theory designed to help students with some mathematics knowledge</p>
<p><strong>Keywords:</strong> #category #theory #textbook #archive #introduction</p>
<h1>Bibliography</h1>
<p>S. Awodey, Category theory, vol. 52. OUP Oxford, 2010.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Chapters</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<h3 id="chapters">Chapters</h3>
<ul>
<li><p><a href="https://jacobzelko.com/01132024210326-what-category-theory">Chapter 1: Categories</a> - what is category theory?</p>
</li>
<li><p><a href="https://jacobzelko.com/04272024030435-abstract-structures-awodey">Chapter 2: Abstract Structures</a></p>
</li>
<li><p><a href="https://jacobzelko.com/04272024031824-duality-awodey">Chapter 3: Duality</a></p>
</li>
<li><p><a href="https://jacobzelko.com/04272024032015-groups-categories-awodey">Chapter 4: Groups and Categories</a></p>
</li>
<li><p><a href="https://jacobzelko.com/04272024162212-limits-colimits-awodey">Chapter 5: Limits and Colimits</a></p>
</li>
<li><p><a href="https://jacobzelko.com/04272024162247-exponentials-awodey">Chapter 6: Exponentials</a></p>
</li>
<li><p><a href="https://jacobzelko.com/04272024162317-naturality-awodey">Chapter 7: Naturality</a></p>
</li>
<li><p><a href="https://jacobzelko.com/04272024162401-categories-diagrams-awodey">Chapter 8: Categories of Diagrams</a></p>
</li>
<li><p><a href="https://jacobzelko.com/04272024162435-adjoints-awodey">Chapter 9: Adjoints</a></p>
</li>
<li><p><a href="https://jacobzelko.com/04272024162513-monads-algebras-awodey">Chapter 10: Monads and Algebras</a></p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Category Theory</em>. <a href="https://jacobzelko.com/01132024210133-category-theory-awodey">https://jacobzelko.com/01132024210133-category-theory-awodey</a>. January 13 2024.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 13 Jan 2024 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Early Impressions of Bluesky  ]]>
  </title>
  <link> https://jacobzelko.com/11242023193535-impressions-bluesky/index.html </link>
  <guid> https://jacobzelko.com/11242023193535-impressions-bluesky/index.html </guid>
  <description>
    <![CDATA[  Initial impressions on a few months of Bluesky usage  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Early Impressions of Bluesky</h1>
<p><strong>Date:</strong> November 24 2023</p>
<p><strong>Summary:</strong> Initial impressions on a few months of Bluesky usage</p>
<p><strong>Keywords:</strong> #social #media #bluesky #twitter #microblogging #blog #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Why Did I Start Using Bluesky?</li><li>Platform Impressions</li><li>Community Impressions</li><li>Feeds I Follow</li><li>People I Follow</li><li>Concluding Thoughts</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>It&#39;s been a few months now and I have some thoughts about Bluesky. Thought it might be fun to share and see what other folks think&#33;</p>
<h3 id="why_did_i_start_using_bluesky">Why Did I Start Using Bluesky?</h3>
<p>With the recent tailspin that Twitter &#40;X&#41; is experiencing, I decided it&#39;s time to explore other options for microblogging. I checked out Mastodon and just found the platform confusing and rather odd. I understand that everyone can run their own Mastodon instance – which is great&#33; – but struggled to find academic circles like I had on Twitter and also felt a bit unwelcome. Also, I really was looking for just a drop-in replacement for Twitter and Bluesky seemed the best option.</p>
<h3 id="platform_impressions">Platform Impressions</h3>
<p>Bluesky ticked off the most important criteria I had for finding a Twitter alternative: that it felt like Twitter. The UI feels very clean, I love the idea of feeds, and posting is easy. Importantly, my home page feels very much like how my Twitter feels. Plus, one of my old favorite tools from Twitter was Tweetdeck and it lives on in the tool, <a href="deck.blue/">deck.blue</a>.</p>
<h3 id="community_impressions">Community Impressions</h3>
<p>I&#39;ve been really pleasantly surprised by the academic Bluesky community&#33; Although it is much smaller than Twitter&#39;s community and I don&#39;t get as much &quot;likes&quot; perhaps as my posts on Twitter, I feel that my interactions on Bluesky are much more meaningful.</p>
<p>One recent example was where I made a post asking about developing a better academic writing habit in my life. On Twitter, although it was seen by a couple hundred people, I got only a few interactions from that. The same sort of question on Bluesky resulted in several interactions that actually resulted in helping me develop a better habit on this front.</p>
<p>Additionally, I feel like Bluesky is a lot less &quot;noisy&quot;. As Bluesky doesn&#39;t have a central algorithm that is spiking posts for whatever reason, you really only see what you want to see. It makes the entire enterprise feel much more genuine – authentic even.</p>
<h3 id="feeds_i_follow">Feeds I Follow</h3>
<p>As feeds are perhaps not as discoverable as finding certain hashtags in Twitter, here is a list of feeds I follow on Bluesky:</p>
<ul>
<li><p><a href="https://bsky.app/profile/did:plc:u66rqtgvzs2hamcia7oycpbi/feed/aaaly6fm3rj5q">Julia Programming</a></p>
</li>
<li><p><a href="https://bsky.app/profile/did:plc:jfhpnnst6flqway4eaeqzj2a/feed/for-science">General Science News</a></p>
</li>
<li><p><a href="https://bsky.app/profile/did:plc:4jb3re5tvklsvhuc3lkerj5q/feed/aaak6p5s2f3cu">Bluesky Academic Community</a></p>
</li>
<li><p><a href="https://bsky.app/profile/did:plc:xqbbs34shcevzm326a4rvftn/feed/aaabre5ak5ddi">Health Policy</a></p>
</li>
<li><p><a href="https://bsky.app/profile/did:plc:egtk4i4s3a2cykq3pa5nrkqr/feed/aaaarylo7rb2e">Public Health</a></p>
</li>
</ul>
<p>Oddly, I find following feeds is sufficient for me for the majority of cases. I am sure this won&#39;t be the same forever as more folks join Bluesky.</p>
<h3 id="people_i_follow">People I Follow</h3>
<p>Although Bluesky still is not as populous yet like Twitter, there are a few accounts I follow directly </p>
<ul>
<li><p><a href="https://bsky.app/profile/chrisrackauckas.bsky.social">Dr. Chris Rackauckas</a> – ordinary differential equations, open source/science, Julia programming, and numerical computing</p>
</li>
<li><p><a href="https://bsky.app/profile/brenhinkeller.bsky.social">Dr. Brenhin Keller</a> – geoscience, climate science, open source/science, Julia programming, and excellent meme game</p>
</li>
<li><p><a href="https://bsky.app/profile/kdpsingh.bsky.social">Dr. Karandeep Singh</a> – health informatics, research software engineering, Julia and R programming</p>
</li>
</ul>
<h3 id="concluding_thoughts">Concluding Thoughts</h3>
<p>I am deeply disappointed in what has happened to Twitter – I feel like a migration to another platform is unavoidable at this point. Bluesky is definitely not Twitter but it might actually be something better. In short, I am really enjoying my interactions on Bluesky, building a small community over there, and learning more from others.</p>
<p>I should say, if you like chatting about mathematics, open science and open source programming, and academia, let&#39;s connect on Bluesky&#33; Looking to make more friends and enrich my experience on the platform. My profile is: <a href="https://bsky.app/profile/thecedarprince.bsky.social">thecedarprince.bsky.social</a>. Talk more soon&#33;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Early Impressions of Bluesky</em>. <a href="https://jacobzelko.com/11242023193535-impressions-bluesky">https://jacobzelko.com/11242023193535-impressions-bluesky</a>. November 24 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 24 Nov 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Resources for Learning the Julia Programming Language  ]]>
  </title>
  <link> https://jacobzelko.com/10082023195125-julia-learning-resources/index.html </link>
  <guid> https://jacobzelko.com/10082023195125-julia-learning-resources/index.html </guid>
  <description>
    <![CDATA[  A non-exhaustive list of recommendations for how I suggest learning Julia to language newcomers  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Resources for Learning the Julia Programming Language</h1>
<p><strong>Date:</strong> October 8 2023</p>
<p><strong>Summary:</strong> A non-exhaustive list of recommendations for how I suggest learning Julia to language newcomers</p>
<p><strong>Keywords:</strong> #julia #programming #beginners #recommendations #learning #archive #blog</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Before Programming with Julia, Let&#39;s Set It Up</li><li>Julia Programming for New Programmers</li><li>Quickly Picking Up Julia Programming</li><li>What Is a Julian?</li><li>Building Up Expertise in Julia Programming</li><li>Domain Specific Workflows in Julia<ol><li>Working with Data</li><li>Plotting</li></ol></li><li>Conclusion</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>I saw an interesting post on <a href="https://bsky.app/profile/naturepoker.bsky.social/post/3kb7gi65xqm2a">BlueSky recently</a> that got me thinking about Julia learning resources. I tend to give out a lot of advice about how to go about learning Julia but I realized I have never really centralized one place where I keep that information. This blog post talks about my personal opinions both within the Julia ecosystem and recommendations for how to learn Julia.</p>
<h3 id="before_programming_with_julia_lets_set_it_up">Before Programming with Julia, Let&#39;s Set It Up</h3>
<p>The fantastic initiative, <a href="modernjuliaworkflows.github.io/">Modern Julia Workflows</a>, spearheaded by Guillaume Dalle and co has a number of sections that can help with getting set-up fast &#40;I&#39;ll be referring to their work quite a bit throughout this post&#41;. In particular, here are the sections I&#39;d recommend to get set-up fastest:</p>
<ol>
<li><p><a href="https://modernjuliaworkflows.github.io/pages/writing/#installation">How to install Julia on your computer</a></p>
</li>
<li><p><a href="https://modernjuliaworkflows.github.io/pages/writing/#installation">What you need to write Julia</a>. A special note on this from me is that you really do not need much – you could use something like NotePad on Windows, textedit on OSX, or KWrite on *nix systems. I like the stance Dalle takes in recommending VSCode however as this gives you the best mileage whether you are a beginner or expert programmer.</p>
</li>
</ol>
<p>Suggestion 2 here will most likely take you the longest if you have never worked with a text editor before &#40;a piece of software to create and edit most different types of files&#41;. So, no worries and enjoy the learning here&#33;</p>
<h3 id="julia_programming_for_new_programmers">Julia Programming for New Programmers</h3>
<p>If you are completely new to programming in general, I&#39;d recommend the course, <a href="https://juliaacademy.com/p/julia-programming-for-nervous-beginners">Julia Programming for Nervous Beginners</a>, by Dr. Henri Laurie. It really eases you through how to start with programming and uses Julia as that learning tool. Otherwise, skip to the next section.</p>
<h3 id="quickly_picking_up_julia_programming">Quickly Picking Up Julia Programming</h3>
<p>To pick up Julia programming, I recommend <a href="https://juliaacademy.com/p/intro-to-julia">Introduction to Julia &#40;for programmers&#41;</a> by Dr. Jane Herriman. This will get you going with Julia the fastest – especially if you already know some programming.</p>
<h3 id="what_is_a_julian">What Is a Julian?</h3>
<p>Before continuing your Julia adventure, it is worth a pause to discuss a couple aspects of Julia that one may not immediately recognize but are crucial in a productive Julia workflow. Otherwise, one may end up despairing over the supposed virtues of Julia. Here are some specific pieces:</p>
<ol>
<li><p>Julia is a REPL-centric workflow. If you are unfamiliar with what a REPL is, please see <a href="https://modernjuliaworkflows.github.io/pages/writing/writing/#repl">this reference for details</a> but in short, the Julia REPL is a continuous loop that accepts all valid inputs. From loading a file, experimenting with code, or calling functions, the REPL serves as a scratchpad to iteratively build your overall Julia software instantly.</p>
</li>
<li><p>Julia is compiled – packages and functions will take a moment to load for use. This builds on the previous point, but yes, as Julia is compiled, any package or function you want to use may execute slightly longer initially but then will be compiled for the duration of your work session. This is why you want your Julia workflow to be REPL-centric as you can get around this issue.</p>
</li>
<li><p>Julians organize Julia software into &quot;projects&quot; or packages. Whether you are writing a collection of small scripts to analyze some data or developing a completely new software package, to effectively maneuver through your Julia code, make liberal use of <a href="">Pkg.jl</a>.  Dalle has an excellent reference that talks about this concept of <a href="https://modernjuliaworkflows.github.io/pages/writing/writing/#local_packages">project environments</a> as well as how to build your own <a href="https://modernjuliaworkflows.github.io/pages/writing/writing/#local_packages">local package</a>.</p>
</li>
<li><p>Working within Julia can be extremely efficient – if you know how. This is a circular statement as it naturally raises the question of, &quot;how do I actually build a concrete Julia workflow?&quot; Thankfully, <a href="https://modernjuliaworkflows.github.io/pages/writing/writing/#development_workflow">much has been written about this</a></p>
</li>
<li><p>Julians want to help you. What is wonderful about the Julia community is that, in contrast to perhaps alternative internet communities, the bulk of Julians greatly enjoy helping not only other Julians but other programmers in general &#40;there has been numerous occasions where I have seen Julians help other language users become even more proficient in their workflows&#41;. This is an <a href="https://modernjuliaworkflows.github.io/pages/writing/writing/#getting_help">invaluable assortment</a> of where to find your fellow Julians.</p>
</li>
</ol>
<p>I hope this section does not come off as overtly prescriptive, but I have seen the notion of &quot;you are holding the tool wrong&quot; or &quot;what is Julian&quot; &#40;i.e. how do proficient Julia users do X&#41; pop up too many times for new Julians or those experimenting with the language. I hope with this nudging guidance here, a new Julian can more clearly understand the &quot;why&quot; of what other more proficient Julians recommend.</p>
<h3 id="building_up_expertise_in_julia_programming">Building Up Expertise in Julia Programming</h3>
<p>At this stage, we can now move from the beginner to intermediate Julian stage. Here, I think the world of Julia quite truly opens up to the new user. To delve deeper into Julia, here are some resources I would personally recommend:</p>
<ul>
<li><p>Believe it or not, the <a href="https://docs.julialang.org/">Julia documentation</a> is actually really nice to read and accessible. Now, I don&#39;t just say this as I have helped write some of it, but I do truly think it worth looking through to get a better feel for aspects of Julia one may not consider.  I would suggest starting with the Manual section of the documentation.</p>
</li>
<li><p>Check out the <a href="https://computationalthinking.mit.edu/Fall22/">MIT Computational Thinking Course</a> to have a more hands-on introduction to scientific computing. I have never personally gone through it, but I hear it highly praised.</p>
</li>
<li><p>Try solving problems on <a href="https://exercism.io/tracks/julia">Exercism.io</a> to practice and improve your skills.  I am a mentor here although don&#39;t have as much time anymore to help review. I still find this to be a really great place to further your learning and to get better at programming Julia – you&#39;ll often get feedback from expert Julia users which, in itself, is extremely valuable.</p>
</li>
</ul>
<h3 id="domain_specific_workflows_in_julia">Domain Specific Workflows in Julia</h3>
<p>I will probably spin out the following sub-sections into their own blogs, but here are some selected domain specific workflows I have used or become familiar with that I use regularly within Julia.</p>
<h4 id="working_with_data">Working with Data</h4>
<p>This admittedly broad workflow encompasses much, but the most important packages in this space are:</p>
<ul>
<li><p><a href="https://dataframes.juliadata.org/stable/">DataFrames.jl</a>: This package provides a powerful data manipulation and analysis tool for Julia, similar to the pandas library in Python. </p>
<ul>
<li><p>Additionally, the author of the package, Bogumił Kamiński, is an extremely prolific blogger who shares many different ways of using DataFrames.jl.</p>
</li>
</ul>
</li>
</ul>
<p>I highly suggest <a href="https://bkamins.github.io">his blog</a>. </p>
<ul>
<li><p><a href="https://csv.juliadata.org/stable/">CSV.jl</a>: Utility library for working with CSV and other delimited files in the Julia programming language</p>
</li>
<li><p><a href="https://github.com/ronisbr/TerminalPager.jl">TerminalPager.jl</a>: a REPL-based Julia variable and documentation explorer</p>
</li>
</ul>
<h4 id="plotting">Plotting</h4>
<p>When I first started within Julia, this was the only area I felt that was sorely lacking within the ecosystem. However, I am happy to say that this is no longer the case&#33; In my mind, the best Julia plotting package is <a href="https://makie.org">Makie.jl</a>. It is an interactive data visualization and plotting ecosystem that has support for multiple backends ranging from publication quality static images, 3D images, to fully interactive plots and visualizations. I use it whenever I can.</p>
<h3 id="conclusion">Conclusion</h3>
<blockquote>
<p><strong>NOTE:</strong> This blog post is a continuous work in progress.</p>
</blockquote>
<p>As this blog post is a continuous work in progress, please feel free to comment below on questions about how I could improve it or explain more. That said, my goal with this blog post was not to cover every aspect of the Julia ecosystem but how to quickly go from knowing nothing about programming to becoming a self-sufficient Julian. May this concise guide help you in your way to achieving all that you want within Julia.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Resources for Learning the Julia Programming Language</em>. <a href="https://jacobzelko.com/10082023195125-julia-learning-resources">https://jacobzelko.com/10082023195125-julia-learning-resources</a>. October 8 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 08 Oct 2023 00:00:00 +0000</pubDate>  
  
  
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  <title>
    <![CDATA[  Step by Step Guide to Moving Your GitHub Repository to a GitHub Organization  ]]>
  </title>
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  <guid> https://jacobzelko.com/08232023150902-moving-repository-organization/index.html </guid>
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    <![CDATA[  How to move your GitHub repository into a GitHub organization  ]]>
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<h1>Step by Step Guide to Moving Your GitHub Repository to a GitHub Organization</h1>
<p><strong>Date:</strong> August 23 2023</p>
<p><strong>Summary:</strong> How to move your GitHub repository into a GitHub organization</p>
<p><strong>Keywords:</strong> #github #organization #repository #permissions #git #blog #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Steps for Organization Owner<ol><li>Optional Step: Transfer Repository Back to Owner</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3>Motivation</h3>
<p>As I am the head of a few GitHub organizations now, I figured it would be useful to have a nice step by step guide for helping individuals move their repositories into organizations that I help manage.</p>
<h3>Assumptions</h3>
<p>The following assumptions are made in this tutorial:</p>
<ol>
<li><p>You have a GitHub profile</p>
</li>
<li><p>You have a repository you wish to transfer</p>
</li>
<li><p>The GitHub organization you wish to transfer the repository to is called &quot;JuliaHealth&quot;</p>
</li>
</ol>
<h3>Steps for the Repository Owner</h3>
<ol>
<li><p>Initiate the Transfer</p>
<p>a. Log in to your GitHub account.</p>
<p>b. Open the repository you want to transfer</p>
<p>c. Click on &quot;Settings&quot; and then select &quot;Options&quot; from the left sidebar.</p>
<p>d. Scroll down to the &quot;Danger Zone&quot; section and click &quot;Transfer Ownership.&quot;</p>
<p>e. Confirm by entering your password.</p>
<p>f. Choose &quot;JuliaHealth&quot; from the dropdown.</p>
<p>g. Click &quot;I understand, transfer this repository.&quot;</p>
</li>
<li><p>Verify Repository Transfer</p>
<p>a. Go to the <a href="https://github.com/JuliaHealth">JuliaHealth GitHub organization home page</a></p>
<p>b. You should see the repository on the home page</p>
</li>
</ol>
<p>At this stage, let the Organization admins know that the repository is transferred to the organization. If there were any issues, reach out to JuliaHealth admins for help here.</p>
<h3 id="steps_for_organization_owner">Steps for Organization Owner</h3>
<ol>
<li><p>Adjust transferred repository permissions to allow owners full permission to repository</p>
<p>a. Open the transferred repository within your organization.</p>
<p>b. Navigate to &quot;Settings.&quot;</p>
<p>c. Click on &quot;Manage access.&quot;</p>
<p>d. Add the original owner&#39;s GitHub account as a collaborator or provide them with the necessary access.</p>
</li>
<li><p>Inform the original repository owner of permissions</p>
</li>
</ol>
<h4 id="optional_step_transfer_repository_back_to_owner">Optional Step: Transfer Repository Back to Owner</h4>
<p>If the original owner wants to remove the repository from the organization:</p>
<ol>
<li><p>Go to the repository&#39;s &quot;Settings&quot; within the organization.</p>
</li>
<li><p>Scroll down to the &quot;Danger Zone&quot; section and click &quot;Transfer Ownership.&quot;</p>
</li>
<li><p>Opt to transfer the repository back to their personal account.</p>
</li>
</ol>
<p>Additionally, depending on the permissions given by the Organization admins, the repository owners may be able to transfer the package back to themselves as well at any time.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Step by Step Guide to Moving Your GitHub Repository to a GitHub Organization</em>. <a href="https://jacobzelko.com/08232023150902-moving-repository-organization">https://jacobzelko.com/08232023150902-moving-repository-organization</a>. August 23 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Wed, 23 Aug 2023 00:00:00 +0000</pubDate>  
  
  
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    <![CDATA[  What Is Jevons Paradox?  ]]>
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  <link> https://jacobzelko.com/08112023144820-jevons-paradox-explained/index.html </link>
  <guid> https://jacobzelko.com/08112023144820-jevons-paradox-explained/index.html </guid>
  <description>
    <![CDATA[  An overview of Jevon&#39;s Paradox and selected examples  ]]>
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<h1>What Is Jevons Paradox?</h1>
<p><strong>Date:</strong> August 11 2023</p>
<p><strong>Summary:</strong> An overview of Jevon&#39;s Paradox and selected examples</p>
<p><strong>Keywords:</strong> #economics #climate #paradox #overview #archive</p>
<h1>Bibliography</h1>
<p>&quot;Jevons paradox,&quot; Wikipedia. Jul. 05, 2023. Accessed: Aug. 11, 2023. &#91;Online&#93;. Available: https://en.wikipedia.org/w/index.php?title&#61;Jevons_paradox&amp;oldid&#61;1163586515</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Overview</li><li>Examples</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>I first came across this paradox within high school history courses. It never left my mind as I found it such a bizarre and counter-intuitive result that had great implications when trying to help or improve situations. In a way, it has been a guiding principle in my life to think through interventions.</p>
<h3 id="overview">Overview</h3>
<blockquote>
<p>When technological progress or government policy increases efficiency of resource usage, but the falling cost of this resource results in increases of its usage, rather than a reduction. bauerBookReviewPerspectives2009?, yorkUnderstandingJevonsParadox2016?</p>
</blockquote>
<p>Put more plainly, the paradox emerges when you improve the efficiency of a resource to decrease its use but instead, the improved efficiency increases the demand of the resource.</p>
<h3 id="examples">Examples</h3>
<p>The most canonical example comes from environmental economics wherein a city with a vehicle traffic problem wants to reduce traffic in their city. To remedy this problem, they think that increasing the number of lanes in their main city highway will reduce traffic. So, they build additional lanes. But rather than improve traffic, traffic becomes even worse as a result of more people wanting to drive through the city. schneiderCityLabUniversityInduced2018?</p>
<p>Where Jevons first observed this was in the mid-1800&#39;s. He saw that when James Watt created a steam engine that greatly improved the efficiency of coal-ran steam engines, it made using coal very cost effective. As a result, Jevons observed that the use of coal, rather than staying the same or going down, increased as people wanted to use coal more often. jevonsCoalQuestionInquiry1866? Thus, the inception of Jevons Paradox. </p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Is Jevons Paradox?</em>. <a href="https://jacobzelko.com/08112023144820-jevons-paradox-explained">https://jacobzelko.com/08112023144820-jevons-paradox-explained</a>. August 11 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 11 Aug 2023 00:00:00 +0000</pubDate>  
  
  
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    <![CDATA[  Lessons Learned from How I Use Anki  ]]>
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  <link> https://jacobzelko.com/07092023212334-how-i-anki/index.html </link>
  <guid> https://jacobzelko.com/07092023212334-how-i-anki/index.html </guid>
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    <![CDATA[  Some insights into how I use Anki and suggestions on how to get started  ]]>
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<h1>Lessons Learned from How I Use Anki</h1>
<p><strong>Date:</strong> July 9 2023</p>
<p><strong>Summary:</strong> Some insights into how I use Anki and suggestions on how to get started</p>
<p><strong>Keywords:</strong> #anki #blog #archive #anki #spaced #repetition #learning</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>How To Get Started with Anki</li><li>Effective Anki Philosophies</li><li>Other Personal Strategies<ol><li>What about Add-Ons?</li></ol></li><li>Advanced Techniques<ol><li>Incremental Understanding</li><li>Anki for Mathematics?</li></ol></li><li>Concluding Thoughts</li><li>Footnotes</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>Recently, I was sharing with a few online communities &#40;namely the Neorg and Anki Discord Servers&#41; my success with Anki. I was somewhat surprised at how many people were both curious and excited about what I was up to and how I was learning things with Anki. After writing up some advice across the servers, I decided it best to coalesce my thoughts here on how I use Anki for mathematics, languages, and incremental reading.</p>
<h3 id="how_to_get_started_with_anki">How To Get Started with Anki</h3>
<p><a href="https://apps.ankiweb.net/">Anki is perhaps one of the greatest learning tools made</a>. To quickly summarize, Anki is a software for creating digital flashcards and then quizzes you throughout the day, everyday on cards according to how well you can recall each card.  To get started with Anki, here are some tips I would give to myself if I had to start over again and to anyone curious about getting started with Anki:</p>
<ul>
<li><p><strong>Skim the official Anki documentation</strong>: Familiarize yourself with Anki&#39;s features and functionalities by skimming through the official Anki documentation available at <a href="https://docs.ankiweb.net/getting-started.html">Anki Getting Started</a>. &#40;Another good reference, although unofficial and may become outdated, is: <a href="https://leananki.com/how-to-use-anki-tutorial/">How to Use Anki</a> by Lean Anki&#41;.</p>
</li>
<li><p><strong>Start with simple cards</strong>: Begin your Anki journey by creating straightforward flashcards to ensure better comprehension and recall.</p>
</li>
</ul>
<p>The basic and cloze default templates are great to use and cover a wide range of use cases you may have.</p>
<ul>
<li><p><strong>Gradually increase the number of new cards per day</strong>: I would not recommend several new cards a day as you get started.</p>
</li>
</ul>
<p>If you start with 100 new cards on day one, that means the next day you would have to study 100 new cards AND 100 reviews of your day old new cards at minimum. In practice, this will hike up your number of reviews between the two days to well over 300 cards potentially.</p>
<ul>
<li><p><strong>Using Pre-made decks is OK</strong>: If you are unsure about how to make decks or are low on time, you can <a href="https://ankiweb.net/shared/decks/">use pre-made decks</a></p>
</li>
<li><p><strong>Learning deck options can be quite helpful...</strong>: In particular, settings like <a href="https://docs.ankiweb.net/deck-options.html">Daily Limits, Display Order, Timer, and Subdecks</a> are worth learning about as a beginner.</p>
</li>
</ul>
<p>This can help prevent feeling overwhelmed.</p>
<ul>
<li><p><strong>...but, Stick with the default algorithm settings</strong>: Avoid unnecessary tinkering and utilize Anki&#39;s default algorithm, which is designed for optimal card review timing.</p>
</li>
</ul>
<p>These are Deck Options like New Cards, Lapses, or other Advanced fields and scheduling. <sup id="fnref:1">[1]</sup></p>
<p>To emphasize the last point, while there are numerous Anki resources offering &quot;best settings for success&quot; such as on YouTube or blog posts &#40;even this one – go do Anki&#33;&#41;, be cautious not to get caught up in <a href="https://calebschoepp.com/blog/2022/productivity-porn/">&quot;productivity porn&quot;</a>.  Focus on consistent usage of Anki and trust in the effectiveness of the default scheduler and most of the review settings. </p>
<h3 id="effective_anki_philosophies">Effective Anki Philosophies</h3>
<p>These are philosophies I have found useful when I work with Anki. Feel free to incorporate, ignore, or use them:</p>
<ul>
<li><p><strong>Add content you want to learn</strong>: Only add content to Anki you truly, genuinely want to learn – ask yourself, &quot;Am I comfortable with reviewing this content over the next year?&quot;</p>
</li>
</ul>
<p>If you even hesitate a moment, <strong>DO NOT ADD IT</strong>. <sup id="fnref:2">[2]</sup></p>
<ul>
<li><p><strong>When you have dead time...</strong>: Waiting in a line for a tea at a cafe?</p>
</li>
</ul>
<p>Review Anki. Have a break between a PvP session while playing Destiny 2? Review Anki. Stationary biking at the gym? Review Anki.</p>
<ul>
<li><p><strong>One card, one fact</strong>: Keep one fact per review card you make.</p>
</li>
<li><p><strong>Follow the 20 principles of knowledge formulation</strong>: Read the <a href="https://supermemo.guru/wiki/20_rules_of_knowledge_formulation">20 Rules of Knowledge Formulation</a>.</p>
</li>
</ul>
<p>Learn, live, ~~loathe~~ love it.</p>
<ul>
<li><p><strong><a href="https://www.youtube.com/watch?v&#61;C-m3RtoguAQ">&quot;I... Declare... Bankruptcy&#33;&#33;&#33;&quot; – Michael Scott, King of Anki</a></strong>: If you are feeling overwhelmed by how many reviews you have to do each day, it is alright to declare what I call &quot;Anki Bankruptcy&quot; and temporarily stop adding new cards to review each day.</p>
</li>
</ul>
<p>Do this until you feel more motivated or your review count is back to a comfortable level. <sup id="fnref:3">[3]</sup></p>
<h3 id="other_personal_strategies">Other Personal Strategies</h3>
<p>These are my highly personal review strategies. They may be wrong, but they help me consistently manage all my Anki reviews:</p>
<ul>
<li><p><strong>Embrace a simplified review process</strong>: Streamline your card reviews by focusing solely on the &quot;good&quot; or &quot;again&quot; key, simplifying decision-making and promoting efficient learning.<sup id="fnref:4">[4]</sup></p>
</li>
<li><p><strong>Prioritize well-being and take breaks</strong>: Ensure your physical and mental well-being by prioritizing breaks and engaging in activities that rejuvenate you.</p>
</li>
<li><p><strong>Adjust Deck Settings</strong>: Create different deck profiles, such as &quot;Hard Studies&quot; for challenging subjects or &quot;No New Cards&quot; when you need a temporary break.</p>
</li>
<li><p><strong>Regularly review statistics</strong>: I monitor my progress by reviewing Anki&#39;s statistics every day.</p>
</li>
</ul>
<p>This helps me track performance and if I may need to reduce or increase the intensity of my recent Anki sessions.</p>
<ul>
<li><p><strong>Organize with decks and subdecks</strong>: I categorize my flashcards into decks and subdecks based on subjects or topics of interest broadly.</p>
</li>
</ul>
<h4 id="what_about_add-ons">What about Add-Ons?</h4>
<p>I do use a couple Anki Add-ons&#33; I tend to more focus on aesthetics and statistics for my Anki set-up. Here are some that I always use:</p>
<ul>
<li><p><a href="https://ankiweb.net/shared/info/308574457">Anki-redesign</a> - A new lightweight look for Anki</p>
</li>
<li><p><a href="https://ankiweb.net/shared/info/738807903">More Overview Stats 2.1</a> - This addon adds more information to the deck overview statistics.</p>
</li>
<li><p><a href="https://ankiweb.net/shared/info/1556734708">More Decks Stats and Time Left</a> - This addon shows extra information of the due cards and returns the expected time to finalize &#40;Due&#43;New&#41;.</p>
</li>
<li><p><a href="https://ankiweb.net/shared/info/1771074083">Review Heatmap</a> - Adds a heatmap graph to Anki&#39;s main window which visualizes past and future card review activity.</p>
</li>
</ul>
<h3 id="advanced_techniques">Advanced Techniques</h3>
<p>These are advanced techniques that I am experimenting with. Reader be warned&#33;</p>
<h4 id="incremental_understanding">Incremental Understanding</h4>
<p>I didn&#39;t find Anki particularly well-suited for <a href="https://www.wikiwand.com/en/Incremental_reading">Incremental Reading</a> and instead created an iterative process I call &quot;Incremental Understanding&quot;. What the process entails is this:</p>
<ol>
<li><p>I pull content from what I read such as a paragraph or a few lines.</p>
</li>
<li><p>For each chunk of information, I add that to a card that only has three sections: the content, associated thoughts, and their reference.</p>
</li>
<li><p>As I review each of these cards, I edit them into my own language. &#40;I max out how much I spend on each card per review to 3 minutes&#41;</p>
</li>
<li><p>I repeat steps 1 - 3, until each card I feel is sufficiently described in my own language and then I suspend and tag the card for transfer into my personal notes.</p>
</li>
<li><p>For each note that is tagged for transfer, I then move and stitch them into my personal notes</p>
</li>
</ol>
<p>To make steps 3 and 4 easier, I use the <a href="https://ankiweb.net/shared/info/1429363228">Tag Toggler Add On</a>. For 5, this is an intentionally manual process that, although labor intensive, forces me to think how this new content fits into my knowledge base and any existing notes I have.</p>
<h4 id="anki_for_mathematics">Anki for Mathematics?</h4>
<p>It&#39;s an evolving process, but I have written a <a href="https://jacobzelko.com/01072023041127-making-math-anki/">separate dedicated blog post</a> dedicated to the processes I have been developing for this.</p>
<h3 id="concluding_thoughts">Concluding Thoughts</h3>
<p>I hope this small guide on getting started with and using Anki was helpful&#33; Again, these are my own personal notes and takes on how to use the tool. To that end, if you have any suggestions, thoughts, or feedback, please let me know&#33;</p>
<h3 id="footnotes">Footnotes</h3>
<p><table class="fndef" id="fndef:1">
    <tr>
        <td class="fndef-backref">[1]</td>
        <td class="fndef-content">Even for me, I do not mess around with the default algorithm much at all. I find it does a great job as is and I have only recently even thought about messing around with the <a href="https://github.com/open-spaced-repetition/fsrs4anki/wiki">FSRS algorithm</a>.</td>
    </tr>
</table>
 <table class="fndef" id="fndef:2">
    <tr>
        <td class="fndef-backref">[2]</td>
        <td class="fndef-content">If you are not careful, you can create &quot;Anki Anxiety&quot; where, instead of being excited about learning something via Anki, you dread the reviews you have to do every day for information you are not too excited about.</td>
    </tr>
</table>
 <table class="fndef" id="fndef:3">
    <tr>
        <td class="fndef-backref">[3]</td>
        <td class="fndef-content">Aside from <em>The  Office</em>, I actually got this idea from Danika Dakika from the Anki Discord server; it was a game changer for me so a huge thank you to Danika&#33;</td>
    </tr>
</table>
 <table class="fndef" id="fndef:4">
    <tr>
        <td class="fndef-backref">[4]</td>
        <td class="fndef-content">I wanted to also say that I didn&#39;t come up with this idea specifically but I was unable to find where it was sourced from exactly. If you know the right reference here, please let me know&#33;</td>
    </tr>
</table>
</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Lessons Learned from How I Use Anki</em>. <a href="https://jacobzelko.com/07092023212334-how-i-anki">https://jacobzelko.com/07092023212334-how-i-anki</a>. July 9 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 09 Jul 2023 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  Notes on Managing Open Source Organizations  ]]>
  </title>
  <link> https://jacobzelko.com/06202023182947-notes-open-orgs/index.html </link>
  <guid> https://jacobzelko.com/06202023182947-notes-open-orgs/index.html </guid>
  <description>
    <![CDATA[  A collected overview on various comments from Julia organization organizers on how to effectively build up an open source organization  ]]>
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<h1>Notes on Managing Open Source Organizations</h1>
<p><strong>Date:</strong> June 20 2023</p>
<p><strong>Summary:</strong> A collected overview on various comments from Julia organization organizers on how to effectively build up an open source organization</p>
<p><strong>Keywords:</strong> #github #open #source #community #organization #blog #archive #julia</p>
<h1>Bibliography</h1>
<p>J. Zelko, “Julia Orgs, How Do You Manage Logistics?,” Julia Programming Language, Jun. 16, 2023. https://discourse.julialang.org/t/julia-orgs-how-do-you-manage-logistics/100430 &#40;accessed Jun. 20, 2023&#41;.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Structure Organization for Sustainability</li><li>Organization Guidelines</li><li>Managing Package Development</li><li>Community Outreach and Communication</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>As I have been involved with and have started various open source organizations in the past, I wanted to learn more about how other organizations within the Julia community manage this. In particular, as I am getting more serious about <a href="https://discourse.julialang.org/t/interest-on-starting-a-juliahealth-workgroup/97999">bolstering JuliaHealth</a>, I want to make sure to do this as effectively as possible. These were some comments and notes from folks within the Julia Community who made suggestions on how to approach this effectively.</p>
<h3 id="structure_organization_for_sustainability">Structure Organization for Sustainability</h3>
<ul>
<li><p>Limit dependency on any one person – Jakob Nissen, George Datseris</p>
</li>
<li><p>All repositories and shared documents should have write access for multiple people, ensuring continuity even if some contributors are unavailable – Jakob Nissen, Guillaume Dalle</p>
</li>
<li><p>Furthermore, packages should be designed with longevity in mind, as maintenance can be a significant challenge – Jakob Nissen, Georgia Datseris</p>
</li>
<li><p>Build trust with frequent contributors – George Datseris</p>
<ul>
<li><p>Could review their PRs more leniently</p>
</li>
<li><p>Provide detailed reviews for newcomers</p>
</li>
</ul>
</li>
</ul>
<h3 id="organization_guidelines">Organization Guidelines</h3>
<ul>
<li><p>Think about what is the criteria &#40;such as reviews or approvals&#41; before action on a pull request is taken – Guillaume Dalle</p>
</li>
<li><p>Setting clear timeframes for feedback should be established – Guillaume Dalle</p>
</li>
<li><p>Allocate review time &#40;around 70-80&#37;&#41; to evaluating design aspects, logical connections between input-output arguments, and documentation of features – George Datseris</p>
</li>
<li><p>Adapt the intensity of a PR review based on its potential impact to a package – George Datseris</p>
<ul>
<li><p>PRs with package wide consequences should receive thorough evaluations</p>
</li>
<li><p>PRs that are independent of existing code could be reviewed more quickly</p>
</li>
<li><p>Bug fixes that affect small parts of the package could be reviewed faster</p>
</li>
</ul>
</li>
</ul>
<h3 id="managing_package_development">Managing Package Development</h3>
<ul>
<li><p>Use GitHub issues to outline development roadmaps for a given package – Guillaume Dalle</p>
</li>
<li><p>Use labels to prioritize GitHub issues as important and relevant to a given package – Guillaume Dalle</p>
</li>
<li><p>Prioritize discussions within GitHub issues to foster transparency and consolidate discussions in location – George Datseris</p>
</li>
<li><p>Maintain source code simplicity – George Datseris</p>
</li>
</ul>
<h3 id="community_outreach_and_communication">Community Outreach and Communication</h3>
<ul>
<li><p>Avoid making promises about deliverables or timelines – Jakob Nissen</p>
</li>
<li><p>Community calls for triage discussions or long-term package orientation can help build community – Guillaume Dalle</p>
</li>
<li><p>Actively invite individuals to join the organization – George Datseris</p>
<ul>
<li><p>Provide them with administrative rights to relevant GitHub teams and repositories to foster participation</p>
</li>
</ul>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Notes on Managing Open Source Organizations</em>. <a href="https://jacobzelko.com/06202023182947-notes-open-orgs">https://jacobzelko.com/06202023182947-notes-open-orgs</a>. June 20 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 20 Jun 2023 00:00:00 +0000</pubDate>  
  
  
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  <title>
    <![CDATA[  Site Collaboration in Network Studies  ]]>
  </title>
  <link> https://jacobzelko.com/05302023200241-site-collaboration/index.html </link>
  <guid> https://jacobzelko.com/05302023200241-site-collaboration/index.html </guid>
  <description>
    <![CDATA[  An overview on how sites participate as collaborators in a network study  ]]>
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<h1>Site Collaboration in Network Studies</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> An overview on how sites participate as collaborators in a network study</p>
<p><strong>Keywords:</strong> #site #collaboration #network #study #archive</p>
<h1>Bibliography</h1>
<p>Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021. &#91;Online&#93;. Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Site Collaboration across Specific Communities<ol><li>OHDSI</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>Collaboration in network studies are often quite thorough and involved. This looks at how different communities encourage and participate within network studies.</p>
<h3 id="site_collaboration_across_specific_communities">Site Collaboration across Specific Communities</h3>
<h4 id="ohdsi">OHDSI</h4>
<ul>
<li><p>Site participation is voluntary</p>
<ul>
<li><p>No obligations</p>
</li>
</ul>
</li>
<li><p>Data from all participating sites remain at the site</p>
<ul>
<li><p>Only aggregate results shared across sites</p>
</li>
<li><p>No patient level pooling happens across sites</p>
</li>
</ul>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Site Collaboration in Network Studies</em>. <a href="https://jacobzelko.com/05302023200241-site-collaboration">https://jacobzelko.com/05302023200241-site-collaboration</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
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  <title>
    <![CDATA[  Study Package Deficiencies  ]]>
  </title>
  <link> https://jacobzelko.com/05302023190833-study-package-deficiencies/index.html </link>
  <guid> https://jacobzelko.com/05302023190833-study-package-deficiencies/index.html </guid>
  <description>
    <![CDATA[  Existing deficiencies within study packages for network studies  ]]>
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<h1>Study Package Deficiencies</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> Existing deficiencies within study packages for network studies</p>
<p><strong>Keywords:</strong> #package #deficiency #study #archive</p>
<h1>Bibliography</h1>
<p>Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021. &#91;Online&#93;. Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Deficiences Found across Communities<ol><li>OHDSI</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>I wanted to know what the different deficiencies exist for study packages in a network study context. This is a small overview of known deficiencies broken down by community.</p>
<h3 id="deficiences_found_across_communities">Deficiences Found across Communities</h3>
<h4 id="ohdsi">OHDSI</h4>
<p>With standardization across sites using the OMOP CDM, this has dramatically improved the amount of ways <a href="https://jacobzelko.com/10282021140730-real-world-evidence">real world data</a> can be used across disciplines. With that, the current tools developed within OHDSI for OMOP CDM data analysis are often not sufficient for all desired or imagined analyses. This leads to the need of creating novel tools and resources that each collaboration may require.</p>
<p><a href="https://jacobzelko.com/05302023185922-study-package-requirements">It is additionally suggested that all participating sites record information about the ETL processed used to map any data asset into the OMOP Common Data Model to ensure clear understanding of how data sources are used.</a> In practice, I personally do not see this discussion happening very often sadly. It is definitely a point of concern to make this a more regular part of networked studies. &#91;1&#93;</p>
<p>Additionally, when working with claims data, there are <a href="https://jacobzelko.com/06082023203531-claims-data-limitations">several limitations about claims data</a> to be wary of.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Study Package Deficiencies</em>. <a href="https://jacobzelko.com/05302023190833-study-package-deficiencies">https://jacobzelko.com/05302023190833-study-package-deficiencies</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021.Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
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  <title>
    <![CDATA[  Open Network Studies  ]]>
  </title>
  <link> https://jacobzelko.com/05302023183944-open-network-studies/index.html </link>
  <guid> https://jacobzelko.com/05302023183944-open-network-studies/index.html </guid>
  <description>
    <![CDATA[  An overview of the different types of network studies that exist  ]]>
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<h1>Open Network Studies</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> An overview of the different types of network studies that exist</p>
<p><strong>Keywords:</strong> #ohdsi #network #studies #transparency #data #archive</p>
<h1>Bibliography</h1>
<p>Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021. &#91;Online&#93;. Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Characteristics of an OHDSI Open Network Study</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>Seeking to understand further the different types of network studies that exist.</p>
<h3 id="characteristics_of_an_ohdsi_open_network_study">Characteristics of an OHDSI Open Network Study</h3>
<p>Open OHDSI Network Study: a fully transparent research endeavor shared within the OHDSI research network.</p>
<ul>
<li><p>Every single aspect of the study, within reason, are made publicly available on the OHDSI GitHub:</p>
<ul>
<li><p>Documentation</p>
</li>
<li><p>Study Code</p>
</li>
<li><p>Results</p>
</li>
</ul>
</li>
<li><p>Study protocol describing scope and intent of study</p>
</li>
<li><p>Any developed software being OMOP CDM compliant</p>
</li>
<li><p>OHDSI Community Calls attendance encouraged</p>
</li>
<li><p>Aggregate study results made available in OHDSI GitHub</p>
</li>
<li><p>Publish study R Shiny Applications to data.ohdsi.org</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Open Network Studies</em>. <a href="https://jacobzelko.com/05302023183944-open-network-studies">https://jacobzelko.com/05302023183944-open-network-studies</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
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  <title>
    <![CDATA[  Study Design Suggestions  ]]>
  </title>
  <link> https://jacobzelko.com/05302023184827-study-design-ohdsi/index.html </link>
  <guid> https://jacobzelko.com/05302023184827-study-design-ohdsi/index.html </guid>
  <description>
    <![CDATA[  Suggestions on creating a network study design  ]]>
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<h1>Study Design Suggestions</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> Suggestions on creating a network study design</p>
<p><strong>Keywords:</strong> #study #design #suggestion #network #observational #health #archive</p>
<h1>Bibliography</h1>
<p>Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021. &#91;Online&#93;. Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Things To Avoid</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>These are some best practices found across a variety of resources that describe how to structure an observational health study.</p>
<h3>Things To Do</h3>
<ul>
<li><p>Pre-specify elements of an observational study such as its:</p>
<ul>
<li><p>Design</p>
</li>
<li><p>Parameters</p>
</li>
</ul>
</li>
</ul>
<h3 id="things_to_avoid">Things To Avoid</h3>
<ul>
<li><p>Do not evolve your approach for a desired result</p>
<ul>
<li><p>This can happen consciously or unconsciously</p>
</li>
<li><p>Known as p-hacking</p>
</li>
<li><p>Real world data can give the feeling of limitless opportunities</p>
<ul>
<li><p>Could lead to unclear lines of inquiry</p>
</li>
<li><p>Difficult to explain</p>
</li>
<li><p>Harder to reproduce</p>
</li>
</ul>
</li>
</ul>
</li>
</ul>
<p>The above avoidance suggestions does have some strong caveats however. In the context of a network study, there exists a tension between the idealized, &quot;in theory&quot; idea of a study design and the &quot;in practice&quot; study design. In practice, an idealized design may fail, not scientifically, but due to implementation details that were not foreseen. Furthermore, when considering an international audience, there could even be a serious design failure when not considering regional or country level differences.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Study Design Suggestions</em>. <a href="https://jacobzelko.com/05302023184827-study-design-ohdsi">https://jacobzelko.com/05302023184827-study-design-ohdsi</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
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  <title>
    <![CDATA[  Reviewing Quality of Study Code  ]]>
  </title>
  <link> https://jacobzelko.com/05302023195603-study-code-quality/index.html </link>
  <guid> https://jacobzelko.com/05302023195603-study-code-quality/index.html </guid>
  <description>
    <![CDATA[  Recommendations on ensuring code quality of network study packages  ]]>
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<h1>Reviewing Quality of Study Code</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> Recommendations on ensuring code quality of network study packages</p>
<p><strong>Keywords:</strong> #network #study #package #code #quality #archive</p>
<h1>Bibliography</h1>
<p>Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021. &#91;Online&#93;. Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Code Review</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>I wanted to collect general thoughts and insights about code quality of study packages as I find them. </p>
<h3 id="code_review">Code Review</h3>
<p>The code used in a network package should be reviewed that it performs as expected. This can be done by testing it within one&#39;s own local environment and that the study runs as expected. Additionally, any generated results from the study should be reviewed by clinical experts and stakeholders to ensure the accuracy of results generated from a given study package.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Reviewing Quality of Study Code</em>. <a href="https://jacobzelko.com/05302023195603-study-code-quality">https://jacobzelko.com/05302023195603-study-code-quality</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  What Are Study Packages?  ]]>
  </title>
  <link> https://jacobzelko.com/05302023184217-study-packages/index.html </link>
  <guid> https://jacobzelko.com/05302023184217-study-packages/index.html </guid>
  <description>
    <![CDATA[  How OHDSI defines study packages as well as generally what these are  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>What Are Study Packages?</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> How OHDSI defines study packages as well as generally what these are</p>
<p><strong>Keywords:</strong> #study #package #ohdsi #ohdsi #transparency #archive</p>
<h1>Bibliography</h1>
<p>Not Available </p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>OHDSI Understanding of Study Packages<ol><li>Commentary</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>Building understanding of study packages across different contexts.</p>
<h3 id="ohdsi_understanding_of_study_packages">OHDSI Understanding of Study Packages</h3>
<p>How OHDSI understands study packages: A completely traceable and reproducible process in the form of software. &#91;1&#93;</p>
<h4 id="commentary">Commentary</h4>
<p>With the current trajectory of the OHDSI community, I am worried that the ambitions of &quot;traceability&quot; and &quot;reproducibility&quot; are slowly becoming less a focus within the community despite being so heavily touted. There are several concerns I personally have about this goal such as:</p>
<ul>
<li><p>The interface between technically advanced and beginner users of studies is becoming more muddled</p>
<ul>
<li><p>I feel this is to the detriment of the study package overall</p>
</li>
</ul>
</li>
<li><p>More study package dependencies are shifting to opaque approaches and traceability is strongly hindered</p>
</li>
<li><p>Implementation within R is detrimental to the overall goal of reproducibility</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Are Study Packages?</em>. <a href="https://jacobzelko.com/05302023184217-study-packages">https://jacobzelko.com/05302023184217-study-packages</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021.Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  What Are Patient Cohorts?  ]]>
  </title>
  <link> https://jacobzelko.com/05302023184442-ohdsi-cohorts/index.html </link>
  <guid> https://jacobzelko.com/05302023184442-ohdsi-cohorts/index.html </guid>
  <description>
    <![CDATA[  An overview of patient cohorts  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>What Are Patient Cohorts?</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> An overview of patient cohorts</p>
<p><strong>Keywords:</strong> #patient #cohort #observational #health #research #archive</p>
<h1>Bibliography</h1>
<p>Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021. &#91;Online&#93;. Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Definitions</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>I wanted to have a more clear understanding on how patient cohorts are defined in general.</p>
<h3 id="definitions">Definitions</h3>
<p>Within observational health research, person groups that have a characteristics of interest.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Are Patient Cohorts?</em>. <a href="https://jacobzelko.com/05302023184442-ohdsi-cohorts">https://jacobzelko.com/05302023184442-ohdsi-cohorts</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Roles in a Network Study Collaboration  ]]>
  </title>
  <link> https://jacobzelko.com/05302023200347-roles-network-study/index.html </link>
  <guid> https://jacobzelko.com/05302023200347-roles-network-study/index.html </guid>
  <description>
    <![CDATA[  Roles that can be found across network studies  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Roles in a Network Study Collaboration</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> Roles that can be found across network studies</p>
<p><strong>Keywords:</strong> #role #network #study #collaboration #lead #analyst #archive</p>
<h1>Bibliography</h1>
<p>Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021. &#91;Online&#93;. Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Local Roles in an OHDSI Network Study<ol><li>Study Lead<ol><li>Responsibilities</li></ol></li><li>Publication Lead<ol><li>Responsibilities</li></ol></li></ol></li><li>External Roles in an OHDSI Network Study</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>An overview of various roles within ongoing network studies.</p>
<h3 id="local_roles_in_an_ohdsi_network_study">Local Roles in an OHDSI Network Study</h3>
<h4>Data Analyst</h4>
<h5>Responsibilities</h5>
<ul>
<li><p>Executes a study package</p>
</li>
<li><p>Reviews the output of a study package</p>
<ul>
<li><p>Ensures no sensitive information has been transmitted</p>
</li>
</ul>
</li>
<li><p>Complies with local governance policies</p>
<ul>
<li><p>Includes method of results sharing</p>
</li>
<li><p>Adhering to approval process for publications</p>
</li>
</ul>
</li>
</ul>
<h4 id="study_lead">Study Lead</h4>
<p>Every study requires a study lead within the OHDSI network. This lead can be any collaborator across the OHDSI community.</p>
<h5 id="responsibilities">Responsibilities</h5>
<ul>
<li><p>Leads coordination in collaboration with:</p>
<ul>
<li><p>Collaborating researchers</p>
</li>
<li><p>External data partners</p>
</li>
<li><p>Directs collaborators to</p>
<ul>
<li><p>Study protocol</p>
</li>
<li><p>Study package</p>
<ul>
<li><p>How to execute study package</p>
</li>
</ul>
</li>
</ul>
</li>
</ul>
</li>
<li><p>Review data quality reports across sites</p>
<ul>
<li><p>Explores and manages site level variation</p>
</li>
<li><p>Spearheads feasibility assessments across sites</p>
</li>
</ul>
</li>
<li><p>Publicizes study</p>
<ul>
<li><p>Announces in OHDSI community calls</p>
</li>
<li><p>Invites collaborators to participate in study</p>
</li>
</ul>
</li>
<li><p>Ensure reported sites adhere to local guidelines</p>
</li>
<li><p>Communicates how results should be received from sites</p>
<ul>
<li><p>Time frames for returning results</p>
</li>
</ul>
</li>
<li><p>Perform aggregation of results across sites to perform meta analysis</p>
</li>
<li><p>Monitor site participation</p>
<ul>
<li><p>Remove obstacles to running study package</p>
</li>
<li><p>Checking in with various sites on progress</p>
</li>
<li><p>Update study protocol per collaborator requirements</p>
</li>
</ul>
</li>
</ul>
<h4 id="publication_lead">Publication Lead</h4>
<h5 id="responsibilities__2">Responsibilities</h5>
<ul>
<li><p>Internal process are adhered to during preparation of artifacts</p>
</li>
<li><p>Prepare research artifacts</p>
</li>
<li><p>Coordinates over submission timeline for a given artifact</p>
</li>
</ul>
<h3 id="external_roles_in_an_ohdsi_network_study">External Roles in an OHDSI Network Study</h3>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Roles in a Network Study Collaboration</em>. <a href="https://jacobzelko.com/05302023200347-roles-network-study">https://jacobzelko.com/05302023200347-roles-network-study</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Pursuing Venues for Publication  ]]>
  </title>
  <link> https://jacobzelko.com/05302023203344-pursuing-publication-venues/index.html </link>
  <guid> https://jacobzelko.com/05302023203344-pursuing-publication-venues/index.html </guid>
  <description>
    <![CDATA[  Identified venues I have found for a variety of different fields as well as resources  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Pursuing Venues for Publication</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> Identified venues I have found for a variety of different fields as well as resources</p>
<p><strong>Keywords:</strong> #publication #venue #research #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>General Resources</li><li>Network Science</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>I wanted to have a consistent resource about where to publish materials for research and other publication artifacts. This is a short list that takes inspiration from multiple different influences in my life such as Dr. Gari Clifford, Dr. Jon Duke, Dr. John Carlos Baez, and others who had identified such meaningful lists of resources.</p>
<h3 id="general_resources">General Resources</h3>
<ul>
<li><p>JANE: Journal/Author Name Estimator - takes a given abstract and scans publications for relevance and fit.</p>
</li>
</ul>
<h3 id="network_science">Network Science</h3>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Pursuing Venues for Publication</em>. <a href="https://jacobzelko.com/05302023203344-pursuing-publication-venues">https://jacobzelko.com/05302023203344-pursuing-publication-venues</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Checking Design of a Study  ]]>
  </title>
  <link> https://jacobzelko.com/05302023185223-checking-study-design/index.html </link>
  <guid> https://jacobzelko.com/05302023185223-checking-study-design/index.html </guid>
  <description>
    <![CDATA[  Some suggested techniques on designing a study protocol  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Checking Design of a Study</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> Some suggested techniques on designing a study protocol</p>
<p><strong>Keywords:</strong> #analysis #sensitivity #network #study #design #archive</p>
<h1>Bibliography</h1>
<p>Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021. &#91;Online&#93;. Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Approaches</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>Suggestions that are useful for verifying if a network study was designed well.</p>
<h3 id="approaches">Approaches</h3>
<ul>
<li><p><a href="https://jacobzelko.com/06092023043316-sensitivity-analysis">Sensitivity Analysis</a></p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Checking Design of a Study</em>. <a href="https://jacobzelko.com/05302023185223-checking-study-design">https://jacobzelko.com/05302023185223-checking-study-design</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Requirements for Running Network Collaborations  ]]>
  </title>
  <link> https://jacobzelko.com/05302023202626-site-collaboration-requirements/index.html </link>
  <guid> https://jacobzelko.com/05302023202626-site-collaboration-requirements/index.html </guid>
  <description>
    <![CDATA[  Common requirements in running an observational health network study  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Requirements for Running Network Collaborations</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> Common requirements in running an observational health network study</p>
<p><strong>Keywords:</strong> #requirement #network #study #observational #health #archive</p>
<h1>Bibliography</h1>
<p>Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021. &#91;Online&#93;. Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>General Overview</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>I was curious what often is required to run a network study and this was an encapsulation of what I had found.</p>
<h3 id="general_overview">General Overview</h3>
<ul>
<li><p>Most collaborating organizations in a network study do not require data sharing agreements</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Requirements for Running Network Collaborations</em>. <a href="https://jacobzelko.com/05302023202626-site-collaboration-requirements">https://jacobzelko.com/05302023202626-site-collaboration-requirements</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  General Guidelines for Network Study Development  ]]>
  </title>
  <link> https://jacobzelko.com/05302023184624-general-study-guidelines/index.html </link>
  <guid> https://jacobzelko.com/05302023184624-general-study-guidelines/index.html </guid>
  <description>
    <![CDATA[  Guidelines that various groups have developed for working within the context of network studies  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>General Guidelines for Network Study Development</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> Guidelines that various groups have developed for working within the context of network studies</p>
<p><strong>Keywords:</strong> #guideline #network #study #ohdsi #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>General Community Guidelines for Network Studies<ol><li>OHDSI</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>Network studies are a strange thing. They both are not well documented and at the same time starting to somewhat move towards mainstream discussions of large scale analytics.</p>
<h3 id="general_community_guidelines_for_network_studies">General Community Guidelines for Network Studies</h3>
<h4 id="ohdsi">OHDSI</h4>
<p>General principles for network studies: &#91;1&#93;</p>
<ul>
<li><p>Fundamental is to describe one&#39;s research question fully</p>
</li>
<li><p>Specify approach in executing study</p>
</li>
<li><p>No requirement to share study across entire OHDSI network</p>
</li>
<li><p>Can limit study to:</p>
<ul>
<li><p>Only few sites</p>
</li>
<li><p>Home site</p>
</li>
</ul>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>General Guidelines for Network Study Development</em>. <a href="https://jacobzelko.com/05302023184624-general-study-guidelines">https://jacobzelko.com/05302023184624-general-study-guidelines</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021.Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Finalizing an OHDSI Study Design  ]]>
  </title>
  <link> https://jacobzelko.com/05302023185737-finalizing-ohdsi-study/index.html </link>
  <guid> https://jacobzelko.com/05302023185737-finalizing-ohdsi-study/index.html </guid>
  <description>
    <![CDATA[  Outline for how to finalize OHDSI studies  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Finalizing an OHDSI Study Design</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> Outline for how to finalize OHDSI studies</p>
<p><strong>Keywords:</strong> #ohdsi #collaborator #network #study #protocol #archive</p>
<h1>Bibliography</h1>
<p>Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021. &#91;Online&#93;. Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Outline</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>How OHDSI network study designs generally come to a conclusion</p>
<h3 id="outline">Outline</h3>
<ul>
<li><p>Has detailed cohort definitions</p>
</li>
<li><p>Study design information concluded</p>
</li>
<li><p>Review protocol with collaborators</p>
<ul>
<li><p>In practice, this review needs to be a lot more guided</p>
</li>
</ul>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Finalizing an OHDSI Study Design</em>. <a href="https://jacobzelko.com/05302023185737-finalizing-ohdsi-study">https://jacobzelko.com/05302023185737-finalizing-ohdsi-study</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Quality of Study Data  ]]>
  </title>
  <link> https://jacobzelko.com/05302023193327-study-data-quality/index.html </link>
  <guid> https://jacobzelko.com/05302023193327-study-data-quality/index.html </guid>
  <description>
    <![CDATA[  Recommendations and thoughts surrounding data quality for network studies  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Quality of Study Data</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> Recommendations and thoughts surrounding data quality for network studies</p>
<p><strong>Keywords:</strong> #study #data #quality #network #archive</p>
<h1>Bibliography</h1>
<p>Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021. &#91;Online&#93;. Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Study Preparation</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>These are general points of feedback on ensuring the quality of data used in a network study context</p>
<h3 id="study_preparation">Study Preparation</h3>
<ol>
<li><p>Review the quality of the data</p>
</li>
<li><p>Thoroughly understand data elements such as:</p>
</li>
</ol>
<p>a. What fields are populated</p>
<p>b. What care settings are present</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Quality of Study Data</em>. <a href="https://jacobzelko.com/05302023193327-study-data-quality">https://jacobzelko.com/05302023193327-study-data-quality</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Revising and Managing Cohorts  ]]>
  </title>
  <link> https://jacobzelko.com/05302023195713-cohort-revisions/index.html </link>
  <guid> https://jacobzelko.com/05302023195713-cohort-revisions/index.html </guid>
  <description>
    <![CDATA[  How to review and revise cohorts in an observational health study  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Revising and Managing Cohorts</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> How to review and revise cohorts in an observational health study</p>
<p><strong>Keywords:</strong> #cohort #observational #health #archive</p>
<h1>Bibliography</h1>
<p>Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021. &#91;Online&#93;. Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Cohort Review</li><li>Cohort Management</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>This note works as an overview on how to develop and revise robust cohorts within the context of observational health research.</p>
<h3 id="cohort_review">Cohort Review</h3>
<ul>
<li><p>Review associated literature</p>
</li>
<li><p>Inquire on advice from relevant clinical and technical experts</p>
</li>
<li><p>Use the <a href="https://jacobzelko.com/01102023212115-computable-phenotypes">Phenotype Workflow</a> to more clearly understand how to powerfully build a cohort based on a cohort</p>
</li>
</ul>
<h3 id="cohort_management">Cohort Management</h3>
<p>A disease definition library could be of great benefit to standardize how cohorts are generated consistently in a network study context. An example is the PhenotypeLibrary initiative from within OHDSI.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Revising and Managing Cohorts</em>. <a href="https://jacobzelko.com/05302023195713-cohort-revisions">https://jacobzelko.com/05302023195713-cohort-revisions</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Deficiencies in a Study Collaboration  ]]>
  </title>
  <link> https://jacobzelko.com/05302023200536-study-collaboration-deficiencies/index.html </link>
  <guid> https://jacobzelko.com/05302023200536-study-collaboration-deficiencies/index.html </guid>
  <description>
    <![CDATA[  An overview on some of the deficiences of a network study collaboration  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Deficiencies in a Study Collaboration</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> An overview on some of the deficiences of a network study collaboration</p>
<p><strong>Keywords:</strong> #network #study #collaboration #deficiency #observational #health #archive</p>
<h1>Bibliography</h1>
<p>Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021. &#91;Online&#93;. Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Overarching Themes</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>Although I believe strongly network studies are a good idea, it is also worth countering my intuition to know about what are the deficiencies that can be found in network studies. These are some notes on those deficiences.</p>
<h3 id="overarching_themes">Overarching Themes</h3>
<ul>
<li><p>Social Determinants of Health information is not well represented within a observational health network study</p>
</li>
<li><p>Concept sets used in the creation of a cohort definition need to be handled with care</p>
<ul>
<li><p>Must be thought of holistically</p>
</li>
<li><p>Susceptible to biasing overall study</p>
</li>
</ul>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Deficiencies in a Study Collaboration</em>. <a href="https://jacobzelko.com/05302023200536-study-collaboration-deficiencies">https://jacobzelko.com/05302023200536-study-collaboration-deficiencies</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Study Package Requirements  ]]>
  </title>
  <link> https://jacobzelko.com/05302023185922-study-package-requirements/index.html </link>
  <guid> https://jacobzelko.com/05302023185922-study-package-requirements/index.html </guid>
  <description>
    <![CDATA[  What general requirements are made for network study packages  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Study Package Requirements</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> What general requirements are made for network study packages</p>
<p><strong>Keywords:</strong> #study #package #ohdsi #requirement #network #cdm #archive</p>
<h1>Bibliography</h1>
<p>Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021. &#91;Online&#93;. Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Requirements by Community<ol><li>OHDSI</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>I wanted to know what the most common requirements are for study packages in a network study context. This is a small overview of known requirements broken down by community.</p>
<h3 id="requirements_by_community">Requirements by Community</h3>
<h4 id="ohdsi">OHDSI</h4>
<p>Network studies conducted within the context of OHDSI are premised that all data assets across all participating sites adhere to the OMOP Common Data Model. Furthermore, all said data assets need to have mappings or relationships made utilizing the OMOP standardized vocabularies. This vocabulary subsumes standard concepts across a variety of different vocabularies to enable consistency in investigations across partner sites.</p>
<p>It is additionally suggested that all participating sites record information about the ETL processed used to map any data asset into the OMOP Common Data Model to ensure clear understanding of how data sources are used. In practice, I personally do not see this discussion happening very often sadly. It is definitely a point of concern to make this a more regular part of networked studies. &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Study Package Requirements</em>. <a href="https://jacobzelko.com/05302023185922-study-package-requirements">https://jacobzelko.com/05302023185922-study-package-requirements</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021.Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  OHDSI Protocol Suggestions  ]]>
  </title>
  <link> https://jacobzelko.com/05302023185043-ohdsi-protocol-study/index.html </link>
  <guid> https://jacobzelko.com/05302023185043-ohdsi-protocol-study/index.html </guid>
  <description>
    <![CDATA[  Overview of OHDSI suggestions for an OHDSI protocol  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>OHDSI Protocol Suggestions</h1>
<p><strong>Date:</strong> May 30 2023</p>
<p><strong>Summary:</strong> Overview of OHDSI suggestions for an OHDSI protocol</p>
<p><strong>Keywords:</strong> #ohdsi #protocol #network #science #design #suggestion #archive</p>
<h1>Bibliography</h1>
<p>Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021. &#91;Online&#93;. Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>General Details</li><li>Outline of What a Protocol Should Include</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>I wanted to more clearly define and delineate how OHDSI suggests a protocol design.</p>
<h3 id="general_details">General Details</h3>
<p>A study&#39;s plan should be well-documented prior to executing a study.</p>
<h3 id="outline_of_what_a_protocol_should_include">Outline of What a Protocol Should Include</h3>
<ul>
<li><p>Primary study question</p>
</li>
<li><p>Approach to answer study question</p>
</li>
<li><p>Study population&#40;s&#41;:</p>
<ul>
<li><p>Well-defined</p>
</li>
<li><p>Should be able to be reproduced by others</p>
</li>
</ul>
</li>
<li><p>Methods such as:</p>
<ul>
<li><p>Statistical procedures</p>
</li>
</ul>
</li>
<li><p>Expected study results:</p>
<ul>
<li><p>Metrics that are used to answer the question</p>
</li>
<li><p>Tables</p>
</li>
<li><p>Plots</p>
</li>
</ul>
</li>
<li><p>Pre-Study Assessment</p>
<ul>
<li><p>Feasibility assessment</p>
</li>
<li><p>Statistical power of a study</p>
</li>
</ul>
</li>
<li><p>Anticipated time line</p>
</li>
<li><p>Study Milestones</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>OHDSI Protocol Suggestions</em>. <a href="https://jacobzelko.com/05302023185043-ohdsi-protocol-study">https://jacobzelko.com/05302023185043-ohdsi-protocol-study</a>. May 30 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 30 May 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  A Fun Exploration of Perfect, Abundant, and Deficient Numbers  ]]>
  </title>
  <link> https://jacobzelko.com/05102023043333-perfect-abundant-deficit/index.html </link>
  <guid> https://jacobzelko.com/05102023043333-perfect-abundant-deficit/index.html </guid>
  <description>
    <![CDATA[  A computational treatment and exploration of abundant and deficient numbers  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>A Fun Exploration of Perfect, Abundant, and Deficient Numbers</h1>
<p><strong>Date:</strong> May 10 2023</p>
<p><strong>Summary:</strong> A computational treatment and exploration of abundant and deficient numbers</p>
<p><strong>Keywords:</strong> #blog #abundant #deficient #number #theory #julia #programming #perfect #aliquot #sequence #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>What Are These Numbers?</li><li>Examining Divisors of These Numbers<ol><li>Abundant Numbers</li><li>Deficient Numbers</li></ol></li><li>Any Connection to Aliquot Sequences?<ol><li>Aliquot Sequences of Abundant Numbers</li><li>Aliquot Sequences of Deficient Numbers</li></ol></li><li>Conclusion</li><li>Addendums<ol><li>Discussion on Julia Implementation</li><li>Categorical Understandings of Number Species</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>I was at the gym working out when I started thinking about locker numbers in the men&#39;s locker room. I was reminded of perfect numbers and was thinking about perfect number examples. I started testing random numbers in my mind and noticed numbers which had divisors that summed up to greater than their number and also less than their number. I had no idea about the existence of abundant and deficient numbers and got curious about these numbers and to see what characteristics I could find about them.</p>
<h3 id="what_are_these_numbers">What Are These Numbers?</h3>
<p>In Number Theory, there exist three species of numbers that depend on the divisors of a given number &#40;excluding the number itself as a divisor&#41;. Here are the three species and their simple characteristics:</p>
<p><strong>Deficient Numbers</strong> - these numbers have divisors whose sum is never greater than the number being examined. An example is the number \(4\) which has as divisors \(1\) and \(2\) – those divisors only sum up to \(3\).</p>
<p><strong>Perfect Numbers</strong> - these numbers have divisors which sum to exactly to the number being examined. An example is the number \(6\) which has as divisors \(1, 2, 3\) which sum together to \(6\).</p>
<p><strong>Abundant Numbers</strong> - these numbers have divisors whose sum is greater than the number being examined. An example is the number \(12\) whose divisors are \(1, 2, 3, 4, 6\) and sum to \(16\).</p>
<p>As it turns out, there are infinite deficient, perfect, and abundant numbers. However, only around 50 perfect numbers have ever been discovered to this day&#33; \(6\) is the smallest perfect number but then perfect numbers grow to be hundreds of digits long&#33; For that reason, this fun exploration will really only explore abundant and deficient numbers. </p>
<h3 id="examining_divisors_of_these_numbers">Examining Divisors of These Numbers</h3>
<p>Out of curiosity, I wanted to know if there were any trends to be noticed in the divisors of the deficient and abundant number species. So, I whipped together some code to explore this within Julia &#40;if you are not interested in the code, you can skip it and just go to the results for each section&#41;. To get started, I first defined a function to calculate divisors of a number:</p>
<pre><code class="language-julia">import Primes: factorfunction divisors&#40;n&#41;    d &#61; Int64&#91;1&#93;    for &#40;p, e&#41; in factor&#40;n&#41;        t &#61; Int64&#91;&#93;
        r &#61; 1        for i in 1:e
            r *&#61; p
	    for u in d
	        push&#33;&#40;t, u * r&#41;
	    end
	end	append&#33;&#40;d, t&#41;
    end    return sort&#33;&#40;d&#41;end</code></pre>
<p>With this function defined, now, I am going to calculate some deficient and deficient numbers &#40;since perfect numbers are hard to calculate, I am going to look up a few to explore&#41;.  To do that, we will use the following snippet to find \(1000\) abundant and deficient numbers:</p>
<pre><code class="language-julia">i &#61; 1 
deficient_numbers &#61; &#91;&#93;
abundant_numbers &#61; &#91;&#93;
while true
  divisor_sum &#61; divisors&#40;i&#41;&#91;1:end-1&#93; |&gt; sum
  if divisor_sum &lt; i &amp;&amp; length&#40;deficient_numbers&#41; &#33;&#61; 1000
    push&#33;&#40;deficient_numbers, i&#41;
  elseif divisor_sum &gt; i &amp;&amp; length&#40;abundant_numbers&#41; &#33;&#61; 1000
    push&#33;&#40;abundant_numbers, i&#41;
  end  i &#43;&#61; 1  length&#40;abundant_numbers&#41; &#61;&#61; 1000 &amp;&amp; length&#40;deficient_numbers&#41; &#61;&#61; 1000 ? break : continue
end</code></pre>
<p>We are set to explore further these numbers&#33;</p>
<h4 id="abundant_numbers">Abundant Numbers</h4>
<p>As a first pass, let&#39;s calculate the divisors of the abundant numbers and plot their frequency:</p>
<pre><code class="language-julia">import DataStructures: counter
import UnicodePlots: barplotabundant_divisors &#61; vcat&#40;divisors.&#40;abundant_numbers&#41;...&#41; |&gt; counter |&gt; Dict |&gt; sort;vs &#61; collect&#40;values&#40;abundant_divisors&#41;&#41;;
ks &#61; collect&#40;keys&#40;abundant_divisors&#41;&#41;;barplot&#40;ks&#91;1:20&#93;, vs&#91;1:20&#93;, xlabel &#61; &quot;Count&quot;, ylabel &#61; &quot;Divisors&quot;, title &#61; &quot;Divisor Count for First 1000 Abundant Numbers&quot;&#41;</code></pre>
<p>Which gives the following plot:</p>
<pre><code class="language-txt">Divisor Count for First 1000 Abundant Numbers 
               ┌                                        ┐ 
             1 ┤■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■ 1 000   
             2 ┤■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■ 995     
             3 ┤■■■■■■■■■■■■■■■■■■■■■■ 677                
             4 ┤■■■■■■■■■■■■■■■■■■■■■ 623                 
             5 ┤■■■■■■■■■■ 308                            
             6 ┤■■■■■■■■■■■■■■■■■■■■■■ 672                
             7 ┤■■■■■■■ 216                               
             8 ┤■■■■■■■■■■■ 347                           
             9 ┤■■■■■■■■ 229                              
   Divisors 10 ┤■■■■■■■■■■ 303                            
            11 ┤■■■■ 116                                  
            12 ┤■■■■■■■■■■■ 336                           
            13 ┤■■■ 96                                    
            14 ┤■■■■■■■ 211                               
            15 ┤■■■■■ 139                                 
            16 ┤■■■■■■ 188                                
            17 ┤■■ 68                                     
            18 ┤■■■■■■■ 224                               
            19 ┤■■ 61                                     
            20 ┤■■■■■■■ 201                               
               └                                        ┘ 
                                  Count</code></pre>
<p>Without any real methodology, what I notice is that there seems to be an interesting pattern where certain divisors are being repeated more than others as more and more divisors are found. It almost feels like a kind of decaying sequence where counts seems to spike on any multiple of \(3\) or \(4\) more consistently than any other number. Even though, it seems like multiples of \(3\) are not as consistent.</p>
<h4 id="deficient_numbers">Deficient Numbers</h4>
<p>Now, let&#39;s calculate the divisors of the deficient numbers and plot their frequency:</p>
<pre><code class="language-julia">import DataStructures: counter
import UnicodePlots: barplotdeficient_divisors &#61; vcat&#40;divisors.&#40;deficient_numbers&#41;...&#41; |&gt; counter |&gt; Dict |&gt; sort;vs &#61; collect&#40;values&#40;deficient_divisors&#41;&#41;;
ks &#61; collect&#40;keys&#40;deficient_divisors&#41;&#41;;barplot&#40;ks&#91;1:20&#93;, vs&#91;1:20&#93;, xlabel &#61; &quot;Count&quot;, ylabel &#61; &quot;Divisors&quot;, title &#61; &quot;Divisor Count for First 1000 Deficient Numbers&quot;&#41;</code></pre>
<p>Which gives the following plot:</p>
<pre><code class="language-txt">Divisor Count for First 1000 Deficient Numbers 
               ┌                                        ┐ 
             1 ┤■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■ 1 000   
             2 ┤■■■■■■■■■■■ 337                           
             3 ┤■■■■■■■ 220                               
             4 ┤■■■■ 124                                  
             5 ┤■■■■■■ 168                                
             7 ┤■■■■ 119                                  
             8 ┤■■ 51                                     
             9 ┤■■ 73                                     
            10 ┤■ 36                                      
   Divisors 11 ┤■■■ 82                                    
            13 ┤■■ 71                                     
            14 ┤■ 25                                      
            15 ┤■ 43                                      
            16 ┤■ 18                                      
            17 ┤■■ 56                                     
            19 ┤■■ 50                                     
            21 ┤■ 31                                      
            22 ┤■ 22                                      
            23 ┤■ 42                                      
            25 ┤■ 33                                      
               └                                        ┘ 
                                  Count</code></pre>
<p>What&#39;s interesting here is that I did not see any immediate pattern or phenomena with these divisors at first glance. However, when I examined the plot using a log10 scale, I then saw that consistently, the counts for odd divisors for outnumber those for even divisors:</p>
<pre><code class="language-txt">Divisor Count for First 1000 Deficient Numbers 
               ┌                                        ┐ 
             1 ┤■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■ 1 000   
             2 ┤■■■■■■■■■■■■■■■■■■■■■■■■■■■■ 337          
             3 ┤■■■■■■■■■■■■■■■■■■■■■■■■■■ 220            
             4 ┤■■■■■■■■■■■■■■■■■■■■■■■ 124               
             5 ┤■■■■■■■■■■■■■■■■■■■■■■■■ 168              
             7 ┤■■■■■■■■■■■■■■■■■■■■■■■ 119               
             8 ┤■■■■■■■■■■■■■■■■■■■ 51                    
             9 ┤■■■■■■■■■■■■■■■■■■■■ 73                   
            10 ┤■■■■■■■■■■■■■■■■■ 36                      
   Divisors 11 ┤■■■■■■■■■■■■■■■■■■■■■ 82                  
            13 ┤■■■■■■■■■■■■■■■■■■■■ 71                   
            14 ┤■■■■■■■■■■■■■■■ 25                        
            15 ┤■■■■■■■■■■■■■■■■■■ 43                     
            16 ┤■■■■■■■■■■■■■■ 18                         
            17 ┤■■■■■■■■■■■■■■■■■■■ 56                    
            19 ┤■■■■■■■■■■■■■■■■■■■ 50                    
            21 ┤■■■■■■■■■■■■■■■■ 31                       
            22 ┤■■■■■■■■■■■■■■■ 22                        
            23 ┤■■■■■■■■■■■■■■■■■■ 42                     
            25 ┤■■■■■■■■■■■■■■■■■ 33                      
               └                                        ┘ 
                           Count &#40;Log10 Scale&#41;</code></pre>
<h3 id="any_connection_to_aliquot_sequences">Any Connection to Aliquot Sequences?</h3>
<p>Out of curiosity, I wondered if there could be any overlap of abundant and deficient numbers&#39; divisors with their respective aliquot sequences. Now, an aliquot sequence is a rather fun thing. It has the following form:</p>
\[
s_{0} = k
\]
\[
s_{n} = s(s_{n-1}) = \sigma_{1}(s_{n-1}) - s_{n-1} \text{if} s_{n-1} \gt 0
\]
\[
s_{n} = 0 \text{if} s_{n-1} = 0
\]
<p>I decided to implement a small algorithm to compute the aliquot sequence for a given number as follows:</p>
<pre><code class="language-julia">function aliquot_sequence&#40;num; max_itrs &#61; missing&#41;
  sequence &#61; &#91;num&#93;
  s &#61; num  while true
    s &#61; sum&#40;divisors&#40;s&#41;&#41; - s
    if &#33;ismissing&#40;aliquot_sequence&#41; &amp;&amp; length&#40;sequence&#41; &#61;&#61; max_itrs
      return nothing
    elseif s &#61;&#61; 0 
      push&#33;&#40;sequence, s&#41;
      break
    elseif in&#40;s, sequence&#41;
      break
    else
      push&#33;&#40;sequence, s&#41;
    end
    
  end  return sequenceend</code></pre>
<p>In my implementation, I decided to limit the sequence to no repeating sequence values for a number. Let&#39;s plot these sequence values and see what could be seen as before.</p>
<blockquote>
<p>NOTE: As a limitation, some of these sequences have an immensely high number of iterations which cause my computer to explode &#40;looking at you, abundant number \(138\)&#41;&#33; For that reason, I am only calculating sequences for an abundant number that has only 10 maximum iterations within their aliquot sequence.</p>
</blockquote>
<h4 id="aliquot_sequences_of_abundant_numbers">Aliquot Sequences of Abundant Numbers</h4>
<p>Let&#39;s calculate the aliquot sequences for \(500\) abundant numbers that have at most \(10\) terms within their sequence:</p>
<pre><code class="language-julia">import DataStructures: counter
import UnicodePlots: barplotabundant_aliquot_sequences &#61; &#91;&#93;for i in 1:1000000
         divisor_sum &#61; divisors&#40;i&#41;&#91;1:end-1&#93; |&gt; sum
         if divisor_sum &gt; i 
           seq &#61; aliquot_sequence&#40;i, 10&#41;
           &#33;isnothing&#40;seq&#41; ? push&#33;&#40;abundant_aliquot_sequences, seq&#41; : continue
         end         i &#43;&#61; 1         length&#40;abundant_aliquot_sequences&#41; &#61;&#61; 500 ? break : continue
         
       end
        
abundant_aliquot_terms &#61; vcat&#40;abundant_aliquot_sequences...&#41; |&gt; counter |&gt; Dict |&gt; sort;vs &#61; collect&#40;values&#40;abundant_aliquot_terms&#41;&#41;;
ks &#61; collect&#40;keys&#40;abundant_aliquot_terms&#41;&#41;;barplot&#40;ks&#91;1:20&#93;, vs&#91;1:20&#93;, xlabel &#61; &quot;Count&quot;, ylabel &#61; &quot;Terms&quot;, title &#61; &quot;Aliquot Term Count for 500 Abundant Numbers&quot;&#41;</code></pre>
<p>Which yields the plot:</p>
<pre><code class="language-txt">Aliquot Term Count for 500 Abundant Numbers 
            ┌                                        ┐ 
          0 ┤■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■ 448   
          1 ┤■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■ 448   
          3 ┤ 3                                        
          4 ┤ 3                                        
          6 ┤ 3                                        
          7 ┤■ 9                                       
          8 ┤■ 9                                       
          9 ┤ 3                                        
         10 ┤ 1                                        
   Terms 11 ┤ 4                                        
         12 ┤ 1                                        
         13 ┤■ 11                                      
         14 ┤ 1                                        
         15 ┤ 3                                        
         16 ┤ 1                                        
         17 ┤ 3                                        
         18 ┤ 2                                        
         19 ┤■ 8                                       
         20 ┤ 1                                        
         21 ┤ 4                                        
            └                                        ┘ 
                               Count</code></pre>
<p>Here, I really cannot discern any relatable pattern as well as significance that can be tied back to abundant numbers. I am not sure if there is a way to tie significance back to abundant numbers at all in this scenario.</p>
<h4 id="aliquot_sequences_of_deficient_numbers">Aliquot Sequences of Deficient Numbers</h4>
<p>Let&#39;s calculate the aliquot sequences for \(500\) abundant numbers that have at most \(10\) terms within their sequence:</p>
<pre><code class="language-julia">import DataStructures: counter
import UnicodePlots: barplotdeficient_aliquot_sequences &#61; &#91;&#93;for i in 1:1000000
         divisor_sum &#61; divisors&#40;i&#41;&#91;1:end-1&#93; |&gt; sum
         if divisor_sum &lt; i 
           seq &#61; aliquot_sequence&#40;i, 10&#41;
           &#33;isnothing&#40;seq&#41; ? push&#33;&#40;deficient_aliquot_sequences, seq&#41; : continue
         end         i &#43;&#61; 1         length&#40;deficient_aliquot_sequences&#41; &#61;&#61; 500 ? break : continue
         
       end
        
deficient_aliquot_terms &#61; vcat&#40;deficient_aliquot_sequences...&#41; |&gt; counter |&gt; Dict |&gt; sort;vs &#61; collect&#40;values&#40;deficient_aliquot_terms&#41;&#41;;
ks &#61; collect&#40;keys&#40;deficient_aliquot_terms&#41;&#41;;barplot&#40;ks&#91;1:20&#93;, vs&#91;1:20&#93;, xlabel &#61; &quot;Count&quot;, ylabel &#61; &quot;Terms&quot;, title &#61; &quot;Aliquot Term Count for 500 Deficient Numbers&quot;&#41;</code></pre>
<p>Which yields the plot:</p>
<pre><code class="language-txt">Aliquot Term Count for 500 Deficient Numbers 
            ┌                                        ┐ 
          0 ┤■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■ 487   
          0 ┤■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■ 487   
          1 ┤■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■■ 487   
          2 ┤ 1                                        
          3 ┤■■ 28                                     
          4 ┤■■ 27                                     
          5 ┤ 1                                        
          6 ┤■ 10                                      
          7 ┤■■ 24                                     
          8 ┤■■ 23                                     
   Terms  9 ┤■■ 26                                     
         10 ┤■ 10                                      
         11 ┤■ 17                                      
         12 ┤ 2                                        
         13 ┤■ 15                                      
         14 ┤■ 9                                       
         15 ┤■■ 25                                     
         16 ┤■ 7                                       
         17 ┤■ 13                                      
         18 ┤ 1                                        
         19 ┤■■ 25                                     
            └                                        ┘ 
                               Count</code></pre>
<p>Again, I really cannot discern any relatable pattern as well as significance that can be tied back to deficient numbers.</p>
<h3 id="conclusion">Conclusion</h3>
<p>This was a small exploration that I wanted to do of these numbers to see if I could find any patterns or significance within aspects of these numbers.  It seems like there may be some present within the factors of abundant and deficient numbers, but when looking at their corresponding aliquot sequences, I am unable to determine anything from a computational sense.  To that end, I was also curious about how effective computation can be in helping to derive or provide hints about what may underlie these numbers. In short, it would appear that computation is quite helpful to give rise to initial questions. For example, I&#39;d be curious to what extent the patterns I noticed within abundant and deficient numbers prolong for and if they are actually legitimate observations. At that point, one could then start applying basic data science skills to group, explore, and summarize potential trends within these numbers.</p>
<p>For now, my curiosity is sated and it might be worth a return to in the future. One thing this blog post did make me think about is analogies. The idea of deficient, perfect, and abundant numbers are really fascinating as it lends itself to analogs within set theory relationships &#40;like many-to-one -&gt; deficient number, one-to-one -&gt; perfect number, one-to-many -&gt; abundant number&#41;. I wonder if it could be used as analogy outside of mathematics strictly and in terms like healthcare &#40;sub-type of a disease -&gt; deficient number, canonical disease diagnosis -&gt; perfect number, disease family -&gt; abundant number&#41;. Might be worth further exploration in the future.</p>
<h3 id="addendums">Addendums</h3>
<h4 id="discussion_on_julia_implementation">Discussion on Julia Implementation</h4>
<p>There was a <a href="https://discourse.julialang.org/t/blog-post-a-fun-exploration-of-perfect-abundant-and-deficient-numbers/99168/4">nice discussion</a> from within the Julia Discourse about this post talking about implementation details of some of the functions I was using and how to handle large numbers in computation. In particular, there was suggestion on using types like <code>BigInt</code> or <code>BigFloat</code> to handle these large numbers &#40;such as the 8th perfect number&#41;. Interestingly, to calculate divisors, one user &#40;gtgt&#41; suggested the following approach which was quite beyond my thinking to calculate divisors for a given value. Here was their approach:</p>
<blockquote>
<p>You can use the fact that if \(n = \prod p_{i}^{e_{i}}\) then \(\sigma{n} = \prod \frac{p_{i}^{e_{i} - 1} - 1}{p_{i} - 1}\) to avoid allocating a vector to store the divisors.</p>
</blockquote>
<p>This was then followed by a programming implementation:</p>
<pre><code class="language-julia">using Primesfunction sum_divisors&#40;n&#41;
    s &#61; one&#40;n&#41;
    for &#40;p, e&#41; in Primes.factor&#40;n&#41;
         s *&#61; &#40;p^&#40;e &#43; 1&#41; - 1&#41; ÷ &#40;p - 1&#41;
    end
    s
endfunction get_abundant_and_deficient_numbers&#40;n::T&#41; where T &lt;: Integer
    # get the first n abundant and deficient numbers
    n_abundants &#61; 0
    n_deficients &#61; 0    abundants &#61; sizehint&#33;&#40;T&#91;&#93;, n&#41;
    deficients &#61; sizehint&#33;&#40;T&#91;&#93;, n&#41;    k &#61; 1
    while n_abundants &lt; n || n_deficients &lt; n
         σ &#61; sum_divisors&#40;k&#41;
         if σ &gt; 2k &amp;&amp; n_abundants &lt; n
             n_abundants &#43;&#61; 1
             push&#33;&#40;abundants, k&#41;
        elseif σ &lt; 2k &amp;&amp; n_deficients &lt; n
             n_deficients &#43;&#61; 1
             push&#33;&#40;deficients, k&#41;
        end        k &#43;&#61; 1
    end    abundants, deficients
end</code></pre>
<p>I haven&#39;t had a chance to test that new implementation but I would imagine, being that it is far more type stable, that it would be more efficient. However, I still feel like we need to have safeguards for large number computation.</p>
<h4 id="categorical_understandings_of_number_species">Categorical Understandings of Number Species</h4>
<p>Within the Category Theory Zulip community, <a href="https://categorytheory.zulipchat.com/#narrow/stream/266967-general.3A-mathematics/topic/.5BBlog.5D.20Exploration.20of.20Perfect.2C.20Abundant.2C.20and.20Deficient.20Nums">there was another great discussion</a> about viewing these number species through the lens of categories.</p>
<p>David Egolf and John Carlos Baez had some fantastic ideas within that discussion that I&#39;ll excerpt here: </p>
<blockquote>
<p>David: &#91;I&#93; wonder if the concepts of &quot;deficient&quot;, &quot;perfect&quot; and &quot;abundant&quot; generalize to certain kinds of categories. I suppose what we would need is:</p>
<ul>
<li><p>a way to say if one object is a divisor of another object</p>
</li>
<li><p>a way to add objects</p>
</li>
<li><p>a way to compare the size of objects</p>
</li>
</ul>
</blockquote>
<blockquote>
<p>If we have the three things above available to us, then we can</p>
</blockquote>
<p>describe an object \(A\) as &quot;abundant&quot; if the sum of its divisor  objects is larger than \(A\).</p>
<blockquote>
<p>&#91;...&#93; Here&#39;s an initial idea for &quot;categorifying&quot; the above list of three requirements, in a category with coproducts: </p>
<ul>
<li><p>Say that \(A\) divides \(B\) if the coproduct of \(A\) with itself some finite number of times is isomorphic to \(B\)</p>
</li>
<li><p>Let the sum of two objects be their coproduct &#40;so the sum is defined up to isomorphism&#41;</p>
</li>
<li><p>Say that \(A \leq B\) if there is a monomorphism from \(A\) to \(B\)</p>
</li>
</ul>
<p>Applying this to the category of finite sets I think gives us something similar to the usual notions of divisiblity, addition, and ordering for the natural numbers. Another approach for divisibility might be, in a category with products:</p>
<ul>
<li><p>Say that \(A\) divides \(B\) if there exists some \(C\) so that the product of \(A\) and \(C\) is isomorphic to \(B\)</p>
</li>
</ul>
<p>John: Both these approaches work, in the sense that starting from the category of finite sets and functions we get the usual concept of divisibility for natural numbers.</p>
</blockquote>
<p>I encourage you to go see the rest of that discussion there if you found this perspective interesting&#33; There was a lot more spoken of there, but I found this really fascinating. For me, my category theoretic skills still are not up to par just yet to track everything David and John are saying, so I am leaving these excerpts here for future reference to perhaps come back to this.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>A Fun Exploration of Perfect, Abundant, and Deficient Numbers</em>. <a href="https://jacobzelko.com/05102023043333-perfect-abundant-deficit">https://jacobzelko.com/05102023043333-perfect-abundant-deficit</a>. May 10 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Wed, 10 May 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Developing a Robust Computable Phenotype Definition Workflow to Describe Health and Disease in Observational Health Research  ]]>
  </title>
  <link> https://jacobzelko.com/01102023212115-computable-phenotypes/index.html </link>
  <guid> https://jacobzelko.com/01102023212115-computable-phenotypes/index.html </guid>
  <description>
    <![CDATA[  Considerations and discussion on a workflow for developing computable phenotype definitions to define disease  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Developing a Robust Computable Phenotype Definition Workflow to Describe Health and Disease in Observational Health Research</h1>
<p><strong>Date:</strong> April 15 2023</p>
<p><strong>Summary:</strong> Considerations and discussion on a workflow for developing computable phenotype definitions to define disease</p>
<p><strong>Keywords:</strong> #computable #phenotype #observational #health #blog #equity #archive</p>
<h1>Bibliography</h1>
<p>J. S. Zelko et al., “Developing a Robust Computable Phenotype Definition Workflow to Describe Health and Disease in Observational Health Research.” arXiv, Mar. 30, 2023. doi: 10.48550/arXiv.2304.06504.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Background</li><li>What&#39;s the Purpose about This Paper?</li><li>What&#39;s the Process?</li><li>What Are the Trade-offs in Developing a Definition?</li><li>Wrap-Up</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>This small blog post gives a very high level overview of a paper I authored on developing phenotype definitions which are computable and robust to a disease being examined.  <a href="https://arxiv.org/abs/2304.06504">This paper is vailable on arXiv under a CC BY-SA 4.0 license</a>.  Please <a href="https://jacobzelko.com/resources/">reach out to me</a> if you have any issues accessing this paper and I will send you a PDF&#33;</p>
<h3 id="background">Background</h3>
<p>While working on some of my notes one day, I realized I had the beginnings of a paper&#33; In particular, I was working on a note about <a href="https://jacobzelko.com//01072021074632-computable-phenotypes">computable phenotypes</a> and thinking about <a href="https://jacobzelko.com//01022021031334-all-payer-claims">All Payer Claims Databases</a>. Additionally, I am in the course of a current endeavor built on a study I conducted last year called, <a href="https://zenodo.org/record/7779877"><em>A Pilot Characterization Study Assessing Health Equity in Mental Healthcare Delivery within the State of Georgia</em></a> which has made me think strongly about the whole concept of developing definitions of disease.</p>
<p>It just so happened while I was thinking about these ideas, my Georgia Tech Research Institute colleague, Dr. Shenita Freeman, let me know about an upcoming IEEE conference, the <a href="https://web.archive.org/web/20230325190023/http://2023.cbms-conference.org/"><em>2023 IEEE Computer Based Medical Systems conference</em></a>. We both took a look at the opportunity and saw that a paper about computable phenotypes as well as the overall notion of phenotype definitions was a good idea for the conference. I reached out to some collaborators and we were off on writing this paper&#33;</p>
<h3 id="whats_the_purpose_about_this_paper">What&#39;s the Purpose about This Paper?</h3>
<p>What if I told you, how we, as researchers, speak about disease is, wrong – or at least, not quite accurate? For example, if I tell you, &quot;I research diabetes&#33;&quot;, well that is great and a noble cause but that doesn&#39;t help with telling people what it is that you are <em>actually</em> doing. As any diabetic knows, there is a huge difference between Type I Diabetes and Type II Diabetes and that doesn&#39;t consider other species of diabetes such as gestational diabetes, etc. So, it seems to me, that we need some sort of rigorous way to talk about disease, right?</p>
<p>Yes&#33; Many researchers over the years have been defining what are called <a href="https://jacobzelko.com//01072021074632-computable-phenotypes">&quot;phenotypes&quot;</a> which can be things like disease diagnoses &#40;such as Type II Diabetes&#41; and lab measurements &#40;like blood glucose, HbA1C, etc.&#41;. Then, we can build upon these phenotypes into what is called a &quot;phenotype definition&quot;. Simply put, these are a set of instructions that tells us <em>how</em> we are observing these phenotypes. Going back to our rather vague diabetes researcher, they tell us that they are actually investigating Type II Diabetes in geriatric populations within patient data they have access to. Now that is a lot more useful&#33;  A possible phenotype definition for what our researcher friend is doing is: &quot;Patients who are 65 or older with a diagnosis of or related to Type II Diabetes.&quot;</p>
<p>Our researcher is in much better shape on explaining what they have done.  So good that they are on their way to a research conference to present on findings from this definition&#33; Their fellow researchers, as well as some clinicians, at the conference love what they are doing and want to know how they can reproduce this definition with their own patient datasets. And, our researcher friend has documented the process... Right?</p>
<p>Definitely&#33; They have prepared it in the form of a computable phenotype definition&#33; They took the diabetes phenotype definition, looked up medical diagnosis codes, and reviewed patient data that is generally to see what could actually be computed on their patient data. Our researcher chose to implement their computable phenotype definition within a query language like SQL but having the computable phenotype definition on hand, other researchers could either adapt the SQL or re-implement it in another approach they prefer.</p>
<p>And just like that, our researcher now has a much clearer, meaningful, and impactful answer to the question, &quot;What disease are you studying?&quot;</p>
<h3 id="whats_the_process">What&#39;s the Process?</h3>
<p><img src="03302023175728-phenotype-workflow-diagram.png" alt="" /></p>
<p>We spent a lot of time thinking through each step a researcher could potentially take on developing a phenotype definition and this diagram summarized our thinking of the entire process. Additionally, to summarize these steps, we created a checklist that could be followed here for developing a phenotype definition: </p>
<ul>
<li><p>&#91; &#93; Intent</p>
</li>
<li><p>&#91; &#93; Decide on a motivation to guide phenotype definition construction</p>
</li>
<li><p>&#91; &#93; Literature Review</p>
<ul>
<li><p>&#91; &#93; Identify phenotypes</p>
</li>
<li><p>&#91; &#93; Review or validate selected phenotypes</p>
</li>
</ul>
</li>
<li><p>&#91; &#93; Identify Phenotypes</p>
<ul>
<li><p>&#91; &#93; Specify phenotypes</p>
</li>
<li><p>&#91; &#93; Add constraints</p>
</li>
</ul>
</li>
<li><p>&#91; &#93; Translate needs to phenotype definition</p>
<ul>
<li><p>&#91; &#93; Define disqualifiers and/or strengtheners</p>
</li>
<li><p>&#91; &#93; Combine relevant phenotypes with a logic description</p>
</li>
</ul>
</li>
<li><p>&#91; &#93; Develop Computable Phenotype</p>
<ul>
<li><p>&#91; &#93; Review what concepts are consistently present in data</p>
</li>
<li><p>&#91; &#93; Implement phenotype definition in a computable form</p>
</li>
</ul>
</li>
<li><p>&#91; &#93; Execute Definition</p>
<ul>
<li><p>&#91; &#93; Execute computable phenotype definition on database</p>
</li>
</ul>
</li>
<li><p>&#91; &#93; Assess &amp; Revise</p>
<ul>
<li><p>&#91; &#93; Consider assumptions within phenotype definition</p>
</li>
<li><p>&#91; &#93; Revise phenotype definition as needed</p>
</li>
</ul>
</li>
<li><p>&#91; &#93; Do, Monitor, &amp; Evaluate</p>
<ul>
<li><p>&#91; &#93; Answer research question or achieve goal.</p>
</li>
<li><p>&#91; &#93; Repeat phenotype definition checklist as appropriate</p>
</li>
</ul>
</li>
</ul>
<p>To learn more about this checklist, definitely read the second part of the paper&#33; </p>
<h3 id="what_are_the_trade-offs_in_developing_a_definition">What Are the Trade-offs in Developing a Definition?</h3>
<p>The paper further goes into details about some of the trade-offs within developing a phenotype definition.  You may be surprised to hear that there would have to be trade-offs in defining a disease for a population. However, in practice, some counter-intuitive observations emerge:</p>
<p>The first is what I refer to as the paradox of phenotype definitions. A very well-intentioned but somewhat naive approach when thinking about researching specific subpopulations is to define your phenotype definition as specifically as possible. For example, a possible phenotype definition could be &quot;White male patients with depression between the ages of 40 - 49 living within rural Tennessee counties&quot;. However, with each <a href="https://jacobzelko.com//11042022134535-structural-intersectionality">intersecting feature &#40;&quot;axis&quot;&#41; imposed on a population</a>, the resulting number of patients captured is smaller and smaller. Going back to our example, if you have 1000 males in Tennessee, 100 people between the ages of 40-49, and only 50 people within rural parts of the state, then at best, you&#39;ll only end up with 50 people matching your phenotype definition. The question becomes less of how to make a precise definition and more of balancing the trade-off between if a phenotype definition actually represents the population one is investigating and how useful a phenotype definition in practice will be. </p>
<p>The second, is how a phenotype definition can differ from a computable phenotype definition. What I mean by that is a team of clinicians who may want to study a specific disease make a very clinically accurate picture of a patient population in a phenotype definition. However, when an informaticist looks at the definition and tries to implement it into a computable phenotype definition, there may be some aspects of the original phenotype definition that do not map well to a software implementation in practice. For more details, I suggest strongly to look at the first part of this paper as this topic is quite extensive.</p>
<p>Finally, and by no means exhaustive to our list of trade-offs, is the idea of, &quot;Is the data we want to analyze even computable?&quot; An excellent example that had to be cut from the paper for space reasons is the emergence of COVID19. When COVID19 emerged as a threat to humanity, everyone wanted to analyze it and understand it as rapidly as possible. However, the problem was, was that there was a long &#40;in the context of the pandemic&#41; period in which collecting data on COVID19 diagnosis and symptom-type data was not possible. Hospitals would code deaths as related to symptoms exacerbated by COVID19 &#40;myocardial infarction, pneumonia, etc.&#41;, diagnoses related to presented symptoms &#40;bronchitis, stroke, etc.&#41; but never to a formal COVID19 diagnosis. This has since been remedied by emergency measures taken by <a href="https://icd.who.int/en">ICD</a> for medical coding but now, much of the earlier pandemic data, if someone wanted to study COVID19 with any kind of phenotype definition for COVID19, is not accurate. This presents a disconnect between a known problem &#40;COVID19&#41; to be studied and what could actually be studied &#40;the data that is actually available for computation&#41;.</p>
<h3 id="wrap-up">Wrap-Up</h3>
<p>In summary, I sincerely believe that this paper is quite useful in many different areas&#33; Especially, this paper can now serve as a sort of touchstone for interdisciplinary teams when discussing these concepts. </p>
<p>Please let me know if you have any questions and comments or if you notice any egregious errors within the paper in the comments&#33;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Developing a Robust Computable Phenotype Definition Workflow to Describe Health and Disease in Observational Health Research</em>. <a href="https://jacobzelko.com/01102023212115-computable-phenotypes">https://jacobzelko.com/01102023212115-computable-phenotypes</a>. April 15 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 15 Apr 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Chapter 1: Sentential Logic  ]]>
  </title>
  <link> https://jacobzelko.com/04122023013725-sentential-logic/index.html </link>
  <guid> https://jacobzelko.com/04122023013725-sentential-logic/index.html </guid>
  <description>
    <![CDATA[  TODO  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Chapter 1: Sentential Logic</h1>
<p><strong>Date:</strong> April 12 2023</p>
<p><strong>Summary:</strong> TODO</p>
<p><strong>Keywords:</strong> #archive #proofs #logic #discrete #mathematics #deductive #reasoning</p>
<h1>Bibliography</h1>
<p>TODO</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li><ol><li>Deductive Reasoning</li><li>Premises</li><li>Connective Symbols</li><li>Conjunction, Disjunction, and Negation</li><li>Well-Formed Formulas</li><li>Truth Tables</li><li>Equivalent Formulas</li><li>Tautologies</li><li>Contradictions</li><li>Variables</li><li>Free Variables</li><li>Bound Variables</li><li>Sets</li><li>Truth Set</li><li>Elementhood Test</li><li>Set Operations</li><li>Not Sure Section</li><li>Conditional Statements</li><li>Converses and Contrapositives</li><li>Biconditional Statements</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h4 id="deductive_reasoning">Deductive Reasoning</h4>
<p>TODO: Finish creating note for this topic TODO: Create Anki flashcards from note <a href="https://jacobzelko.com/04192023062415-deductive-reasoning">See Note</a></p>
<h4 id="premises">Premises</h4>
<p><a href="https://jacobzelko.com/04222023200544-premises">See Note</a></p>
<h4 id="connective_symbols">Connective Symbols</h4>
<p><a href="https://jacobzelko.com/04222023201022-connective-symbols">See Note</a></p>
<h4 id="conjunction_disjunction_and_negation">Conjunction, Disjunction, and Negation</h4>
<p>TODO: Finish creating note for this topic TODO: Create Anki flashcards from note <a href="https://jacobzelko.com/04222023201456-conjunction">See Note</a></p>
<h4 id="well-formed_formulas">Well-Formed Formulas</h4>
<p>TODO: Finish creating note for this topic TODO: Create Anki flashcards from note <a href="https://jacobzelko.com/04222023201708-well-formed-formulas">See Note</a></p>
<h4 id="truth_tables">Truth Tables</h4>
<p><a href="https://jacobzelko.com/04222023202013-truth-tables">See Note</a></p>
<h4 id="equivalent_formulas">Equivalent Formulas</h4>
<p><a href="https://jacobzelko.com/04222023202244-equivalent-formulas">See Note</a></p>
<h4 id="tautologies">Tautologies</h4>
<p><a href="https://jacobzelko.com/04222023202658-tautologies">See Note</a></p>
<h4 id="contradictions">Contradictions</h4>
<p><a href="https://jacobzelko.com/04222023202728-contradictions">See Note</a></p>
<h4 id="variables">Variables</h4>
<p><a href="https://jacobzelko.com/05222023043713-variables">See Note</a></p>
<h4 id="free_variables">Free Variables</h4>
<p><a href="https://jacobzelko.com/05222023045230-free-variables">See Note</a></p>
<h4 id="bound_variables">Bound Variables</h4>
<p><a href="https://jacobzelko.com/05222023045410-bound-variables">See Note</a></p>
<h4 id="sets">Sets</h4>
<p><a href="https://jacobzelko.com/02212022050947-sets">See Note</a></p>
<h4 id="truth_set">Truth Set</h4>
<p><a href="https://jacobzelko.com/05222023163748-truth-set">See Note</a></p>
<h4 id="elementhood_test">Elementhood Test</h4>
<p><a href="https://jacobzelko.com/05222023163907-elementhood-test">See Note</a></p>
<h4 id="set_operations">Set Operations</h4>
<p><a href="https://jacobzelko.com/05222023050716-set-operations">See Note</a></p>
<p>TODO: Add this theorem somewhere</p>
<h4 id="not_sure_section">Not Sure Section</h4>
<p>Theorem 1.4.7. For any sets A and B, &#40;A ∪ B&#41; &#92; B ⊆ A. Proof. We must show that if something is an element of &#40;A ∪ B&#41; &#92; B, then it must also be an element of A, so suppose that x ∈ &#40;A ∪ B&#41; &#92; B. This means that x ∈ A ∪ B and x ∈ B, or in other words x ∈ A ∨ x ∈ B and x ∈ B. But notice that these statements have the logical form P ∨ Q and ¬Q, and this is precisely the form of the premises of our very first example of a deductive argument in Section 1.1&#33; As we saw in that example, from these premises we can conclude that x ∈ A must be true. Thus, anything that is an element of &#40;A ∪ B&#41; &#92; B must also be an element of A, so &#40;A ∪ B&#41; &#92; B ⊆ A.</p>
<h4 id="conditional_statements">Conditional Statements</h4>
<p><a href="https://jacobzelko.com/05222023164417-condition-statements">See Note</a> <a href="https://jacobzelko.com/05222023183737-conditional-statement-laws">See Note</a></p>
<h4 id="converses_and_contrapositives">Converses and Contrapositives</h4>
<p><a href="https://jacobzelko.com/05222023164529-converses-contrapositives">See Note</a></p>
<h4 id="biconditional_statements">Biconditional Statements</h4>
<p><a href="https://jacobzelko.com/05222023164641-biconditional-statements">See Note</a></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Chapter 1: Sentential Logic</em>. <a href="https://jacobzelko.com/04122023013725-sentential-logic">https://jacobzelko.com/04122023013725-sentential-logic</a>. April 12 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Wed, 12 Apr 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Learning What Every Undergraduate Mathematician Should Know about Proofs  ]]>
  </title>
  <link> https://jacobzelko.com/04012023221538-learning-proofs-beginners/index.html </link>
  <guid> https://jacobzelko.com/04012023221538-learning-proofs-beginners/index.html </guid>
  <description>
    <![CDATA[  Ultralearning project to learn the equivalent of an undergraduate maths or computer science student understanding of proofs and how to write them.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Learning What Every Undergraduate Mathematician Should Know about Proofs</h1>
<p><strong>Date:</strong> April 1 2023</p>
<p><strong>Summary:</strong> Ultralearning project to learn the equivalent of an undergraduate maths or computer science student understanding of proofs and how to write them.</p>
<p><strong>Keywords:</strong> #zettel #archive #project #blog #proof</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Project Goals<ol><li>What Am I Doing?<ol><li>Concepts</li></ol></li></ol></li><li>Roadmap</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>As I am personally moving into applied mathematics for my future graduate studies, I realized I had a deficiency. And that deficiency?  How to prove things&#33; &quot;Proof&quot; was always a somewhat scary thing that I encountered in mathematics every once in a while – but at the same time exciting. So, this post aims to allay these fears once and for all&#33;</p>
<h3 id="project_goals">Project Goals</h3>
<p>This process is adapted from the <a href="https://jacobzelko.com//07082020163004-ultralearning">Ultralearning framework posited by Scott Young</a>.</p>
<h4 id="what_am_i_doing">What Am I Doing?</h4>
<p>Gain an undergraduate level of understanding of proofs and proof creation on par with maths and computer science students.</p>
<h5 id="concepts">Concepts</h5>
<ul>
<li><p>Sets and Set Operations</p>
<ul>
<li><p>Set Notation</p>
</li>
<li><p>Union and Intersection</p>
</li>
<li><p>Complement and Subset</p>
</li>
<li><p>Power Sets</p>
</li>
</ul>
</li>
<li><p>Logical Structure in Proofs</p>
<ul>
<li><p>Implication and Equivalence</p>
</li>
<li><p>Logical Connectives &#40;And, Or, Not&#41;</p>
</li>
<li><p>De Morgan&#39;s Laws</p>
</li>
<li><p>Contrapositive, Converse, and Negation of Conditional Statements</p>
</li>
</ul>
</li>
<li><p>Quantifiers</p>
<ul>
<li><p>Universal Quantifier &#40;For All&#41;</p>
</li>
<li><p>Existential Quantifier &#40;There Exists&#41;</p>
</li>
<li><p>Uniqueness Quantifier &#40;There Exists Exactly One&#41;</p>
</li>
</ul>
</li>
<li><p>Proof Techniques</p>
<ul>
<li><p>Direct Proof</p>
</li>
<li><p>Proof by Contradiction</p>
</li>
<li><p>Proof by Contrapositive</p>
</li>
<li><p>Existence Proofs</p>
</li>
</ul>
</li>
<li><p>Induction and Recursion</p>
<ul>
<li><p>Principle of Mathematical Induction</p>
</li>
<li><p>Strong Induction</p>
</li>
<li><p>Recursive Definitions</p>
</li>
</ul>
</li>
<li><p>Relations and Functions</p>
<ul>
<li><p>Cartesian Product</p>
</li>
<li><p>Equivalence Relations</p>
</li>
<li><p>Partial and Total Orders</p>
</li>
<li><p>Injectivity, Surjectivity, and Bijectivity of Functions</p>
</li>
</ul>
</li>
<li><p>Cardinality and Countability</p>
<ul>
<li><p>Cardinality of Sets</p>
</li>
<li><p>Countable and Uncountable Sets</p>
</li>
<li><p>Diagonalization Argument</p>
</li>
</ul>
</li>
<li><p>Advanced Topics</p>
<ul>
<li><p>Constructive Mathematics</p>
</li>
<li><p>Proof Assistants</p>
</li>
<li><p>Zorn&#39;s Lemma and Well-Ordering Principle</p>
</li>
<li><p>Completeness Axiom and Real Numbers</p>
</li>
</ul>
</li>
</ul>
<h3 id="roadmap">Roadmap</h3>
<p>This is based on the Meta Learning step Young described as well as some additional tweaks of my own:</p>
<ul>
<li><p><strong>Outcomes:</strong> The knowledge and abilities you’ll need to acquire for success.</p>
</li>
<li><p><strong>Topic:</strong> The topic to learn</p>
</li>
<li><p><strong>Done:</strong> If this task has been completed &#40;X&#41; or not yet &#40;cell is empty&#41;</p>
</li>
</ul>
<table><tr><th align="right">Done</th><th align="right">Topic</th><th align="right">Outcomes</th></tr><tr><td align="right">X</td><td align="right">Set Theory</td><td align="right">Understand basic set notation and operations, including subsets, set identities, and Cartesian products.</td></tr><tr><td align="right">X</td><td align="right">Logic</td><td align="right">Understand propositional logic, including truth tables, implications, negations, and quantifiers.</td></tr><tr><td align="right"></td><td align="right">Proof Writing</td><td align="right">Develop skills in writing and constructing mathematical proofs, including direct and indirect proofs, proof by contradiction, proof by contrapositive, and proof by mathematical induction.</td></tr><tr><td align="right"></td><td align="right">Number Theory</td><td align="right">Understand basic number theory concepts, including divisibility, modular arithmetic, prime numbers, the fundamental theorem of arithmetic, the Euclidean algorithm, and Diophantine equations.</td></tr><tr><td align="right"></td><td align="right">Combinatorics</td><td align="right">Develop skills in combinatorial counting principles, including permutations, combinations, and the inclusion-exclusion principle.</td></tr><tr><td align="right"></td><td align="right">Analysis</td><td align="right">Develop skills in calculus, including limits, continuity, differentiation, integration, sequences, and series.</td></tr><tr><td align="right"></td><td align="right">Algebra</td><td align="right">Understand algebraic structures, including groups, rings, and fields.</td></tr></table>
<p>This table describes the very broad topics, resources I&#39;ll use, and the expected learning outcomes for each topic.  As I progress through this table, I will add an &quot;X&quot; to each row I have studied. Furthermore, the table is ordered by level of difficulty. </p>
<table><tr><th align="right">Done</th><th align="right">Skill Level</th><th align="right">Topic</th><th align="right">Concept</th></tr><tr><td align="right">X</td><td align="right">Beginner</td><td align="right">Set Theory</td><td align="right">Set Identities</td></tr><tr><td align="right">X</td><td align="right">Beginner</td><td align="right">Set Theory</td><td align="right">Set Notation</td></tr><tr><td align="right">X</td><td align="right">Beginner</td><td align="right">Set Theory</td><td align="right">Set Operations</td></tr><tr><td align="right">X</td><td align="right">Beginner</td><td align="right">Set Theory</td><td align="right">Sets and Elements</td></tr><tr><td align="right">X</td><td align="right">Beginner</td><td align="right">Set Theory</td><td align="right">Subsets and Proper Subsets</td></tr><tr><td align="right"></td><td align="right">Beginner</td><td align="right">Set Theory</td><td align="right">Cartesian Products</td></tr><tr><td align="right">X</td><td align="right">Beginner</td><td align="right">Logic</td><td align="right">Propositions and Logical Connectives</td></tr><tr><td align="right">X</td><td align="right">Beginner</td><td align="right">Logic</td><td align="right">Truth Tables</td></tr><tr><td align="right">X</td><td align="right">Beginner</td><td align="right">Logic</td><td align="right">Implication and Equivalence</td></tr><tr><td align="right">X</td><td align="right">Beginner</td><td align="right">Logic</td><td align="right">Negation and De Morgan&#39;s Laws</td></tr><tr><td align="right">X</td><td align="right">Beginner</td><td align="right">Logic</td><td align="right">Quantifiers</td></tr><tr><td align="right">X</td><td align="right">Beginner</td><td align="right">Logic</td><td align="right">Logical Implication</td></tr><tr><td align="right">X</td><td align="right">Intermediate</td><td align="right">Proof Writing</td><td align="right">Proof Techniques</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Proof Writing</td><td align="right">Direct Proofs</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Proof Writing</td><td align="right">Indirect Proofs</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Proof Writing</td><td align="right">Proof by Contradiction</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Proof Writing</td><td align="right">Proof by Contrapositive</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Proof Writing</td><td align="right">Proof by Mathematical Induction</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Proof Writing</td><td align="right">Strong Induction</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Proof Writing</td><td align="right">Structural Induction</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Proof Writing</td><td align="right">Proof by Cases</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Proof Writing</td><td align="right">Existence and Uniqueness Proofs</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Proof Writing</td><td align="right">Counterexamples</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Number Theory</td><td align="right">Divisibility and Modular Arithmetic</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Number Theory</td><td align="right">GCD and LCM</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Number Theory</td><td align="right">Prime Numbers</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Number Theory</td><td align="right">Fundamental Theorem of Arithmetic</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Number Theory</td><td align="right">Euclidean Algorithm</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Number Theory</td><td align="right">Diophantine Equations</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Combinatorics</td><td align="right">Counting Principles</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Combinatorics</td><td align="right">Pigeonhole Principle</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Combinatorics</td><td align="right">Permutations and Combinations</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Combinatorics</td><td align="right">Inclusion-Exclusion Principle</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Combinatorics</td><td align="right">Recurrence Relations</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Combinatorics</td><td align="right">Generating Functions</td></tr><tr><td align="right"></td><td align="right">Advanced</td><td align="right">Analysis</td><td align="right">Limits and Continuity</td></tr><tr><td align="right"></td><td align="right">Advanced</td><td align="right">Analysis</td><td align="right">Differentiation</td></tr><tr><td align="right"></td><td align="right">Advanced</td><td align="right">Analysis</td><td align="right">Integration</td></tr><tr><td align="right"></td><td align="right">Advanced</td><td align="right">Analysis</td><td align="right">Sequences and Series</td></tr><tr><td align="right"></td><td align="right">Advanced</td><td align="right">Algebra</td><td align="right">Groups</td></tr><tr><td align="right"></td><td align="right">Advanced</td><td align="right">Algebra</td><td align="right">Rings and Fields</td></tr></table>
<p>This table gets more into exact topics and concepts to master. They have an associated difficult level and overall topic. Moreover, this a synthesis of concepts and topics to be covered based on class syllabi from:</p>
<ul>
<li><p>MA307: Introduction to Proof &#40;taught by Dan Dugger at University of Oregon&#41;</p>
</li>
<li><p>300:T6 Introduction to Mathematical Reasoning &#40;taught by Chloe Urbanski Wawrzyniak at Rutgers University&#41;</p>
</li>
<li><p>Introduction to Proof-based Discrete Mathematics &#40;taught by Matthew Gelvin at University of Chicago&#41;</p>
</li>
<li><p>MATH 301: Introduction To Proofs &#40;taught by Emily Riehl at John Hopkins University&#41;</p>
</li>
</ul>
<p>Additionally, in the construction of this project, I&#39;d like to thank John Carlos Baez for some of his suggestions&#33;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Learning What Every Undergraduate Mathematician Should Know about Proofs</em>. <a href="https://jacobzelko.com/04012023221538-learning-proofs-beginners">https://jacobzelko.com/04012023221538-learning-proofs-beginners</a>. April 1 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Sat, 01 Apr 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
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<item>
  <title>
    <![CDATA[  100 Million Patients: Julia for International Health Studies  ]]>
  </title>
  <link> https://jacobzelko.com/01152023193153-juliacon-study-proposal/index.html </link>
  <guid> https://jacobzelko.com/01152023193153-juliacon-study-proposal/index.html </guid>
  <description>
    <![CDATA[  JuliaCon proposal for giving a full length talk on using Julia in an international healthcare study  ]]>
  </description>  
  
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    <![CDATA[  
<h1>100 Million Patients: Julia for International Health Studies</h1>
<p><strong>Date:</strong> January 15 2023</p>
<p><strong>Summary:</strong> JuliaCon proposal for giving a full length talk on using Julia in an international healthcare study</p>
<p><strong>Keywords:</strong> #archive #juliacon #health #equity #mental #juliahealth</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Original Submission<ol><li>Abstract</li><li>Proposal</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="original_submission">Original Submission</h3>
<h4 id="abstract">Abstract</h4>
<p>This talk explores the use of Julia in a novel observational health research study that explores health equity and mental health in ~100 million patients in an international collaborative effort across more than 4 countries. Contributions and efforts within the JuliaHealth and adjacent communities have made working with this data possible. The approaches and results shared will be valuable for potential researchers and will open new frontiers for high performance computing and health analytics.</p>
<h4 id="proposal">Proposal</h4>
<p>Conducting health research studies at scale to understand the health of specific communities and subpopulations has long been a struggle. This has been due to a variety of issues, such as a lack of international standards in the structure of electronic health records, patient claims data, and diagnoses. Moreover, the investigation of questions related to the topic of health equity &#40;that is, the skewed distribution of health resources or services to various subpopulations seeking healthcare&#41; has been largely stalled due to these problems.</p>
<p>In a previous talk I gave, <a href="https://www.youtube.com/watch?v&#61;5XsWUZX6lFM">Using Julia for Observational Health Research</a>, I presented early work on the success of using Julia within the space of observational health research in utilizing the <a href="https://jacobzelko.com/02082021170353-cdm-standardized-tables/">OMOP Common Data Model</a>. In that previous work, I conducted a pilot study to characterize prevalence rates in mental health care for <a href="https://jacobzelko.com/11042022141714-what-intersectionality-theory/#workable_definitions_of_intersectionality">intersectional subpopulations</a> suffering from bipolar disorder, depression, and/or suicidality. This work utilized novel tooling and approaches created within Julia to successfully analyze data from ~2.5 million Medicaid subscribers within the U.S. state of Georgia. This work earned the <a href="https://www.ohdsi.org/2022-collaborator-showcase">highest awards at the top observational health research venue</a>, drove another successful grant proposal, and resulted in <a href="https://www.nahdo.org/conference/2022/agenda">multiple invited talks</a>. Buoyed by the interest and success of this pilot work, my team and I have moved this project into the next phase: the examination of more than 100 million patients from more than 4 countries across the globe.</p>
<p>In this talk, I will present advances within the JuliaHealth community and the broader Julia ecosystem that have made possible such large scale and federated analyses. In particular, novel JuliaHealth tools such as <a href="https://juliahealth.org/OMOPCDMCohortCreator.jl/">OMOPCDMCohortCreator.jl</a> will be highlighted to show how to analyze &quot;big&quot; <a href="https://jacobzelko.com/10282021140730-real-world-evidence/#united_states_food_and_drug_administration_definitions">real world data</a>, how using Julia can be of huge benefit within this space, and how Julia community members could start using these tools for their own research. As this study now takes place across multiple countries, time will also be spent discussing how Julia lends itself very well to robust analyses using literate programming tools such as <a href="https://quarto.org">Quarto</a> or <a href="https://github.com/JunoLab/Weave.jl">Weave.jl</a> and versioning processes through <a href="https://github.com/JuliaDynamics/DrWatson.jl">DrWatson.jl</a> or <a href="https://github.com/iterative/dvc">Data Version Control</a>, which can be utilized to handle each country&#39;s specific needs. Additionally, I will spend some time discussing issues encountered &#40;both technical and anthropological&#41;, ways that the Julia ecosystem could potentially grow to support future work in this research domain, and opportunities for Julia users to get involved. Finally, I will share my personal thoughts on what open questions there are to be addressed in observational health research and how Julia can be a tool to address public health questions and provide insight into questions of health disparities.</p>
<p>In conclusion, this talk will highlight the real world use of Julia in large-scale health research studies built on real world data. Moreover, it will show the potential of the various ecosystems within Julia to analyze and tackle complex questions within health equity. Through this talk, I invite future Julia users and researchers to join me in pursuing the potential of Julia within the space of observational health research.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>100 Million Patients: Julia for International Health Studies</em>. <a href="https://jacobzelko.com/01152023193153-juliacon-study-proposal">https://jacobzelko.com/01152023193153-juliacon-study-proposal</a>. January 15 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 15 Jan 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
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<item>
  <title>
    <![CDATA[  Asynchronous Workflow Using Julia Tutorial  ]]>
  </title>
  <link> https://jacobzelko.com/01082023043553-julia-async-workflow/index.html </link>
  <guid> https://jacobzelko.com/01082023043553-julia-async-workflow/index.html </guid>
  <description>
    <![CDATA[  A thorough tutorial on how to use Julia for asynchronous workflows to do many things, at once&#33;  ]]>
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  <content:encoded>
    <![CDATA[  
<h1>Asynchronous Workflow Using Julia Tutorial</h1>
<p><strong>Date:</strong> January 7 2023</p>
<p><strong>Summary:</strong> A thorough tutorial on how to use Julia for asynchronous workflows to do many things, at once&#33;</p>
<p><strong>Keywords:</strong> #blog #archive #julia #programming #literate #workflow #asynchronous #weave #browser #sync #node</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Set-Up</li><li>Simple Workflow Process<ol><li>Blocking Workflow</li><li>Asynchronous Workflow</li></ol></li><li>Asynchronous Workflow for Literate Programming</li><li>Conclusion</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>I sometimes find myself wanting to execute a Julia file I have just edited.  This is different than what the excellent <a href="https://github.com/timholy/Revise.jl">Revise.jl package &#40;created by Tim Holy&#41;</a> does in that I want to execute the full file and not just update function definitions. Moreover, I may just want Julia to do something else entirely upon updating a file or directory. This can be very helpful in analysis workflows as well as literate programming. Creating an extended post on my process for this was inspired by a <a href="https://discourse.julialang.org/t/franklin-jl-automatically-evaluate-jl-file-on-change/92580/6">Julia Discourse post I provided an answer to</a>.</p>
<h3 id="set-up">Set-Up</h3>
<p>Here is how I recommend setting up your Julia environment to follow this tutorial &#40;I assume you have Julia installed correctly&#41;:</p>
<ol>
<li><p>Create an empty directory &#40;folder&#41; somewhere on your computer. &#40;NOTE: For sake of this tutorial, I will refer to it as the &quot;test&quot; folder&#41;.</p>
</li>
<li><p>Within your favorite text editor &#40;like Notepad, Vim, VSCode, etc.&#41;, open this directory.</p>
</li>
<li><p>Open and create a file called &quot;tmp.jmd&quot; &#40;NOTE: Keep the file and your editor open as we will be coming back to this file quite a lot&#41;.</p>
</li>
<li><p>Open your Julia REPL within the directory and activate a temporary environment within package mode:</p>
</li>
</ol>
<pre><code class="language-julia-repl">pkg&gt; activate --temp</code></pre>
<ol start="5">
<li><p>Add into this temporary environment the following packages:</p>
</li>
</ol>
<pre><code class="language-julia-repl">pkg&gt; add FileWatching, Weave</code></pre>
<ol start="6">
<li><p>Install node onto your machine.</p>
</li>
</ol>
<p>I suggest using the great tool, <a href="https://github.com/nvm-sh/nvm"><code>nvm</code>, which allows easy management of node versions</a>.</p>
<ol start="7">
<li><p>Install the node package, <a href="https://www.npmjs.com/package/browser-sync"><code>browser-sync</code>, which allows for syncing of webpages based on updates</a>.</p>
</li>
</ol>
<p>Here is the command you can use in your command line: </p>
<pre><code class="language-sh">npm i -g browser-sync</code></pre>
<blockquote>
<p>NOTE: Steps 6 and 7 are not necessary if you are not interested in the section on literate programming</p>
</blockquote>
<h3 id="simple_workflow_process">Simple Workflow Process</h3>
<p>There are two ways to start this workflow.  One blocking &#40;i.e. you cannot use the Julia REPL while working&#41; and another spawning an asynchronous background process to enable you to work with the same REPL. Here is gif showing these workflows in action:</p>
<p><img src="https://jacobzelko.com/assets/01082023043553-watching-example.gif" alt="" /></p>
<h4 id="blocking_workflow">Blocking Workflow</h4>
<p>This creates a synchronous task in your Julia REPL that can then run whatever command you want while you monitor a specific file &#40;or folder&#41;. In this case, I am making the task print a statement that says “Change Detected&#33;” to my REPL whenever there is a change in the file called “tmp.jmd”.</p>
<pre><code class="language-julia">using FileWatchingwhile true 
    watch_file&#40;&quot;./tmp.jmd&quot;&#41;
    println&#40;&quot;Change Detected&#33;&quot;&#41;
end</code></pre>
<p>This workflow is not optimal as this loop continues and locks your REPL from doing anything else. </p>
<h4 id="asynchronous_workflow">Asynchronous Workflow</h4>
<p>This creates an asynchronous task in the background of your Julia REPL that can then run whatever command you want while you monitor a specific file &#40;or folder&#41;. In this case, I am making the task print a statement that says “Change Detected&#33;” to my REPL whenever there is a change in the file called “tmp.jmd”.</p>
<pre><code class="language-julia">using FileWatching@async while true 
    watch_file&#40;&quot;./tmp.jmd&quot;&#41;
    println&#40;&quot;Change Detected&#33;&quot;&#41;
end</code></pre>
<p>From here, you could then still interact with this REPL while this task is running in the background. Furthermore, you can change the line that says <code>println&#40;&quot;Change Detected&#33;&quot;&#41;</code> to whatever command &#40;or commands&#41; you want to trigger.</p>
<h3 id="asynchronous_workflow_for_literate_programming">Asynchronous Workflow for Literate Programming</h3>
<p>This workflow allows one to work with a Julia Markdown document with <code>Weave.jl</code> to preview your work in real time.  There a few steps to start the workflow but here is how it looks when in operation:</p>
<p><img src="https://jacobzelko.com/assets/01082023043553-weave-example.gif" alt="" /></p>
<p>First, execute the following snippet in your Julia REPL to start the asynchronous process to watch for changes and tell Julia to weave the file we will modify:</p>
<pre><code class="language-julia">using FileWatching
using Weave@async while true 
    watch_file&#40;&quot;./tmp.jmd&quot;&#41;
    weave&#40;&quot;./tmp.jmd&quot;&#41;
end</code></pre>
<p>Next, run this in a separate terminal:</p>
<pre><code class="language-sh">browser-sync start --server --start --file &quot;./*.html&quot;</code></pre>
<p>or this command within your Julia REPL &#40;NOTE: This will make your REPL session very cluttered but you can still use your REPL&#41;:</p>
<pre><code class="language-julia">@async run&#40;&#96;browser-sync start --server --start --file &quot;./*.html&quot;&#96;&#41;</code></pre>
<p>At this point, you should see <code>browser-sync</code> spit out a lot of information that looks something like this:</p>
<pre><code class="language-sh">&#91;Browsersync&#93; Access URLs:
 --------------------------------------
       Local: http://localhost:3000
    External: http://192.168.1.186:3000
 --------------------------------------
          UI: http://localhost:3001
 UI External: http://localhost:3001
 --------------------------------------
&#91;Browsersync&#93; Serving files from: ./</code></pre>
<p>You&#39;ll want to grab that URL that looks like <code>http://localhost:3000</code> in the <code>Local</code> spot and then open that in your web browser.  With the URL that you get &#40;it could be on a different port&#41;, navigate to <code>http://localhost:3000/tmp.html</code>.</p>
<p>Finally, when you have this all in place, go ahead and add this code block into the <code>tmp.jmd</code> file that was created:</p>
<pre><code class="language-markdown"># Hello World This is a Julia Markdown file. &#96;&#96;&#96;julia 
2 &#43; 2
&#96;&#96;&#96;</code></pre>
<p>You should see a few things happen.  You&#39;ll see a few messages from the Julia REPL stating that <code>Weave.jl</code> is weaving your document to your desired output. Then, you&#39;ll see <code>browser-sync</code> say something about updating or syncing.  Finally, you will see your browser update to the latest version of your weaved document. </p>
<p>Feel free to play around with this more and see the dynamism of the workflow&#33; I tend to do this when I am iteratively developing reports within Julia and want to tinker within the REPL at the same time I am creating documents. Having to wait for rendering <code>Weave.jl</code> documents and the like was a pain and this took the pain away.</p>
<h3 id="conclusion">Conclusion</h3>
<p>I hope you appreciated this post&#33; If you have any suggestions, comments, or additional workflows this could be used for, please comment below.  May your Julia sessions now be even more supercharged&#33;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Asynchronous Workflow Using Julia Tutorial</em>. <a href="https://jacobzelko.com/01082023043553-julia-async-workflow">https://jacobzelko.com/01082023043553-julia-async-workflow</a>. January 7 2023.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 07 Jan 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  How Big Is a Chunk?  ]]>
  </title>
  <link> https://jacobzelko.com/01072023205813-memory-chunks/index.html </link>
  <guid> https://jacobzelko.com/01072023205813-memory-chunks/index.html </guid>
  <description>
    <![CDATA[  An interesting foundation for the notion of &#39;chunking&#39; in memory and education research  ]]>
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    <![CDATA[  
<h1>How Big Is a Chunk?</h1>
<p><strong>Date:</strong> January 7 2023</p>
<p><strong>Summary:</strong> An interesting foundation for the notion of &#39;chunking&#39; in memory and education research</p>
<p><strong>Keywords:</strong> #chunk #memory #bit #unit ##bibliography #archive</p>
<h1>Bibliography</h1>
<p>H. A. Simon, &quot;How Big Is a Chunk? By combining data from several experiments, a basic human memory unit can be identified and measured.,&quot; Science, vol. 183, no. 4124, pp. 482–488, 1974.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Motivation</li><li>What Are Chunks?</li><li>Benefits of Chunk Generation</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_motivation">Reading Motivation</h3>
<p>In reading a piece by Michael Nielsen on using spaced repetition to process mathematics &#91;1&#93;, he referenced a concept called &quot;chunking&quot;. I hadn&#39;t encountered this notion in education research before and thought it sounded interesting.  So, thus reading the paper.</p>
<h3 id="what_are_chunks">What Are Chunks?</h3>
<p>Loosely based on &#91;2&#93;, chunks are constructs which organize and group together units of information input into memory. These inputs can be of any form and the basic units could be things like phonemes in words, moves in chess, etc. that can then be recalled at once &#40;a Bible verse, a Sicilian Defense, etc.&#41;. The material stored in a chunk is independent of how many chunks can be generated.</p>
<h3 id="benefits_of_chunk_generation">Benefits of Chunk Generation</h3>
<p>The memory span seems to be constrained by a fixed number of chunks &#40;although this number varies wildly in the paper&#41;.  However, we can increase the information stored in memory by increasing the number of units belonging to each chunk. &#91;2&#93;</p>
<p>As regaled by Simon, an example of chunking in action is this:</p>
<blockquote>
<p>I tried to recall after one reading the following list of words: Lincoln, milky, criminal, differential, address, way, lawyer, calculus, Gettysburg. I had no success whatsoever. I should not have expected success, for the list exceeded my span of six or seven words. Then I rearranged the list a bit, as follows:</p>
<ul>
<li><p>Lincoln&#39;s Gettysburg Address</p>
</li>
<li><p>Milky Way</p>
</li>
<li><p>Criminal Lawyer</p>
</li>
<li><p>Differential Calculus</p>
</li>
</ul>
<p>I had no difficulty at all</p>
</blockquote>
<p>The variance between chunks and memory can be attributed to larger chunk sizes based on one&#39;s expertise with a material. &#91;4&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>How Big Is a Chunk?</em>. <a href="https://jacobzelko.com/01072023205813-memory-chunks">https://jacobzelko.com/01072023205813-memory-chunks</a>. January 7 2023.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; M. Nielsen, “Using spaced repetition systems to see through a piece of mathematics,” 2019. http://cognitivemedium.com/srs-mathematics</p>
<p>&#91;2&#93; G. A. Miller, “The magical number seven, plus or minus two: Some limits on our capacity for processing information.” Psychol. Rev., vol. 63, no. 2, p. 81, 1956.</p>
<p>&#91;3&#93; W. G. Chase and H. A. Simon, “The mind’s eye in chess,” in Visual information processing, Elsevier, 1973, pp. 215–281.</p>
<p>&#91;4&#93; H. A. Simon and W. G. Chase, “American scientist,” Scientist, vol. 61, no. 4, pp. 394–403, 1973.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 07 Jan 2023 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Making Math Flashcards Using Spaced Repetition Systems  ]]>
  </title>
  <link> https://jacobzelko.com/01072023041127-making-math-anki/index.html </link>
  <guid> https://jacobzelko.com/01072023041127-making-math-anki/index.html </guid>
  <description>
    <![CDATA[  Composite guide in using spaced repetition systems in learning maths  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Making Math Flashcards Using Spaced Repetition Systems</h1>
<p><strong>Date:</strong> January 6 2023</p>
<p><strong>Summary:</strong> Composite guide in using spaced repetition systems in learning maths</p>
<p><strong>Keywords:</strong> #math #learning #anki #flashcards #spaced #repetition #proofs #theorems #definitions #project #archive #blog</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Introduction</li><li>Principles in Making Anki Cards for Maths</li><li>Card Types<ol><li>Definitions</li><li>Properties</li><li>Theorems<ol><li>Implication Only Theorems</li><li>Implication and Equivalence Theorems</li></ol></li></ol></li><li>Self Testing</li><li>The &quot;Ankification&quot; of Proofs<ol><li>Initial Glances of a Proof</li><li>Building Out a Conceptual Roadmap of a Proof</li><li>Consider the Alternatives of a Proof</li></ol></li><li>Conclusion</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>A major goal in my life is to get better with studying maths. As I fully intend to study mathematics more rigorously, a powerful component and tool in my studying toolbox has been Spaced Repetition Systems like Anki or Memrise. In particular, I wanted to know how to use these sort of systems to study and retain math more effectively in my studies – which sometimes face unexpected interruptions. This post serves as a guide to do just that.</p>
<h3 id="introduction">Introduction</h3>
<p>TODO: Add this discussion into here How I operate is that Anki is a supplement to my learning and not the whole piece. For example, I use Anki to learn definitions and their properties, but then when I work on proofs, I usually scribble that down into my notes and then try my best at linking together different definitions until I have something pleasant. &#91;11:51 AM&#93;TheCedarPrince: I say “linking” intentionally as my notes are stored within a Zettelkasten where each of the definitions I’ve learned are also found. So then I weave together the notes quickly into longer form pieces or proofs or what have you &#91;11:52 AM&#93;TheCedarPrince: Let me know if you have any questions — happy to hear your thoughts&#33;</p>
<h3 id="principles_in_making_anki_cards_for_maths">Principles in Making Anki Cards for Maths</h3>
<p>These principles are curated specifically to think about maths and Anki:</p>
<ol>
<li><p>Anki is a complement to learning – it is not the whole process of learning.</p>
</li>
</ol>
<p>With maths, it is required to sit down, to struggle, and fully work through concepts. Anki is at best a complement to help you remember what you have learned or know.  At worst, a distraction that one ends up frustrated with as one is not seeing the progress they want to see.</p>
<ol start="2">
<li><p>Add small pieces that are worth remembering to Anki.</p>
</li>
</ol>
<p>Keep <a href="https://jacobzelko.com/03092020031618-zettelkasten-principles">Anki pieces as atomic as possible &#40;see the linked note and think of them as Anki cards instead of &quot;zettels&quot;&#41;</a>. &#91;1&#93;</p>
<ol start="3">
<li><p>Be brutally honest in marking an Anki review. &#91;1&#93;</p>
</li>
<li><p>Good cards lead to good results – take the time on making good cards. &#91;1&#93;</p>
</li>
<li><p>If having problems with a certain topic or set of questions, break the topic down to the smallest components possible to better understand the overall topic. &#91;2&#93;</p>
</li>
</ol>
<p>Identify the <a href="https://jacobzelko.com/07082020163004-ultralearning">facts, procedures, and concepts</a> and try to use those in creating smaller supplementary cards to help you with a concept. &#91;3&#93;</p>
<h3 id="card_types">Card Types</h3>
<p>In maths, there are many different types of things to learn. Accordingly, there are a few different types of cards that are useful to make this learning process easier.</p>
<h4 id="definitions">Definitions</h4>
<p>In learning definitions, some useful principles to keep in mind in constructing Anki cards that test definitions are the following:</p>
<ul>
<li><p>A definition can usually be broken down across the following parts:</p>
</li>
</ul>
<pre><code class="language-julia">- The object to be defined
- Its descriptor &#40;this is a unique definition for this object&#41;
- Notation conventions for this object
- Properties associated with the object 
- Any context that the object may be associated with &#40;e.g. when exploring a set, are we talking about sets with in ZFC Set Theory or within the category of &#36;Set&#36;?&#41; &#91;4&#93;</code></pre>
<ul>
<li><p>There can be many different definitions for the same object</p>
</li>
</ul>
<pre><code class="language-julia">- In this case, create different cards for each different definition</code></pre>
<ul>
<li><p>Use clozes liberally to study each part of a given definition &#91;5&#93;</p>
</li>
</ul>
<p>TODO: Include example note outline here</p>
<h4 id="properties">Properties</h4>
<p>TODO: Add what I have learned about property cards TODO: Include example note outline here </p>
<h4 id="theorems">Theorems</h4>
<p>As identified in &#91;4&#93;, there are typically two types of theorems: <em>Implication Only</em> and <em>Implication and Equivalency</em>.</p>
<h5 id="implication_only_theorems">Implication Only Theorems</h5>
<p><em>Implication Only</em> theorems have the quality that the conditions associated with that particular theorem, when satisfied, imply specific conclusions. Similar to making cards for definitions, there are some principles that can be followed for these sorts of cards:</p>
<ul>
<li><p>An <em>Implication Only</em> theorem can be broken down across the following parts:</p>
</li>
</ul>
<pre><code class="language-julia">- The theorem name to be defined
- Its descriptor &#40;the definition for this theorem&#41;
- Any context that the theorem may be associated with 
- Notation conventions for this object
- Conditions of the theorem
- Conclusions from this theorem</code></pre>
<h5 id="implication_and_equivalence_theorems">Implication and Equivalence Theorems</h5>
<p><em>Implication and Equivalence</em> theorems possess the virtue where if an associated set of conditions are met, imply that two or more arbitrary statements can be equivalent. &#91;4&#93; Making cards for this type of theorem is almost identical to making cards for definitions. The only key difference is that one should also add fields for the equivalent statements that result from this theorem.</p>
<h3 id="self_testing">Self Testing</h3>
<p>TODO: Add section based on question cards  TODO: Include example note outline here</p>
<h3 id="the_ankification_of_proofs">The &quot;Ankification&quot; of Proofs</h3>
<p>Michael Nielsen wrote an excellent piece on this process called <a href="https://cognitivemedium.com/srs-mathematics">&quot;Using spaced repetition systems to see through a piece of mathematics&quot;</a>.  Basically, he proposes the use of Anki to deeply understand and study proofs. Personally for me, I am not yet confident in an approach to draft proofs in Anki form. I <a href="https://jacobzelko.com/01162023063211-ankification-proofs">took notes on Nielsen&#39;s &quot;Ankification&quot; and processing of a proof</a> and am including some digested thoughts he had on working through proofs.</p>
<h4 id="initial_glances_of_a_proof">Initial Glances of a Proof</h4>
<ul>
<li><p>Pick out single elements of a proof</p>
</li>
<li><p>Convert these elements to Anki cards</p>
</li>
</ul>
<p>As you pick out these elements and create cards, they may be able to be formulated into definition cards. Or, they may be needed to become their own special sort of card or fact – anything that can help in the learning process.</p>
<h4 id="building_out_a_conceptual_roadmap_of_a_proof">Building Out a Conceptual Roadmap of a Proof</h4>
<p>A proof is not a linear list of statements.  Per Nielsen, it is much more valuable to think of it as relationships between simple observations.  Each of these connections between observations are not just made for no reason. Rather, determine how to find multiple ways to think of the same observation or come to the same observation that is useful for a proof. At this stage, we are beginning to learn our way comfortably around a proof and finding multiple ways to get to each step in a proof is imperative in building that comfort.</p>
<h4 id="consider_the_alternatives_of_a_proof">Consider the Alternatives of a Proof</h4>
<p>Once you have built significant comfort with a proof, keep considering different aspects of the proof. Consider the alternatives within this proof – if this assumption were changed or that context was altered, what are the ramifications of this proof? This process can continue endlessly but should only stop when you are wholly confident in your understandings of a give proof.</p>
<h3 id="conclusion">Conclusion</h3>
<p>To conclude, this short guide is by no means exhaustive. Instead, I made this as a short reference for myself in studying maths using a spaced repetition learning process. I&#39;ll certainly come back to revise this as I continue to work and go through the maths I study to share what works for me.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Making Math Flashcards Using Spaced Repetition Systems</em>. <a href="https://jacobzelko.com/01072023041127-making-math-anki">https://jacobzelko.com/01072023041127-making-math-anki</a>. January 6 2023.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; “&#91;Guide&#93; How to Anki Maths the right way,” Jan. 31, 2016. https://www.reddit.com/r/Anki/comments/43mf83/guide<em>how</em>to<em>anki</em>maths<em>the</em>right_way/ &#40;accessed Jan. 09, 2023&#41;.</p>
<p>&#91;2&#93; M. Nielsen, “Using spaced repetition systems to see through a piece of mathematics,” 2019. http://cognitivemedium.com/srs-mathematics</p>
<p>&#91;3&#93; S. Young, Ultralearning. HarperCollins Publishers, 2019.</p>
<p>&#91;4&#93; L. Thorburn, “Using Anki for mathematics,” Mar. 08, 2020. https://www.lukethorburn.com/anki/ &#40;accessed Jan. 09, 2023&#41;.</p>
<p>&#91;5&#93; A. Milchior, “How I use Anki to learn mathematics - LessWrong,” Dec. 07, 2016. https://www.lesswrong.com/posts/8ZugMc4E5959Xh86i/how-i-use-anki-to-learn-mathematics &#40;accessed Jan. 09, 2023&#41;.</p>
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  <pubDate>Fri, 06 Jan 2023 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  Achieving an Undergraduate Level Understanding of Graph Theory   ]]>
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  <link> https://jacobzelko.com/01012023000122-graph-theory-learning/index.html </link>
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    <![CDATA[  Ultralearning project to learn the equivalent of an undergraduate maths of computer science student understanding of graph theory.  ]]>
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<h1>Achieving an Undergraduate Level Understanding of Graph Theory</h1>
<p><strong>Date:</strong> December 31 2022</p>
<p><strong>Summary:</strong> Ultralearning project to learn the equivalent of an undergraduate maths of computer science student understanding of graph theory.</p>
<p><strong>Keywords:</strong> #zettel #ultralearning #graph #theory #project #archive #blog</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li><ol><li><ol><li>Procedures</li></ol></li></ol></li><li>Roadmap</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3>Motivation</h3>
<p>I have always found graph theory interesting ever since I was exposed to it back in my undergraduate studies at Georgia Tech. I found out about it through SIR Modeling but personally found the structure of graphs far more fascinating than its application to SIR models. Furthermore, as I intend to be pursuing graduate studies in applied mathematics, why not get started with trying to understand it?</p>
<h3>Project Goals</h3>
<p>This process is adapted from the <a href="https://jacobzelko.com/07082020163004-ultralearning">Ultralearning framework posited by Scott Young</a>.</p>
<h4>What Am I Doing?</h4>
<p>Gain an undergraduate level of understanding of graph theory on par with maths and computer science students.</p>
<h5>Concepts</h5>
<ul>
<li><p>Basic concepts:</p>
<ul>
<li><p>Definition of a graph and its components:</p>
<ul>
<li><p>Understand the components of a graph and the differences between directed and undirected graphs.</p>
</li>
</ul>
</li>
<li><p>Subgraphs and isomorphism:</p>
<ul>
<li><p>Understand the definitions of subgraphs and isomorphism and be able to identify and compare them in a given graph.</p>
</li>
</ul>
</li>
<li><p>Directed graphs:</p>
<ul>
<li><p>Understand the definition of a directed graph and be able to represent it using adjacency and incidence matrices.</p>
</li>
</ul>
</li>
<li><p>Graphs and their properties:</p>
<ul>
<li><p>Understand various properties of graphs and be able to apply them to analyze and classify different types of graphs.</p>
</li>
</ul>
</li>
</ul>
</li>
<li><p>Connectivity:</p>
<ul>
<li><p>Paths and circuits:</p>
<ul>
<li><p>Understand the definitions of paths and circuits and be able to identify and construct them in a given graph.</p>
</li>
</ul>
</li>
<li><p>Connectedness and components:</p>
<ul>
<li><p>Understand the concept of connectedness and be able to determine whether a graph is connected or disconnected.</p>
</li>
<li><p>Understand the concept of graph components and be able to identify them in a given graph.</p>
</li>
</ul>
</li>
<li><p>Distance in graphs:</p>
<ul>
<li><p>Understand the concept of distance between vertices and be able to compute it using various measures.</p>
</li>
</ul>
</li>
</ul>
</li>
<li><p>Trees:</p>
<ul>
<li><p>Trees and their properties:</p>
<ul>
<li><p>Understand the definition of a tree and be able to identify and distinguish trees from other types of graphs.</p>
</li>
</ul>
</li>
<li><p>Rooted trees and binary trees:</p>
<ul>
<li><p>Understand the concept of rooted trees and be able to construct and manipulate them.</p>
</li>
<li><p>Understand the concept of binary trees and be able to construct and manipulate them.</p>
</li>
</ul>
</li>
<li><p>Spanning trees</p>
</li>
</ul>
</li>
<li><p>Matrix representations of graphs:</p>
<ul>
<li><p>Adjacency matrices:</p>
<ul>
<li><p>Understand the concept of an adjacency matrix and be able to represent a graph using an adjacency matrix.</p>
</li>
</ul>
</li>
<li><p>Incidence matrices:</p>
<ul>
<li><p>Understand the concept of an incidence matrix and be able to represent a graph using an incidence matrix.</p>
</li>
</ul>
</li>
</ul>
</li>
<li><p>Graph algorithms:</p>
<ul>
<li><p>Breadth-first search:</p>
<ul>
<li><p>Understand the concept of breadth-first search and be able to implement it to traverse a graph.</p>
</li>
</ul>
</li>
<li><p>Depth-first search:</p>
<ul>
<li><p>Understand the concept of depth-first search and be able to implement it to traverse a graph.</p>
</li>
</ul>
</li>
</ul>
</li>
<li><p>Planar graphs:</p>
<ul>
<li><p>Planar graphs and their properties:</p>
<ul>
<li><p>Understand the definition of a planar graph and the properties that distinguish planar graphs from other types of graphs.</p>
</li>
</ul>
</li>
<li><p>Euler&#39;s formula:</p>
<ul>
<li><p>Understand Euler&#39;s formula and be able to apply it to analyze the structure of planar graphs.</p>
</li>
</ul>
</li>
<li><p>Dual graphs:</p>
<ul>
<li><p>Understand the concept of a dual graph and be able to construct the dual of a given planar graph.</p>
</li>
</ul>
</li>
</ul>
</li>
<li><p>Coloring graphs:</p>
<ul>
<li><p>Vertex coloring:</p>
<ul>
<li><p>Understand the concept of vertex coloring and be able to color the vertices of a given graph according to various coloring schemes.</p>
</li>
</ul>
</li>
<li><p>Edge coloring:</p>
<ul>
<li><p>Understand the concept of edge coloring and be able to color the edges of a given graph according to various coloring schemes.</p>
</li>
</ul>
</li>
</ul>
</li>
<li><p>Matchings and factors:</p>
<ul>
<li><p>Matchings:</p>
<ul>
<li><p>Understand the concept of a matching in a graph and be able to identify and construct matchings in a given graph.</p>
</li>
</ul>
</li>
<li><p>Factors:</p>
<ul>
<li><p>Understand the concept of a factor in a graph and be able to identify and construct factors in a given graph.</p>
</li>
</ul>
</li>
</ul>
</li>
<li><p>More advanced topics:</p>
<ul>
<li><p>Hamiltonian cycles:</p>
<ul>
<li><p>Understand the concept of a Hamiltonian cycle and be able to identify and construct Hamiltonian cycles in a given graph.</p>
</li>
</ul>
</li>
<li><p>Network flows:</p>
<ul>
<li><p>Understand the concept of network flows and be able to model and analyze flow problems in graphs.</p>
</li>
</ul>
</li>
<li><p>Graphs and groups:</p>
<ul>
<li><p>Understand the connection between graphs and group theory, and be able to apply group-theoretic techniques to analyze graphs.</p>
</li>
</ul>
</li>
<li><p>Graphs and logic:</p>
<ul>
<li><p>Understand the connection between graphs and logic, and be able to apply logical techniques to analyze graphs.</p>
</li>
</ul>
</li>
<li><p>Graphs and geometry:</p>
<ul>
<li><p>Understand the connection between graphs and geometry, and be able to apply geometric techniques to analyze graphs.</p>
</li>
</ul>
</li>
</ul>
</li>
</ul>
<h5>Facts</h5>
<ul>
<li><p>Definition of a graph and its components:</p>
<ul>
<li><p>Vertices &#40;also called nodes&#41;.</p>
</li>
<li><p>Edges.</p>
</li>
<li><p>Weights.</p>
</li>
<li><p>Labels.</p>
</li>
</ul>
</li>
<li><p>Subgraphs and isomorphism.</p>
</li>
<li><p>Directed graphs and their representations:</p>
<ul>
<li><p>Adjacency matrices.</p>
</li>
<li><p>Incidence matrices.</p>
</li>
</ul>
</li>
<li><p>Graph properties:</p>
<ul>
<li><p>Connected/disconnected.</p>
</li>
<li><p>Bipartite/not bipartite.</p>
</li>
<li><p>Cyclic/acyclic.</p>
</li>
</ul>
</li>
<li><p>Paths and circuits.</p>
</li>
<li><p>Connectedness and components.</p>
</li>
<li><p>Distance between vertices.</p>
</li>
<li><p>Trees:</p>
<ul>
<li><p>Definition.</p>
</li>
<li><p>Unique path between vertices.</p>
</li>
<li><p>Root vertex.</p>
</li>
<li><p>Branches.</p>
</li>
</ul>
</li>
<li><p>Additional topics:</p>
<ul>
<li><p>Matrix representations:</p>
<ul>
<li><p>Adjacency matrices.</p>
</li>
<li><p>Incidence matrices.</p>
</li>
</ul>
</li>
<li><p>Graph algorithms:</p>
<ul>
<li><p>Breadth-first search.</p>
</li>
<li><p>Depth-first search.</p>
</li>
</ul>
</li>
<li><p>Planar graphs and their properties:</p>
<ul>
<li><p>Definition of a planar graph.</p>
</li>
<li><p>Properties that distinguish planar graphs from other types of graphs.</p>
</li>
<li><p>Euler&#39;s formula.</p>
</li>
<li><p>Dual graphs.</p>
</li>
</ul>
</li>
<li><p>Tree properties:</p>
<ul>
<li><p>Rooted trees.</p>
</li>
<li><p>Binary trees.</p>
</li>
</ul>
</li>
</ul>
</li>
</ul>
<h5 id="procedures">Procedures</h5>
<ol>
<li><p>Representing graphs using different notations &#40;e.g. adjacency lists, adjacency matrices, incidence matrices&#41;.</p>
</li>
<li><p>Traversing graphs using different algorithms &#40;e.g. breadth-first search, depth-first search&#41;.</p>
</li>
<li><p>Analyzing the properties of graphs &#40;e.g. connectedness, bipartiteness, acyclicity&#41;.</p>
</li>
<li><p>Finding paths and circuits in graphs.</p>
</li>
<li><p>Identifying and constructing different types of trees &#40;e.g. rooted trees, binary trees&#41;.</p>
</li>
<li><p>Coloring the vertices or edges of a graph according to various coloring schemes &#40;e.g. vertex coloring, edge coloring&#41;.</p>
</li>
<li><p>Finding matchings and factors in graphs.</p>
</li>
<li><p>Identifying and constructing Hamiltonian cycles in graphs.</p>
</li>
<li><p>Modeling and analyzing flow problems in graphs using network flows.</p>
</li>
<li><p>Applying group-theoretic and logical techniques to analyze graphs.</p>
</li>
<li><p>Applying geometric techniques to analyze graphs.</p>
</li>
</ol>
<h3 id="roadmap">Roadmap</h3>
<p>This is based on the Meta Learning step Young described as well as some additional tweaks of my own:</p>
<ul>
<li><p><strong>Outcomes:</strong> The knowledge and abilities you’ll need to acquire for success.</p>
</li>
<li><p><strong>Rationale:</strong> Know exactly why you want to learn a skill or subject.</p>
</li>
<li><p><strong>Resources:</strong> The resources you’ll use when learning.</p>
</li>
<li><p><strong>Done:</strong> If this task has been completed &#40;X&#41; or not yet &#40;cell is empty&#41;</p>
</li>
</ul>
<table><tr><th align="right">Done</th><th align="right">Topic</th><th align="right">Resources</th><th align="right">Outcomes</th></tr><tr><td align="right"></td><td align="right">Definition of a graph and its components</td><td align="right">&#91;1&#93;, &#91;2&#93;</td><td align="right">Graph components; differences between directed and undirected graphs</td></tr><tr><td align="right"></td><td align="right">Subgraphs and isomorphism</td><td align="right">&#91;1&#93;, &#91;2&#93;</td><td align="right">Subgraphs; isomorphism; identify and compare given graphs</td></tr><tr><td align="right"></td><td align="right">Directed graphs</td><td align="right">&#91;2&#93;</td><td align="right">Directed graph; representation using adjacency and incidence matrices</td></tr><tr><td align="right"></td><td align="right">Graphs and their properties</td><td align="right">&#91;1&#93;, &#91;2&#93;</td><td align="right">Properties of graphs; analyze; classify different types of graphs</td></tr><tr><td align="right"></td><td align="right">Paths and circuits</td><td align="right">&#91;1&#93;, &#91;2&#93;</td><td align="right">Paths and circuits; identify and construct given graph</td></tr><tr><td align="right">X</td><td align="right">Connectedness and components</td><td align="right">&#91;1&#93;</td><td align="right">Determine if graph is connected; identify graph components</td></tr><tr><td align="right"></td><td align="right">Distance in graphs</td><td align="right">&#91;1&#93;, &#91;2&#93;</td><td align="right">Vertex distances; compute vertex distances</td></tr><tr><td align="right"></td><td align="right">Trees and their properties</td><td align="right">&#91;1&#93;, &#91;2&#93;</td><td align="right">Tree definitions; identify trees; distinguish trees</td></tr><tr><td align="right"></td><td align="right">Rooted trees and binary trees</td><td align="right">&#91;1&#93;, &#91;2&#93;</td><td align="right">Rooted trees; construct and manipulate rooted trees</td></tr><tr><td align="right"></td><td align="right">Adjacency matrices</td><td align="right">&#91;1&#93;</td><td align="right">Adjacency matrix concept; representation of adjacency matrix</td></tr><tr><td align="right"></td><td align="right">Incidence matrices</td><td align="right">&#91;1&#93;</td><td align="right">Incidence matrix concept; representation of incidence graphs</td></tr><tr><td align="right"></td><td align="right">Breadth-first search</td><td align="right">&#91;1&#93;, &#91;2&#93;</td><td align="right">Breadth-first search concept; graph traversal</td></tr><tr><td align="right"></td><td align="right">Depth-first search</td><td align="right">&#91;1&#93;, &#91;2&#93;</td><td align="right">Depth-first search concept; graph traversal</td></tr><tr><td align="right"></td><td align="right">Planar graphs and their properties</td><td align="right">&#91;1&#93;</td><td align="right">Planar graph definition; properties</td></tr><tr><td align="right"></td><td align="right">Euler&#39;s formula</td><td align="right">&#91;1&#93;, &#91;2&#93;</td><td align="right">Euler&#39;s formula; structure of planar graphs</td></tr><tr><td align="right"></td><td align="right">Dual graphs</td><td align="right">&#91;1&#93;</td><td align="right">Dual graph concept; construction of dual graph</td></tr><tr><td align="right"></td><td align="right">Vertex coloring</td><td align="right">&#91;1&#93;, &#91;2&#93;</td><td align="right">Vertex coloring concept; coloring of graph vertices</td></tr><tr><td align="right"></td><td align="right">Edge coloring</td><td align="right">&#91;1&#93;, &#91;2&#93;</td><td align="right">Edge coloring concept; coloring of graph edges</td></tr><tr><td align="right"></td><td align="right">Matchings</td><td align="right">&#91;1&#93;, &#91;2&#93;</td><td align="right">Matching concept; identification and construction</td></tr><tr><td align="right"></td><td align="right">Factors</td><td align="right">&#91;1&#93;</td><td align="right">Factor concept; identification and construction</td></tr><tr><td align="right"></td><td align="right">Hamiltonian cycles</td><td align="right">&#91;1&#93;, &#91;2&#93;</td><td align="right">Hamiltonian cycle concept; identification and construction</td></tr><tr><td align="right"></td><td align="right">Network flows</td><td align="right">&#91;1&#93;</td><td align="right">Network flow concept; modeling and analysis</td></tr><tr><td align="right"></td><td align="right">Graphs and groups</td><td align="right">&#91;2&#93;</td><td align="right">Graph and group theory connection; analysis</td></tr><tr><td align="right"></td><td align="right">Graphs and logic</td><td align="right">&#91;2&#93;</td><td align="right">Graph and logic connection; analysis</td></tr><tr><td align="right"></td><td align="right">Graphs and geometry</td><td align="right">&#91;2&#93;</td><td align="right">Graph and geometry connection; analysis</td></tr></table>
<p>This table describes the very broad topics, resources I&#39;ll use, and the expected learning outcomes for each topic.  As I progress through this table, I will add an &quot;X&quot; to each row I have studied. Furthermore, the table is ordered by level of difficulty with &quot;Definition of a graph and its components&quot; being the first topic I should learn and &quot;Graphs and geometry&quot; being the more advanced topics I should study. The topics and resources here are based on &#91;1&#93; and &#91;2&#93; with potentially more resources to add in the future.</p>
<table><tr><th align="right">Done</th><th align="right">Skill Level</th><th align="right">Topic</th><th align="right">Concept</th></tr><tr><td align="right"></td><td align="right">Beginner</td><td align="right">Fundamental concepts</td><td align="right">Paths</td></tr><tr><td align="right"></td><td align="right">Beginner</td><td align="right">Fundamental concepts</td><td align="right">Cycles</td></tr><tr><td align="right"></td><td align="right">Beginner</td><td align="right">Fundamental concepts</td><td align="right">Subgraphs</td></tr><tr><td align="right"></td><td align="right">Beginner</td><td align="right">Fundamental concepts</td><td align="right">Isomorphism</td></tr><tr><td align="right"></td><td align="right">Beginner</td><td align="right">Trees</td><td align="right">Spanning trees</td></tr><tr><td align="right"></td><td align="right">Beginner</td><td align="right">Connectivity</td><td align="right">Max-flow Min-cut theorem</td></tr><tr><td align="right"></td><td align="right">Beginner</td><td align="right">Connectivity</td><td align="right">Menger&#39;s theorem</td></tr><tr><td align="right"></td><td align="right">Beginner</td><td align="right">Eulerian and Hamiltonian graphs</td><td align="right">Eulerian and Hamiltonian graphs</td></tr><tr><td align="right"></td><td align="right">Beginner</td><td align="right">Matchings</td><td align="right">Hall&#39;s theorem</td></tr><tr><td align="right"></td><td align="right">Beginner</td><td align="right">Matchings</td><td align="right">Tutte&#39;s 1-factor theorem</td></tr><tr><td align="right"></td><td align="right">Beginner</td><td align="right">Colorings</td><td align="right">Greedy coloring</td></tr><tr><td align="right"></td><td align="right">Beginner</td><td align="right">Colorings</td><td align="right">Chromatic polynomial</td></tr><tr><td align="right"></td><td align="right">Beginner</td><td align="right">Planar graphs</td><td align="right">Euler&#39;s formula</td></tr><tr><td align="right"></td><td align="right">Beginner</td><td align="right">Planar graphs</td><td align="right">Kuratowski&#39;s theorem</td></tr><tr><td align="right"></td><td align="right">Beginner</td><td align="right">Planar graphs</td><td align="right">Equivalents of the 4-color theorem</td></tr><tr><td align="right"></td><td align="right">Beginner</td><td align="right">Ramsey theory</td><td align="right">Ramsey&#39;s theorem</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Structure of 1-, 2-, 3-connected graphs</td><td align="right">Blocks</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Structure of 1-, 2-, 3-connected graphs</td><td align="right">Ear-decomposition</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Structure of 1-, 2-, 3-connected graphs</td><td align="right">Contractible edges</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Perfect graphs</td><td align="right">Bipartite graphs</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Perfect graphs</td><td align="right">Comparability graphs</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Tutte&#39;s synthesis of 3-connected graphs</td><td align="right">Tutte&#39;s synthesis of 3-connected graphs</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Systems of distinct representatives</td><td align="right">Systems of distinct representatives</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Matching polytope</td><td align="right">Matching polytope</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Chinese postman problem</td><td align="right">Chinese postman problem</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Dual graphs</td><td align="right">Dual graphs</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Graphs on surfaces</td><td align="right">Graphs on surfaces</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Highly chromatic graphs of large girth</td><td align="right">Highly chromatic graphs of large girth</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Vizing&#39;s theorem</td><td align="right">Vizing&#39;s theorem</td></tr><tr><td align="right"></td><td align="right">Intermediate</td><td align="right">Erdos-de Bruijn compactness theorem</td><td align="right">Erdos-de Bruijn compactness theorem</td></tr><tr><td align="right"></td><td align="right">Advanced</td><td align="right">Line graphs of bipartite graphs</td><td align="right">Line graphs of bipartite graphs</td></tr><tr><td align="right"></td><td align="right">Advanced</td><td align="right">Chordal graphs</td><td align="right">Chordal graphs</td></tr><tr><td align="right"></td><td align="right">Advanced</td><td align="right">Complements of the above</td><td align="right">Complements of the above</td></tr><tr><td align="right"></td><td align="right">Advanced</td><td align="right">Perfect Graph Theorem</td><td align="right">Perfect Graph Theorem</td></tr><tr><td align="right"></td><td align="right">Advanced</td><td align="right">Dilworth&#39;s theorem</td><td align="right">Dilworth&#39;s theorem</td></tr><tr><td align="right"></td><td align="right">Advanced</td><td align="right">Applications of Ramsey&#39;s theorem</td><td align="right">Applications of Ramsey&#39;s theorem</td></tr><tr><td align="right"></td><td align="right">Advanced</td><td align="right">Lower bound for Ramsey numbers</td><td align="right">Lower bound for Ramsey numbers</td></tr><tr><td align="right"></td><td align="right">Advanced</td><td align="right">Properties of random graphs</td><td align="right">Properties of random graphs</td></tr><tr><td align="right"></td><td align="right">Advanced</td><td align="right">Threshold functions</td><td align="right">Threshold functions</td></tr><tr><td align="right"></td><td align="right">Advanced</td><td align="right">0-1 law</td><td align="right">0-1 law</td></tr></table>
<p>This table gets more into exact topics and concepts to master. They have an associated difficult level and overall topic.  Moreover, this a synthesis of concepts and topics to be covered based on class outlines from:</p>
<ul>
<li><p>COMS W4203: Introduction to Graph Theory &#40;taught by Timothy Sun at Columbia University&#41;</p>
</li>
<li><p>MATH 6014: Graph Theory &#40;taught at Georgia Institute of Technology&#41;</p>
</li>
<li><p>MATH 4022: Introduction to Graph Theory &#40;taught at Georgia Institute of Technology&#41;</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Achieving an Undergraduate Level Understanding of Graph Theory</em>. <a href="https://jacobzelko.com/01012023000122-graph-theory-learning">https://jacobzelko.com/01012023000122-graph-theory-learning</a>. December 31 2022.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; R. Trudeau, Introduction to Graph Theory, Dover. DOVER PUBLICATIONS, INC., 1994.</p>
<p>&#91;2&#93; N. Hartsfield and Ringel, Pearls in Graph Theory A Comprehensive Introduction. DOVER PUBLICATIONS, INC., 1994.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 31 Dec 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  The Analogy between the Relativity of Simultaneity and Information Dissemination  ]]>
  </title>
  <link> https://jacobzelko.com/12242022202340-relativity-information-gaps/index.html </link>
  <guid> https://jacobzelko.com/12242022202340-relativity-information-gaps/index.html </guid>
  <description>
    <![CDATA[  A thought on the analogy between the relativity of simultaneity and information dissemination in consideration of Marshall MacLuhan&#39;s concept of the &#39;action and reaction&#39;  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>The Analogy between the Relativity of Simultaneity and Information Dissemination</h1>
<p><strong>Date:</strong> December 24 2022</p>
<p><strong>Summary:</strong> A thought on the analogy between the relativity of simultaneity and information dissemination in consideration of Marshall MacLuhan&#39;s concept of the &#39;action and reaction&#39;</p>
<p><strong>Keywords:</strong> #action #reaction #analogy #relativity #simultaneity #information #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p><a href="https://jacobzelko.com//05222022225241-understanding-media-extensions">I was motivated to write this thought while writing my review on Marshall MacLuhan&#39;s masterpiece, <em>Understanding Media: The Extensions of Man</em>, while ruminating on his idea that I refer to as the &quot;action and reaction&quot;.</a> <a href="https://jacobzelko.com//12242022211924-simultaneity-relativity">It feels as though there exists an analogy between Einstein&#39;s notion of relativity of simultaneity and MacLuhan&#39;s idea concept of &quot;action and reaction&quot; – this note attempts to explain that analogous relationship.</a></p>
<h3 id="13633231208144796923"></h3>
<ul>
<li><p>Relativity of Simultaneity recap</p>
</li>
</ul>
<pre><code class="language-julia">- Include Gif like this: https://upload.wikimedia.org/wikipedia/commons/7/78/Relativity_of_Simultaneity_Animation.gif?1671940684539</code></pre>
<ul>
<li><p>Recap action and reaction idea</p>
</li>
<li><p>Discuss analogy</p>
</li>
</ul>
<pre><code class="language-julia">- How information from Einstein&#39;s concept is received relative to time
- How action and reaction occurs simultaneously
- How knowledge dissemination and uptake can change over time 
	- Some will be ready to use the knowledge 
	- Others will be slow to adapt 
-</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>The Analogy between the Relativity of Simultaneity and Information Dissemination</em>. <a href="https://jacobzelko.com/12242022202340-relativity-information-gaps">https://jacobzelko.com/12242022202340-relativity-information-gaps</a>. December 24 2022.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 24 Dec 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Relativity of Simultaneity  ]]>
  </title>
  <link> https://jacobzelko.com/12242022211924-simultaneity-relativity/index.html </link>
  <guid> https://jacobzelko.com/12242022211924-simultaneity-relativity/index.html </guid>
  <description>
    <![CDATA[  An overview of Einstein&#39;s concept of Relativity of Simultaneity  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Relativity of Simultaneity</h1>
<p><strong>Date:</strong> December 24 2022</p>
<p><strong>Summary:</strong> An overview of Einstein&#39;s concept of Relativity of Simultaneity</p>
<p><strong>Keywords:</strong> #physics #relativity #einstein #simultaneity #todo #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>I was curious about having a better understanding of Einstein&#39;s notion of &quot;Relativity of Simultaneity&quot;.</p>
<p>See links: </p>
<ul>
<li><p>https://sites.pitt.edu/~jdnorton/papers/AE<em>1905</em>Tsinghua.pdf</p>
</li>
<li><p>https://sites.pitt.edu/~jdnorton/teaching/HPS<em>0410/chapters/Special</em>relativity<em>rel</em>sim/index.html</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Relativity of Simultaneity</em>. <a href="https://jacobzelko.com/12242022211924-simultaneity-relativity">https://jacobzelko.com/12242022211924-simultaneity-relativity</a>. December 24 2022.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 24 Dec 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Zettelkasten  ]]>
  </title>
  <link> https://jacobzelko.com/03092020031549-zettelkasten/index.html </link>
  <guid> https://jacobzelko.com/03092020031549-zettelkasten/index.html </guid>
  <description>
    <![CDATA[  An overview on the Zettelkasten note taking system as made popular by sociologist Niklas Luhmann.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Zettelkasten</h1>
<p><strong>Date:</strong> December 2 2022</p>
<p><strong>Summary:</strong> An overview on the Zettelkasten note taking system as made popular by sociologist Niklas Luhmann.</p>
<p><strong>Keywords:</strong> ##summary ##zettelkasten #learning #research #tool #archive</p>
<h1>Bibliography</h1>
<p>Not available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Selecting Notes for a Zettelkasten</li><li><a href="https://jacobzelko.com/03092020031618-zettelkasten-principles">Principles of Zettelkasten</a></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="selecting_notes_for_a_zettelkasten">Selecting Notes for a Zettelkasten</h3>
<ul>
<li><p><a href="https://jacobzelko.com/03302020005409-note-criteria">Criteria for Creating a Note in the Zettelkasten</a></p>
</li>
</ul>
<pre><code class="language-julia">- **Summary:** Simple criteria for when and how to add notes to the Zettelkasten.
- **Rationale:** Enumerates a robust system for how to add notes to the Zettelkasten</code></pre>
<ul>
<li><p><a href="03172020033742-antifragility">Antifragility</a></p>
</li>
</ul>
<pre><code class="language-julia">- **Summary:** An overview on Nassim Taleb&#39;s thoughts on Antifragility
- **Rationale:** Zettelkastens should be antifragile -- i.e. they thrive off of disorder and chaos and adapt to it meaningfully.</code></pre>
<h3 id="a_hrefhttpsjacobzelkocom03092020031618-zettelkasten-principlesprinciples_of_zettelkasten"><a href="https://jacobzelko.com/03092020031618-zettelkasten-principles">Principles of Zettelkasten</a></h3>
<pre><code class="language-julia">- **Summary:** General principles on how to create and use a Zettelkasten</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Zettelkasten</em>. <a href="https://jacobzelko.com/03092020031549-zettelkasten">https://jacobzelko.com/03092020031549-zettelkasten</a>. December 2 2022.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 02 Dec 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Context-Aware Applications  ]]>
  </title>
  <link> https://jacobzelko.com/03092020071146-context-aware/index.html </link>
  <guid> https://jacobzelko.com/03092020071146-context-aware/index.html </guid>
  <description>
    <![CDATA[  Explains what is a context-aware application.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Context-Aware Applications</h1>
<p><strong>Date:</strong> December 2 2022</p>
<p><strong>Summary:</strong> Explains what is a context-aware application.</p>
<p><strong>Keywords:</strong> ##zettel #ubicomp #computerscience #technology #awarehome #georgiatech #archive</p>
<h1>Bibliography</h1>
<p>Not available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p><strong>Context-aware applications</strong> are technologies that leverage data collected from real-time environments and contexts and act upon this information to create timely actions. This idea was coined by &#91;1&#93; in his paper <a href="03092020035135-kidd-aware-home">The Aware Home: A Living Laboratory for Ubiquitous Computing Research</a></p>
<p>Here is the original quote from @kiddAwareHomeLiving1999:</p>
<blockquote>
<p><em>However, progress in the sensing technologies needs to be matched by progress in supporting the rapid development of applications that use sensed information. These applications are what &#91;are&#93; called <strong>context-aware applications</strong>.</em></p>
</blockquote>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Context-Aware Applications</em>. <a href="https://jacobzelko.com/03092020071146-context-aware">https://jacobzelko.com/03092020071146-context-aware</a>. December 2 2022.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; C. D. Kidd et al., “The Aware Home: A Living Laboratory for Ubiquitous Computing Research,” in Cooperative Buildings. Integrating Information, Organizations, and Architecture, vol. 1670, N. A. Streitz, J. Siegel, V. Hartkopf, and S. Konomi, Eds. Berlin, Heidelberg: Springer Berlin Heidelberg, 1999, pp. 191–198. doi: 10.1007/10705432_17.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 02 Dec 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Aware Homes  ]]>
  </title>
  <link> https://jacobzelko.com/03092020033420-aware-homes/index.html </link>
  <guid> https://jacobzelko.com/03092020033420-aware-homes/index.html </guid>
  <description>
    <![CDATA[  A summary on what is an aware home, its history, and its applications  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Aware Homes</h1>
<p><strong>Date:</strong> December 2 2022</p>
<p><strong>Summary:</strong> A summary on what is an aware home, its history, and its applications</p>
<p><strong>Keywords:</strong> ##summary ##technology #ubicomp #computerscience #technology #ambient #networking #archive</p>
<h1>Bibliography</h1>
<p>Not available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>The idea of the &quot;Aware Home&quot; was created by Kidd et. al. &#91;1&#93; in 1999. As they wrote in their paper, <a href="03092020035135-kidd-aware-home"><em>The Aware Home: A Living Laboratory for Ubiquitous Computing Research</em></a>,</p>
<p>One of the first examples of an &quot;Aware Home&quot; is the <em>Georgia Tech Aware Home</em></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Aware Homes</em>. <a href="https://jacobzelko.com/03092020033420-aware-homes">https://jacobzelko.com/03092020033420-aware-homes</a>. December 2 2022.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; C. D. Kidd et al., “The Aware Home: A Living Laboratory for Ubiquitous Computing Research,” in Cooperative Buildings. Integrating Information, Organizations, and Architecture, vol. 1670, N. A. Streitz, J. Siegel, V. Hartkopf, and S. Konomi, Eds. Berlin, Heidelberg: Springer Berlin Heidelberg, 1999, pp. 191–198. doi: 10.1007/10705432_17.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 02 Dec 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Principles of the Zettelkasten  ]]>
  </title>
  <link> https://jacobzelko.com/03092020031618-zettelkasten-principles/index.html </link>
  <guid> https://jacobzelko.com/03092020031618-zettelkasten-principles/index.html </guid>
  <description>
    <![CDATA[  General principles on how to create and use a Zettelkasten.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Principles of the Zettelkasten</h1>
<p><strong>Date:</strong> December 2 2022</p>
<p><strong>Summary:</strong> General principles on how to create and use a Zettelkasten.</p>
<p><strong>Keywords:</strong> ##zettel #zettelkasten #principles #atomicity #archive</p>
<h1>Bibliography</h1>
<p>Not available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<ol>
<li><p>&quot;Principle of Atomicity&quot; – each zettel should contain only one idea &#40;principle credited to Christian Tietze&#41;.</p>
</li>
<li><p>Each zettel should be self-contained and understandable as a standalone scrap of thought.</p>
</li>
<li><p>Link each zettel and explain why you are linking them together.</p>
</li>
<li><p>Reword gathered information in your own words &#40;unless if it is a verbatim quote or something&#41;.</p>
</li>
<li><p>Add references to each zettel.</p>
</li>
<li><p>Don&#39;t be afraid to add your own ideas to the Zettelkasten – embrace it.</p>
</li>
<li><p>Have no fear when it comes to organization – the order will arise organically in the Zettelkasten.</p>
</li>
<li><p>Never delete a zettel and don&#39;t worry too much about when you create zettels; the more information the better.</p>
</li>
<li><p>Don&#39;t overthink the Zettelkasten. Keep it simple and efficient.</p>
</li>
</ol>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Principles of the Zettelkasten</em>. <a href="https://jacobzelko.com/03092020031618-zettelkasten-principles">https://jacobzelko.com/03092020031618-zettelkasten-principles</a>. December 2 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 02 Dec 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  The Aware Home: A Living Laboratory for Ubiquitous Computing Research  ]]>
  </title>
  <link> https://jacobzelko.com/03092020035135-kidd-aware-home/index.html </link>
  <guid> https://jacobzelko.com/03092020035135-kidd-aware-home/index.html </guid>
  <description>
    <![CDATA[  Gives an overview of the Georgia Tech Aware Home.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>The Aware Home: A Living Laboratory for Ubiquitous Computing Research</h1>
<p><strong>Date:</strong> December 2 2022</p>
<p><strong>Summary:</strong> Gives an overview of the Georgia Tech Aware Home.</p>
<p><strong>Keywords:</strong> ##zettel #awarehome #georgiatech #computerscience #research  #archive</p>
<h1>Bibliography</h1>
<p>Not available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>What Is an Aware Home?</li><li>Applications</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="what_is_an_aware_home">What Is an Aware Home?</h3>
<p>In short, an Aware Home is &quot;a living laboratory for research in ubiquitous computing for everyday activities.&quot; The home at Georgia Institute of Technology was built to enable researchers ready access to explore the home and implement technologies to monitor individuals going throughout the home – these same technologies, the hope is, would be implement in actual people&#39;s homes across the world.</p>
<h3 id="applications">Applications</h3>
<p>Some of the ideas for potential use from the home was to:</p>
<ul>
<li><p>Support the elderly</p>
</li>
<li><p>Find lost objects</p>
</li>
<li><p>Monitor specific parts of the house &#40;front door, kitchen, etc.&#41;</p>
</li>
</ul>
<p>This would be using a technology known as <a href="03092020071146-context-aware"><em>Context-Aware Applications</em></a> &#40;click for more information&#41;.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>The Aware Home: A Living Laboratory for Ubiquitous Computing Research</em>. <a href="https://jacobzelko.com/03092020035135-kidd-aware-home">https://jacobzelko.com/03092020035135-kidd-aware-home</a>. December 2 2022.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 02 Dec 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Health as a Spectrum  ]]>
  </title>
  <link> https://jacobzelko.com/03092020022148-health-spectrum/index.html </link>
  <guid> https://jacobzelko.com/03092020022148-health-spectrum/index.html </guid>
  <description>
    <![CDATA[  An idea that health can exist on a spectrum  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Health as a Spectrum</h1>
<p><strong>Date:</strong> December 2 2022</p>
<p><strong>Summary:</strong> An idea that health can exist on a spectrum</p>
<p><strong>Keywords:</strong> ##zettel #health #society #public #archive</p>
<h1>Bibliography</h1>
<p>Not available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>I have been trying to understand what health actually is.  After much thinking, I have come to the conclusion that health can be thought of as a spectrum.  This is similar to the idea that <a href="03092020022908-education-spectrum">education is a spectrum</a>.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Health as a Spectrum</em>. <a href="https://jacobzelko.com/03092020022148-health-spectrum">https://jacobzelko.com/03092020022148-health-spectrum</a>. December 2 2022.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 02 Dec 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Structural Racism  ]]>
  </title>
  <link> https://jacobzelko.com/11042022160305-structural-racism/index.html </link>
  <guid> https://jacobzelko.com/11042022160305-structural-racism/index.html </guid>
  <description>
    <![CDATA[  What is structural racism and how it emerges in societies  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Structural Racism</h1>
<p><strong>Date:</strong> November 4 2022</p>
<p><strong>Summary:</strong> What is structural racism and how it emerges in societies</p>
<p><strong>Keywords:</strong> #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<h3 id="13633231208144796923"></h3>
<p>As a part of this trend, an emerging line of research has explored the health consequences of structural racism &#40;Gee and Ford 2011; Krieger 2020&#41;, defined by Bailey and colleagues &#40;2017:1453&#41; as “the totality of ways in which societies foster racial discrimination, through mutually reinforcing systems.”</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Structural Racism</em>. <a href="https://jacobzelko.com/11042022160305-structural-racism">https://jacobzelko.com/11042022160305-structural-racism</a>. November 4 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 04 Nov 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  What Is Intersectionality and Intersectionality Theory?  ]]>
  </title>
  <link> https://jacobzelko.com/11042022141714-what-intersectionality-theory/index.html </link>
  <guid> https://jacobzelko.com/11042022141714-what-intersectionality-theory/index.html </guid>
  <description>
    <![CDATA[  An overview and summary on what is intersectionality and  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>What Is Intersectionality and Intersectionality Theory?</h1>
<p><strong>Date:</strong> November 4 2022</p>
<p><strong>Summary:</strong> An overview and summary on what is intersectionality and</p>
<p><strong>Keywords:</strong> ##summary #intersectionality #theory #health #research #equity  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Workable Definitions of Intersectionality</li><li>Why Are Intersectional Approaches Needed?</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>Intersectionality and intersectionality theory is a really cool emerging area of research within health research. Wanted to create this note to summarize intersectionality ideas.</p>
<h3 id="workable_definitions_of_intersectionality">Workable Definitions of Intersectionality</h3>
<ul>
<li><p><strong>Intersectionality</strong> - more describes an approach to disentangle and understand the overlapping systems of oppression that contribute to inequality &#40;Collins 2000; Crenshaw 1991&#41;.</p>
</li>
</ul>
<p>Embedded into this notion are several concepts such as social context and complexity &#40;Collins and Bilge 2020&#41;</p>
<h3 id="why_are_intersectional_approaches_needed">Why Are Intersectional Approaches Needed?</h3>
<ul>
<li><p><a href="https://jacobzelko.com/11042022134535-structural-intersectionality">Structural Intersectionality as a New Direction for Health Disparities Research</a> - An introduction to intersectionality theory and medical sociological ideas at play within health disparities research</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Is Intersectionality and Intersectionality Theory?</em>. <a href="https://jacobzelko.com/11042022141714-what-intersectionality-theory">https://jacobzelko.com/11042022141714-what-intersectionality-theory</a>. November 4 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 04 Nov 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Structural Intersectionality as a New Direction for Health Disparities Research  ]]>
  </title>
  <link> https://jacobzelko.com/11042022134535-structural-intersectionality/index.html </link>
  <guid> https://jacobzelko.com/11042022134535-structural-intersectionality/index.html </guid>
  <description>
    <![CDATA[  An introduction to intersectionality theory and medical sociological ideas at play within health disparities research  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Structural Intersectionality as a New Direction for Health Disparities Research</h1>
<p><strong>Date:</strong> November 4 2022</p>
<p><strong>Summary:</strong> An introduction to intersectionality theory and medical sociological ideas at play within health disparities research</p>
<p><strong>Keywords:</strong> ##bibiliography #intersectionality #sociology #medical #equity #disparity #research  #archive</p>
<h1>Bibliography</h1>
<p>P. Homan, T. H. Brown, and B. King, &quot;Structural Intersectionality as a New Direction for Health Disparities Research,&quot; J Health Soc Behav, vol. 62, no. 3, pp. 350–370, Sep. 2021, doi: 10.1177/00221465211032947.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Motivation</li><li>What Is Intersectionality?</li><li>Why Are Intersectional Approaches Needed?</li><li>How Is Health Impacted by Intersectionality?</li><li>How Can Intersectionality Help Address Health Inequity?</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_motivation">Reading Motivation</h3>
<p>I was suggested this paper by Sarah Gasman of Boston Medical Center. She suggested it as has it holds great relevance to some of my research on health disparities. I must say, this paper was revelatory and plan a future discussion with the study authors due to how incredible it was to my mind.</p>
<h3 id="what_is_intersectionality">What Is Intersectionality?</h3>
<p><a href="https://jacobzelko.com/11042022141714-what-intersectionality-theory">What Is Intersectionality and Intersectionality Theory?</a> - An overview and summary on what is intersectionality and intersectionality theory as an area of health and health disparities research.</p>
<h3 id="why_are_intersectional_approaches_needed">Why Are Intersectional Approaches Needed?</h3>
<p>Prior literature has shown multiple examples where an understanding of intersectionality is useful in a health context: 	- Racism, sexism, and classism are interlocking, mutually constituted, and reinforcing &#40;Collins 2000; Crenshaw 1991; Dill and Zambrana 2009&#41; 	- Effects of racial, gender, and socioeconomic stratification are nonadditive &#40;meaning that racial, gender, and socioeconomic aspects do not all equally contribute to problems in intersectionality &#91;e.g. gender could have more impact than race considerations in certain situations&#93;&#41;. 	It was observed that the greatest racial inequalities in health were found among women and furthermore seen among those women with higher levels of socioeconomic status &#40;Brown et al. 2016; Cummings and Jackson 2008; Warner and Brown 2011&#41;.</p>
<h3 id="how_is_health_impacted_by_intersectionality">How Is Health Impacted by Intersectionality?</h3>
<ul>
<li><p>Intersectionality highlights the possible synergistic effects of inequality on populations &#40;Choo and Ferree 2010; McCall 2005&#41;.</p>
</li>
</ul>
<p>Health is simultaneously shaped by an array of individual-level social positions &#40;Brown et al. 2016; Hargrove 2018; Schulz and Mullings 2006&#41;. 	- Health disparities at the intersection of race and gender can be covered by unidimensional health research. 	They can overlook the unique experiences of women of color and the multiple forms of oppression that impact one&#39;s life &#40;Bowleg 2012; King 1988; Weber 2010&#41;. 	- The relationship between socioeconomic status &#40;SES&#41; and health is racialized. 	Education, income, and wealth seem to be less protective for the health of blacks compared to whites &#40;Assari 2018; Boen, Keister, and Aronson 2020; Colen, Krueger, and Boettner 2018; Hudson et al. 2013&#41;. 	- Attributing perceived interpersonal discrimination to categories &#40;e.g., race, gender, class, and others&#41; is associated with worse health outcomes &#40;Grollman 2012, 2014&#41;.</p>
<h3 id="how_can_intersectionality_help_address_health_inequity">How Can Intersectionality Help Address Health Inequity?</h3>
<ol>
<li><p>Intersectionality highlights social inequalities in many facets of society, across socially constructed groups, and how social inequalities are not caused by social statuses or identities per se but from systems of oppression &#40;Cho, Crenshaw, and McCall 2013&#41;.</p>
</li>
<li><p>Intersectionality demonstrates how social inequalities are shaped by a confluence of factors often obscured by unidimensional approaches &#40;Dill and Zambrana 2009; McCall 2005&#41;.</p>
</li>
<li><p>Intersectionality underscores utility of examining systems within and between social contexts &#40;Choo and Ferree 2010&#41;</p>
</li>
<li><p>Intersectionality highlights the complex nature of the social world.</p>
</li>
</ol>
<p>Intersectionality research itself is characterized by its complexity.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Structural Intersectionality as a New Direction for Health Disparities Research</em>. <a href="https://jacobzelko.com/11042022134535-structural-intersectionality">https://jacobzelko.com/11042022134535-structural-intersectionality</a>. November 4 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 04 Nov 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Fiber Products &#40;Pullbacks&#41;  ]]>
  </title>
  <link> https://jacobzelko.com/10312022005339-fiber-product-pullback/index.html </link>
  <guid> https://jacobzelko.com/10312022005339-fiber-product-pullback/index.html </guid>
  <description>
    <![CDATA[  An overview on fiber products &#40;aka pullbacks&#41; and their features within category theory  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Fiber Products &#40;Pullbacks&#41;</h1>
<p><strong>Date:</strong> October 30 2022</p>
<p><strong>Summary:</strong> An overview on fiber products &#40;aka pullbacks&#41; and their features within category theory</p>
<p><strong>Keywords:</strong> ##summary #fiber #product #pullback #category #theory  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Motivation</li><li>Basics of a Fiber Product</li><li>Basics of the Pullback</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_motivation">Reading Motivation</h3>
<p>Pullbacks are a central part to category theory so naturally, I would like to know more about them&#33;</p>
<h3 id="basics_of_a_fiber_product">Basics of a Fiber Product</h3>
<p>Suppose we have the diagram of sets and functions:</p>
<p>X -f-&gt; Z &lt;-g- Y</p>
<p>Its fiber product is defined as:</p>
\[
X{x}_{Z}Y := \{(x, w, y) | f(x) = w = g(y)\}
\]
<p>Which has two projection functions: </p>
<ol>
<li></li>
</ol>
\[
    \pi_{1}: X {x}_{Z}Y \rightarrow X
    \]
<ol start="2">
<li></li>
</ol>
\[
    \pi_{2}: X {x}_{Z}Y \rightarrow Y
    \]
<p>How I would understand that, is by saying that</p>
<h3 id="basics_of_the_pullback">Basics of the Pullback</h3>
<p>Suppose we have the diagram of sets and functions:</p>
<p>W -pi<em>&#123;1&#125;-&gt; X -f-&gt; Z &lt;-g- Y &lt;-pi</em>&#123;2&#125;- W</p>
<p>The pullback of \(X\) and \(Y\) over \(Z\) is any set \(W\) for which we have an isomorphism W -approx-&gt; X &#123;x&#125;_&#123;Z&#125; Y.  In this case, \(W\) is the pullback.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Fiber Products &#40;Pullbacks&#41;</em>. <a href="https://jacobzelko.com/10312022005339-fiber-product-pullback">https://jacobzelko.com/10312022005339-fiber-product-pullback</a>. October 30 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 30 Oct 2022 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  The Preimage of Elements, Sets, and Functions  ]]>
  </title>
  <link> https://jacobzelko.com/10282022132046-preimage-of-sets/index.html </link>
  <guid> https://jacobzelko.com/10282022132046-preimage-of-sets/index.html </guid>
  <description>
    <![CDATA[  How the preimage appears in elements, sets, and functions  ]]>
  </description>  
  
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    <![CDATA[  
<h1>The Preimage of Elements, Sets, and Functions</h1>
<p><strong>Date:</strong> October 28 2022</p>
<p><strong>Summary:</strong> How the preimage appears in elements, sets, and functions</p>
<p><strong>Keywords:</strong> #archive #sets #preimage #elements #functions #inverse #image</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Motivation</li><li>Basics on the Preimage of a Subset<ol><li>Example</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_motivation">Reading Motivation</h3>
<p>As I have learned and understood what <a href="https://jacobzelko.com//10152022173643-image-of-sets">images</a> are, I am now on my quest to learn what preimages so that I can understand the concept of bundles&#33;</p>
<h3 id="basics_on_the_preimage_of_a_subset">Basics on the Preimage of a Subset</h3>
<p>Given some function \(f : A \rightarrow B\) and the subsets \(C \subseteq A\) and \(D \subseteq B\), then the preimage &#40;or inverse image of a set&#41; is:</p>
\[
f^{-1}(D) = \{x \in A : f(x) \in D\}
\]
<p>Which has the interesting property that the image of each element in \(D\) is in \(C\).</p>
<p>For some reason, admittedly, this was more challenging for me to understand than the image of a subset.  Why that is, I do not know; maybe my brain has a bit of a challenge thinking in reverse?  Personally, I find imagining the notation of the definition more easily followed when it is written like this: </p>
\[
f^{-1}(D) = \{x \in A : f(x) = D\}
\]
<p>Notice the subtle notation change I introduced where I said \(=\) instead of \(\in\) which, although interchangeable here, reads more clearly in my mind. Essentially, you say the condition for this set to be any element, \(x\), that satisfies the equation, \(f(x) = D\). To me, my brain translates that condition into a fun challenge rather than an abstract \(\in D\) which reads less concretely.</p>
<h4 id="example">Example</h4>
<p>Let \(X = \R\), \(Y = \R\), \(V = \{1, 4, 9, 16, 25\}\) which we know the fact that \(V \subseteq Y\), and \(f : x \rightarrow x^{2}\).</p>
<p>Using the definition:</p>
\[
f^{-1}(V) = \{x \in X : f(x) \in V\}
\]
<p>We can create a few equations that can help us generating the set:</p>
\[
x^{2} = 1
\]
\[
x^{2} = 4
\]
\[
x^{2} = 9
\]
\[
x^{2} = 16
\]
\[
x^{2} = 25
\]
<p>And solving these equations gives the following solutions:</p>
\[
x^{2} = 1; x = \pm 1
\]
\[
x^{2} = 4; x = \pm 2
\]
\[
x^{2} = 9; x = \pm 3
\]
\[
x^{2} = 16; x = \pm 4
\]
\[
x^{2} = 25; x = \pm 5
\]
<p>And we can write our solution to the inverse image of the set \(V\) being the following:</p>
\[
\{-5, -4, -3, -2, -1, +1, +2, +3, +4, +5\}
\]
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>The Preimage of Elements, Sets, and Functions</em>. <a href="https://jacobzelko.com/10282022132046-preimage-of-sets">https://jacobzelko.com/10282022132046-preimage-of-sets</a>. October 28 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 28 Oct 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Images of Elements, Sets, and Functions  ]]>
  </title>
  <link> https://jacobzelko.com/10152022173643-image-of-sets/index.html </link>
  <guid> https://jacobzelko.com/10152022173643-image-of-sets/index.html </guid>
  <description>
    <![CDATA[  An overview on determining the image of elements, sets, and functions  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Images of Elements, Sets, and Functions</h1>
<p><strong>Date:</strong> October 15 2022</p>
<p><strong>Summary:</strong> An overview on determining the image of elements, sets, and functions</p>
<p><strong>Keywords:</strong> ##summary #image #set #function #element #subset #domain #range #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Motivation</li><li>The Basics on the Images of Elements<ol><li>Example</li></ol></li><li>The Basics on the Images of Subsets<ol><li>Example</li></ol></li><li>The Basics on the Images of Functions<ol><li>Example</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_motivation">Reading Motivation</h3>
<p>I wanted to understand more about the ideas of images as an avenue to understand bundles.</p>
<h3 id="the_basics_on_the_images_of_elements">The Basics on the Images of Elements</h3>
<p>If there is some element \(x \in X\), and some function \(f\), the image of \(x\) under \(f\) &#40;i.e. the image of the element&#41;, is the value of \(f\) applied to \(x\): </p>
\[
im(x) = f(x)
\]
<p>In other words, I would read this as</p>
<blockquote>
<p>Given some element \(x\), its image is whatever \(f\) maps \(x\) to – the function&#39;s output for \(x\).</p>
</blockquote>
<h4 id="example">Example</h4>
<p>Let \(x = 4\) and \(f : x \rightarrow \sqrt{x}\). What is the image of \(x\)?</p>
<p>Using the definition:</p>
\[
im(x) = f(x)
\]
<p>We can then know: </p>
\[
im(x) = f(4) = 2
\]
<h3 id="the_basics_on_the_images_of_subsets">The Basics on the Images of Subsets</h3>
<p>Given \(f : X \rightarrow Y\) and \(W \subseteq X\), the image of \(W\) under \(f\) is:</p>
\[
im(f(W)) = f(W) = \{f(x) | x \in W \}
\]
<p>How I might read this is:</p>
<blockquote>
<p>If we have two sets, \(X\) and \(Y\), and a subset \(W \subseteq X\) &#40;a subset of \(X\)&#41; while also having a function that maps values of \(X\) to \(Y\) and we want to know the image of the subset, \(W\), we can have \(f\) operate on each element \(x \in W\). This generates the image of \(W\)&#33;</p>
</blockquote>
<h4 id="example__2">Example</h4>
<p>Let \(X = \R\), \(Y = +\R\), \(W = \{1, 2, 3, 4, 5\}\) and \(f : x \rightarrow x^{2}\). What is the image of \(W\) under \(f\)?</p>
<p>Using the generic definition:</p>
\[
im(f(W)) = f(W) = \{f(x) | x \in W \}
\]
<p>We can then write the set as follows:</p>
\[
im(f(W)) = \{1, 4, 9, 16, 25\}
\]
<h3 id="the_basics_on_the_images_of_functions">The Basics on the Images of Functions</h3>
<p>If we have two sets, \(X\) and \(Y\), and a function \(f : X \rightarrow Y\) which sends \(x \in X\) to \(Y\), the image of this function &#40;denoted \(im(f)\)&#41;, is:</p>
\[
im(f) = \{f(x) | x \in X\} \subseteq Y
\]
<p>So, what does that mean or how do we read this? In short, I would read this as: </p>
<blockquote>
<p>Given \(x\) as an element in \(X\), the image of the function \(f\) are the values that \(x\) is mapped to in \(Y\) via \(f\). Because each value is mapped to the domain \(Y\), those values form a subset of \(Y\).</p>
</blockquote>
<p>This explanation may look familiar as the image of a function is actually synonymous to a function&#39;s range&#33; 😱 Typically though, to be a bit more rigorous, the word <em>range</em> is not used in this setting but rather <em>image</em>.</p>
<h4 id="example__3">Example</h4>
<p>Let \(X = \R\), \(Y = +\R\), and \(f : x \rightarrow x^{2}\). What is the image of \(f\)?</p>
<p>Using the generic definition:</p>
\[
im(f) = \{f(x) | x \in X\} \subseteq Y
\]
<p>We can then write the set as follows:</p>
\[
im(f) = \{0, ..., .01, ..., 25, ..., \infin\} \subseteq Y
\]
<p>In this example, based on the definition we have for an \(im(f)\), the \(im(f)\) is all possible outputs that \(f\) can generate which is the <em>range</em> \(+\R\).</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Images of Elements, Sets, and Functions</em>. <a href="https://jacobzelko.com/10152022173643-image-of-sets">https://jacobzelko.com/10152022173643-image-of-sets</a>. October 15 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Sat, 15 Oct 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Clarifying Understanding of Coproducts  ]]>
  </title>
  <link> https://jacobzelko.com/10022022214249-understanding-coproducts/index.html </link>
  <guid> https://jacobzelko.com/10022022214249-understanding-coproducts/index.html </guid>
  <description>
    <![CDATA[  A line of questioning to ensure I understand what coproducts and disjoint unions are  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Clarifying Understanding of Coproducts</h1>
<p><strong>Date:</strong> October 2 2022</p>
<p><strong>Summary:</strong> A line of questioning to ensure I understand what coproducts and disjoint unions are</p>
<p><strong>Keywords:</strong> #question #zulip #category #theory #coproducts #disjoint #union #set  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Motivation</li><li>Question</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_motivation">Reading Motivation</h3>
<p>This is a question to clarify my understand of coproducts as I have largely spent some time in understanding what they are and how to interpret them. </p>
<h3 id="question">Question</h3>
<p>Hi everyone,</p>
<p>I was hoping I could get some clarification on my understanding of coproducts as I <em>believe</em> I have finally wrapped my head around them, but I want to be clear that I do.  To understand coproducts, I started with the set theory definition of a coproduct: </p>
\[
\bigcup_{i \in I} \{(x, i): x \in A_{i}\}
\]
<p>where \(i \in I\) denotes indexing from some <em>index set</em>, \(I\), using the index term, \(i\) and \(A_{i}\) represents some <em>family of sets</em> indexed by \(i\) and \(x\) is some element of the respective \(A_{i}\) set. Then, based on readings from Category Theory texts, I have gathered that the following is equivalent notation to the formal set theory definition: \(\bigsqcup_{i \in I} A_{i}\).  As an example to make sure I am on the right track, here is a small simple problem and its solution according to my understanding:</p>
<blockquote>
<p>Find \(\bigsqcup_{i \in I} A_{i}\) given the following:</p>
</blockquote>
<blockquote>
</blockquote>
\[
> I = \{1, 2, 3\}
> \]
<blockquote>
</blockquote>
\[
> A = \{\{1, 2, 3\}, \{2, 4, 6\}\}
> \]
<blockquote>
<p>Solution: \(\bigsqcup_{i \in I} A_{i} = \{(1, 1), (2, 1), (3, 1), (2, 2), (4, 2), (6, 2)\}\)</p>
</blockquote>
<p>Where I am confused is the following: </p>
<ol>
<li><p>What is the difference between \(\bigsqcup_{i \in I} A_{i}\) and \(\coprod_{i \in I} A_{i}\) and \(X_{1} \coprod X_{2}\) syntax notation &#40;the latter notation concerns two specific sets&#41;?</p>
</li>
</ol>
<p>I have seen all notations when referring to coproducts when viewed from both set theory and category theory perspectives. Is it a matter of aesthetic or is there a functional/semantic difference occurring?</p>
<ol start="2">
<li><p>I have read that coproducts are also known as disjoint unions.</p>
</li>
</ol>
<p>I read about disjoint unions from a set theory perspective and also a category theory perspective but cannot really discern a functional &#40;i.e. practical&#41; difference from coproducts. Are coproducts and disjoint unions really effectively the same idea?</p>
<p>Thanks all and let me know if I can clarify anywhere&#33; </p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Clarifying Understanding of Coproducts</em>. <a href="https://jacobzelko.com/10022022214249-understanding-coproducts">https://jacobzelko.com/10022022214249-understanding-coproducts</a>. October 2 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Sun, 02 Oct 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  A Beginner&#39;s to Master&#39;s Guide in Learning Lua  ]]>
  </title>
  <link> https://jacobzelko.com/10012022184345-learning-lua/index.html </link>
  <guid> https://jacobzelko.com/10012022184345-learning-lua/index.html </guid>
  <description>
    <![CDATA[  My notes on learning the Lua programming language  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>A Beginner&#39;s to Master&#39;s Guide in Learning Lua</h1>
<p><strong>Date:</strong> October 1 2022</p>
<p><strong>Summary:</strong> My notes on learning the Lua programming language</p>
<p><strong>Keywords:</strong> #archive #lua #quick #start #programming</p>
<h1>Bibliography</h1>
<p>https://github.com/medwatt/Notes/blob/main/Lua/Lua<em>Quick</em>Guide.ipynb</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Motivation</li><li>Comments</li><li>Variable Scope<ol><li>Global Scope</li><li>Local Scope</li></ol></li><li>Variable Assignments</li><li>Variable Types</li><li>Math Operators</li><li>Relational Operators</li><li>Logical Operators</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_motivation">Reading Motivation</h3>
<p>I wanted to learn Lua for no other reason than to program my own workflow in neovim. Also, Lua is cool and Just-in-Time compiled like Julia&#33; Plus, it is used for game development so if ever this research thing doesn&#39;t work out, backup plan: become a game developer.</p>
<h3 id="comments">Comments</h3>
<p>How to write comments within Lua&#33;</p>
<pre><code class="language-lua">-- This is my comment&#33; --&#91;&#91; 
	This
	is 
	a 
	multiline 
	comment&#33; 
--&#93;&#93;</code></pre>
<h3 id="variable_scope">Variable Scope</h3>
<h4 id="global_scope">Global Scope</h4>
<p>All variables within lua are considered global by default. Moreover, each call or line within a lua script is run as a chunk.</p>
<pre><code class="language-lua">Var &#61; 10
print&#40; &quot;Global var:&quot;, Var &#41;</code></pre>
<h4 id="local_scope">Local Scope</h4>
<p>To define a large chunk where variables are local in scope, one can create a local scope using a do-end block </p>
<pre><code class="language-lua">do
	local Var &#61; 20
	print&#40; &quot;Local Var:&quot;, Var &#41;
end</code></pre>
<h3 id="variable_assignments">Variable Assignments</h3>
<pre><code class="language-lua">A &#61; A &#43; 1 -- This works 
A &#43;&#61; 1 -- This does not work B &#61; 0 -- This works
C &#61; 0 -- This works
B, C &#61; 0, 0 -- This works
B &#61; C &#61; 0 -- This does not work</code></pre>
<h3 id="variable_types">Variable Types</h3>
<p>There are eight basic types within Lua: </p>
<ul>
<li><p><code>nil</code> - represents absence of data</p>
</li>
<li><p><code>boolean</code></p>
</li>
<li><p><code>number</code> - <code>integer</code> and <code>float</code> both exist as alternative subtypes of <code>number</code></p>
</li>
<li><p><code>string</code></p>
</li>
<li><p><code>userdata</code></p>
</li>
<li><p><code>function</code></p>
</li>
<li><p><code>thread</code></p>
</li>
<li><p><code>table</code></p>
</li>
</ul>
<pre><code class="language-lua">print&#40; type&#40;&quot;Hello&quot;&#41; &#41; -- string 
print&#40; type&#40;10.4 * 3&#41; &#41; -- number 
print&#40; type&#40;&#123;1, 2, 3&#125;&#41; &#41; -- table
print&#40; type&#40;print&#41; &#41; -- function 
print&#40; type&#40;true&#41; &#41; -- boolean 
print&#40; type&#40;nil&#41; &#41; -- nil</code></pre>
<blockquote>
<p>NOTE: Arithmetic operations applied to an object of type <code>string</code> will not fail but instead Lua will attempt to convert that object to a <code>number</code> type.  Vice-versa to this is that if a object of type <code>number</code> is used in a <code>string</code> operation, Lua will attempt to convert that object to a <code>string</code>.</p>
</blockquote>
<h3 id="math_operators">Math Operators</h3>
<pre><code class="language-lua">A &#61; 100
B &#61; 2 print&#40; A &#43; B &#41; -- Addition
print&#40; A - B &#41; -- Subtraction 
print&#40; A * B &#41; -- Multiplication
print&#40; A ^ B &#41; -- Exponents 
print&#40; A / B &#41; -- Division
print&#40; A // B &#41; -- Floor
print&#40; A &#37; B &#41; -- Modulus
print&#40; -A &#41; -- Negation</code></pre>
<h3 id="relational_operators">Relational Operators</h3>
<pre><code class="language-lua">A &#61; 20
B &#61; 4print&#40;A &#61;&#61; B&#41; -- false
print&#40;A ~&#61; B&#41; -- true
print&#40;A &gt; B&#41; -- true
print&#40;A &lt; B&#41; -- false
print&#40;A &gt;&#61; B&#41; -- true
print&#40;A &lt;&#61; B&#41; -- false</code></pre>
<h3 id="logical_operators">Logical Operators</h3>
<pre><code class="language-lua">print&#40;true and 10&#41; -- evaluates to &#96;10&#96;
print&#40;10 and true&#41; -- evaluates &#96;true&#96;
print&#40;false and 10&#41; -- short circuits to &#96;false&#96;
print&#40;false or 10&#41; -- evaluates to &#96;10&#96;
print&#40;nil and 10&#41; -- evaluates to &#96;nil&#96;
print&#40;nil or 10&#41; -- evaluates to &#96;10&#96;
print&#40;false and nil&#41; -- evaluates to &#96;false&#96;
print&#40;false and not&#40;nil&#41;&#41; -- evaluates to &#96;false&#96;</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>A Beginner&#39;s to Master&#39;s Guide in Learning Lua</em>. <a href="https://jacobzelko.com/10012022184345-learning-lua">https://jacobzelko.com/10012022184345-learning-lua</a>. October 1 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Sat, 01 Oct 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Indexed Sets &#40;Or How to Index Sets&#41;  ]]>
  </title>
  <link> https://jacobzelko.com/09302022040126-indexed-sets/index.html </link>
  <guid> https://jacobzelko.com/09302022040126-indexed-sets/index.html </guid>
  <description>
    <![CDATA[  An attempt at understanding what are indexed sets and the various forms index sets can take  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Indexed Sets &#40;Or How to Index Sets&#41;</h1>
<p><strong>Date:</strong> September 30 2022</p>
<p><strong>Summary:</strong> An attempt at understanding what are indexed sets and the various forms index sets can take</p>
<p><strong>Keywords:</strong> #set #theory #index #infinite #finite #interval  #archive</p>
<h1>Bibliography</h1>
<p>Indexed Sets, &#40;Nov. 27, 2020&#41;. Accessed: Oct. 01, 2022. &#91;Online Video&#93;. Available: https://www.youtube.com/watch?v&#61;ZoR93jR9Ok0</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Motivation</li><li>Building an Intuition for Index Sets<ol><li>Union Example Where \(I\) Is a Finite Set of Integers</li><li>Union Example Where \(I\) Is a Countably Infinite Set of Integers</li><li>Union Example Where \(I\) Is an Interval</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_motivation">Reading Motivation</h3>
<p>I was very confused about nomenclature concerning indexed sets and how to interpret them.</p>
<h3 id="building_an_intuition_for_index_sets">Building an Intuition for Index Sets</h3>
<p>An index set \(I\) can be nearly anything. The following examples build intuition to that statement:</p>
<h4 id="union_example_where_i_is_a_finite_set_of_integers">Union Example Where \(I\) Is a Finite Set of Integers</h4>
<p>For example, to build an initial intuition on what an index set actually is, we can imagine it as a set of integers. For the following problem, let&#39;s find the union of three different sets using the index set \(I\): </p>
<p>Let the following hold:</p>
\[
I = \{1, 2, 3\}
\]
\[
A_{1} = \{0, 1, 2, 3, 4, 5\}
\]
\[
A_{2} = \{-3, -2, -1, 0, 1, 2\}
\]
\[
A_{3} = \{-4, -2, 0, 2, 4\}
\]
<p>The intersection of these three sets can be denoted as follows: \(\bigcup_{i \in I} A_{i}\). This syntax is also synonymous with the following syntax that may be more easily read: \(\bigcup_{i=1}^{3} A_{i}\).  Either syntax means loosely, &quot;create the union between sets \(A_{1}\) through \(A_{n}\).&quot; The solution to this problem would be:</p>
\[
\bigcup_{i \in I} A_{i} = \bigcup_{i=1}^{3} A_{i} = \{-4, -3, -2, -1, 0, 1, 2,3, 4, 5\}
\]
<p>.</p>
<blockquote>
<p>NOTE: \(A_{1}, A_{2}, A_{3}\) are independent sets and do not form a family of sets.</p>
</blockquote>
<h4 id="union_example_where_i_is_a_countably_infinite_set_of_integers">Union Example Where \(I\) Is a Countably Infinite Set of Integers</h4>
<p>For example, one can also have an index set be infinite&#33; 😱 For the following problem, let&#39;s find the union of three different sets using the index set \(I\): </p>
<p>Let the following hold:</p>
\[
I = \N = \{1, 2, 3, \dots \}
\]
\[
A_{i} = \{-i, 0, i\}
\]
<p>In this case, \(A_{i}\) is a condition that prescribes the formation of independent sets.  So from \(A_{i}\) we could get the following sets using the infinite index set, \(I\):</p>
<p>:\(A*{i} = {-i, 0, i} =  \begin{cases} 	A*{1} = {-1, 0, 1}, i = 1 \
	A*{2} = {-2, 0, 2}, i = 2 \
	A*{3} = {-3, 0, 3}, i = 3 \
	\phantom{––} \dots \end{cases} :\)</p>
<p>The solution to this is as follows:</p>
\[
\bigcup_{i \in I} A_{i} = \bigcup_{i \in 1}^{\N} A_{i} = \Z
\]
<h4 id="union_example_where_i_is_an_interval">Union Example Where \(I\) Is an Interval</h4>
<p>Another form of index sets can be that they emerge over a interval and not discretely defined values – which sounds a bit terrifying at first&#33; 🤯 So, to delve into this, let&#39;s consider:</p>
<p>Let the following hold true:</p>
\[
I = [-1, 1]
\]
\[
A_{i} = \{i\} \times [0, 1]
\]
<p>, where \(A_{i}\) is a subset of \(\R^{2}\) &#40;i.e. \(A_{i} \subseteq R^{2}\)&#41;.</p>
<p>If we ask what is the union of \(A_{i}\), given that \(I\) is uncountably infinite, the answer would be: </p>
\[
\bigcup_{i \in I} A_{i} = [-1, 1] \times [0, 1]
\]
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Indexed Sets &#40;Or How to Index Sets&#41;</em>. <a href="https://jacobzelko.com/09302022040126-indexed-sets">https://jacobzelko.com/09302022040126-indexed-sets</a>. September 30 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 30 Sep 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Family of Sets  ]]>
  </title>
  <link> https://jacobzelko.com/09302022033236-family-sets/index.html </link>
  <guid> https://jacobzelko.com/09302022033236-family-sets/index.html </guid>
  <description>
    <![CDATA[  A simple overview on what a family of sets actually is  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Family of Sets</h1>
<p><strong>Date:</strong> September 29 2022</p>
<p><strong>Summary:</strong> A simple overview on what a family of sets actually is</p>
<p><strong>Keywords:</strong> ##summary #set #family #subset  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Motivation</li><li>Family of Sets</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_motivation">Reading Motivation</h3>
<p>I am having trouble reading some set theoretic notation. Hoping by gaining better familiarity with family of sets, I can understand notation better. </p>
<h3 id="family_of_sets">Family of Sets</h3>
<p>In brief, a family of sets could be the following:</p>
<p><strong>Definition 1:</strong> A family of sets, \(F\), could be a set of subsets over a set \(X\). An example of this would be the following scenario:</p>
<p>Let \(X = {1, 2, 3, 4}\)</p>
\[
F = \{\{\emptyset\}, \{1, 2 \},\{3, 4\}\}
\]
\[
F
\]
<p>is non-exhaustive as there could be more subsets derived from \(X\).</p>
<p><strong>Definition 2:</strong> A family of sets, \(F\), could be a set of sets where each set is independent from the others. An example of this would be the following scenario:</p>
<p>Let \(A = \{1, 2, 3\}\), \(B = \{4, 5, 6\}\), and \(C = \{2, 4, 6\}\)</p>
\[
F = \{A, B, C\} = \{\{1, 2, 3\}, \{4, 5, 6\}, \{2, 4, 6\}\}
\]
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Family of Sets</em>. <a href="https://jacobzelko.com/09302022033236-family-sets">https://jacobzelko.com/09302022033236-family-sets</a>. September 29 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 29 Sep 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  What Is a Topological Space?  ]]>
  </title>
  <link> https://jacobzelko.com/09172022051900-what-topology/index.html </link>
  <guid> https://jacobzelko.com/09172022051900-what-topology/index.html </guid>
  <description>
    <![CDATA[  A brief understanding of my knowledge on topological spaces  ]]>
  </description>  
  
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    <![CDATA[  
<h1>What Is a Topological Space?</h1>
<p><strong>Date:</strong> September 17 2022</p>
<p><strong>Summary:</strong> A brief understanding of my knowledge on topological spaces</p>
<p><strong>Keywords:</strong> ##summary #algebraic #topology #space #topological #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Motivation</li><li>Topological Spaces</li><li>Examples of Topologies on a Set \(X\)<ol><li>Trivial &#40;Indiscrete&#41; Topology on \(X\)</li><li>General Topology on \(X\)</li><li>The Discrete Topology of \(X\)</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_motivation">Reading Motivation</h3>
<p>I wanted to learn more about algebraic topology so as to further understand the notion of cross products. Cross products are albeit a simple mechanism but I was curious to see the notion of them pop up so much. Much more so seeing the idea propagate to topologies which sparked my interested about topologies.</p>
<h3 id="topological_spaces">Topological Spaces</h3>
<p>A topological space, to my understanding is a kind of embellished set.  Embellished in the sense that there exists an underlying set wherein a topology enriches the set. In short, a topology, \(\tau\), on a nonempty set \(X\) is a collection of subsets of \(X\) that also belong to \(\tau\). These subsets are referred to as &quot;open sets&quot; where:</p>
<ol>
<li></li>
</ol>
\[
    \emptyset
    \]
<p>and &#36;X&#36; are open. Also can be defined as &#36;\emptyset, X \in \tau&#36;</p>
<ol start="2">
<li><p>Union of any number of open sets within \(\tau\) also belong to \(\tau\)</p>
</li>
<li><p>Intersection of a defined number of open sets in \(\tau\) also belong to \(\tau\)</p>
</li>
</ol>
<p>If these conditions are met, then a topology \(\tau\) on \(X\) is often written as \((X, \tau)\). If \(\tau\) or the fact that we are working with topologies is obvious, then one can refer to \((X, \tau)\) as the &quot;topology on \(X\)&quot;. </p>
<blockquote>
<p>NOTE: If there are two sets, \(A = \{1, 2, 3\}\) and \(B = \{2, 3, 4\}\), the notation \(A \backslash B\) &#40;read as &quot;A drop B&quot;&#41; is equal to \(A \backslash B = \{1\}\). This notation is shorthand for \(A \cap B^{c}\). In this case, this set would be known as a closed set under \((X, \tau)\).</p>
</blockquote>
<h3 id="examples_of_topologies_on_a_set_x">Examples of Topologies on a Set \(X\)</h3>
<h4 id="trivial_indiscrete_topology_on_x">Trivial &#40;Indiscrete&#41; Topology on \(X\)</h4>
<p>If \(X = \{1, 2, 3, 4\}\) then the trivial topology is \(\tau = \{\{\}, \{1, 2, 3, 4\}\} = \{\emptyset, X\}\}\).</p>
<blockquote>
<p>NOTE: In this case, \(\tau = \{\emptyset, X\}\}\) is referred to as a &quot;family&quot;. A &quot;family&quot; is a set of subsets for a given set &#40;in this case, \(X\)&#41;.</p>
</blockquote>
<h4 id="general_topology_on_x">General Topology on \(X\)</h4>
<p>If \(X = \{1, 2, 3, 4\}\) then the family \(\tau = \{\emptyset, \{2\}, \{1, 2\}, \{2, 3\}, \{1, 2, 3\}, X\}\) forms another topology.</p>
<blockquote>
<p>NOTE: &quot;General&quot; in the header for this section just refers to possible subsets that can be formed out of the set \(X\) to form another topology. Additional subsets could be \(\{1\}, \{1, 4\}\), etc.</p>
</blockquote>
<h4 id="the_discrete_topology_of_x">The Discrete Topology of \(X\)</h4>
<p>If \(x = \{1, 2, 3, 4\}\), the discrete topology of \(X\) is the power set of \(X\) which is the family \(\tau = \wp(X)\). \(\wp(X)\) consists of all possible subsets of \(X\).</p>
<p>A simple way of calculating the power set of this topology is with the Julia snippet: </p>
<pre><code class="language-julia">using Combinatorics℘ &#61; powerset
X &#61; &#91;1, 2, 3, 4&#93;
℘&#40;X&#41; |&gt; collect</code></pre>
<p>Which would give the following possible subsets of X:</p>
<pre><code class="language-julia">&#91;&#93;,
&#91;1&#93;,
&#91;2&#93;,
&#91;3&#93;,
&#91;4&#93;,
&#91;1, 2&#93;,
&#91;1, 3&#93;,
&#91;1, 4&#93;,
&#91;2, 3&#93;,
&#91;2, 4&#93;,
&#91;3, 4&#93;,
&#91;1, 2, 3&#93;,
&#91;1, 2, 4&#93;,
&#91;1, 3, 4&#93;,
&#91;2, 3, 4&#93;,
&#91;1, 2, 3, 4&#93;</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Is a Topological Space?</em>. <a href="https://jacobzelko.com/09172022051900-what-topology">https://jacobzelko.com/09172022051900-what-topology</a>. September 17 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 17 Sep 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Coproducts &#40;Disjoint Unions&#41;  ]]>
  </title>
  <link> https://jacobzelko.com/09162022162129-coproducts-disjoints/index.html </link>
  <guid> https://jacobzelko.com/09162022162129-coproducts-disjoints/index.html </guid>
  <description>
    <![CDATA[  Exploration on the disjoint union of sets.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Coproducts &#40;Disjoint Unions&#41;</h1>
<p><strong>Date:</strong> September 16 2022</p>
<p><strong>Summary:</strong> Exploration on the disjoint union of sets.</p>
<p><strong>Keywords:</strong> ##summary #category #theory #sets #union #archive</p>
<h1>Bibliography</h1>
<p>David Spivak, Category Theory for Scientists, Old Version. 2013.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Motivation</li><li>Disjoint Union of Sets Intuition</li><li>Coproduct of a Set and Itself</li><li>Set Theory Definition</li><li>Notation in Category Theory</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_motivation">Reading Motivation</h3>
<p>To learn and understand the concept of coproducts within the context of category theory. Also, I came across the symbolic notation for what disjoint unions are and wanted to understand what the notation fully meant.</p>
<h3 id="disjoint_union_of_sets_intuition">Disjoint Union of Sets Intuition</h3>
<p>To build an intuitive sense of what a disjoint union is, consider the following.</p>
<p>Given two sets, \(X = \{a, b, c, d\}\), \(Y = \{1, 2, 3\}\), the coproduct of these sets would be: </p>
\[
X \coprod Y := \{a, b, c, d, 1, 2, 3\}
\]
<p>This also is referred to as the &quot;disjoint union of sets&quot;. Although, it is important to note that an important aspect of this notation above is missing from the coproduct which will be explained in the section on a coproduct of a set and itself.</p>
<h3 id="coproduct_of_a_set_and_itself">Coproduct of a Set and Itself</h3>
<p>If given set \(X = \{a, b, c, d\}\), the coproduct of \(X\) and itself would look like this:</p>
\[
X \coprod X \cong \{i_{1}a, i_{1}b, i_{1}c, i_{1}d, i_{2}a, i_{2}b, i_{2}c, i_{2}d\}
\]
<p>In this case, \(i_{1}\) and \(i_{2}\) are unique inclusion functions that map each set in a coproduct to its disjoint union. The inclusion functions in my opinion, act as a sort of metadata that helps one know where elements of a disjoint union comes from.</p>
<blockquote>
<p>NOTE: The author, David Spivak, in <em>Category Theory for the Sciences</em> presented the above notation for a coproduct of \(X\) and itself.  Personally, I found this notation very confusing and feel the formal set theory definition explained in the section on the set theory definition of a coproduct to be more useful here.  If we revisited the operation \(X \coprod X\), I am more inclined to write the problem and solution as follows:</p>
<p>Let \(X = X_{1} = X_{2}\), the value of \(X_{1} \coprod X_{2}\) is: \(X_{1} \coprod X_{2} \cong \{(a, 1), (b, 1), (c, 1), (d, 1), (a, 2), (b, 2), (c, 3), (d, 4)\}\)</p>
</blockquote>
<h3 id="set_theory_definition">Set Theory Definition</h3>
<p>This big honking formulation is the formal set theoretic definition of a coproduct:</p>
\[
\bigsqcup_{i \in I} A_{i} = \bigcup_{i \in I} \{(x, i): x \in A_{i}\}
\]
<p>What this says loosely is that given a <a href="https://jacobzelko.com/09302022033236-family-sets">family of sets</a> \(A\) indexed by the <a href="https://jacobzelko.com/09302022040126-indexed-sets">index set \(I\)</a>, a coproduct is a set that enumerates every element in \(A_{i}\) with its associated set. Referencing the example on a coproduct of a set and itself:</p>
<p>Given: \(X = \{a, b, c, d\}\)</p>
<p>Let \(X = X_{1} = X_{2}\), the value of \(X_{1} \coprod X_{2}\) is: </p>
\[
X_{1} \coprod X_{2} \cong \{(a, 1), (b, 1), (c, 1), (d, 1), (a, 2), (b, 2), (c, 3), (d, 4)\}
\]
<p>The coproduct is a set which enumerates every element in both set \(X_{1}\) and \(X_{2}\) as a tuple with an associated index to say what set this element originated from &#40;i.e. \((a, 1)\) is the same \(a\) from set \(X_{1}\)&#41;.</p>
<h3 id="notation_in_category_theory">Notation in Category Theory</h3>
<p>It is important to make clear that in category theory, these two syntaxes are seen:</p>
\[
\coprod_{i \in I} X_{i}
\]
<p>and \(\bigsqcup_{i \in I} X_{i}\)</p>
<p>Both refer to a disjoint union and both can be read as &quot;the disjoint union of the family of sets \(X_{i}\) indexed by the index set, \(I\).&quot; Here, when we say <a href="https://jacobzelko.com//09302022033236-family-sets">&quot;family of sets&quot;, they can either be a &quot;set of subsets over a set \(X\)&quot; or a &quot;set of sets \(X\) where each set could be independent of one another.&quot;</a></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Coproducts &#40;Disjoint Unions&#41;</em>. <a href="https://jacobzelko.com/09162022162129-coproducts-disjoints">https://jacobzelko.com/09162022162129-coproducts-disjoints</a>. September 16 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 16 Sep 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Introduction To Streaming for Data Scientists  ]]>
  </title>
  <link> https://jacobzelko.com/09092022205654-streaming-data-scientists/index.html </link>
  <guid> https://jacobzelko.com/09092022205654-streaming-data-scientists/index.html </guid>
  <description>
    <![CDATA[  What is streaming data and how it can be used in data science and other applications  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Introduction To Streaming for Data Scientists</h1>
<p><strong>Date:</strong> September 9 2022</p>
<p><strong>Summary:</strong> What is streaming data and how it can be used in data science and other applications</p>
<p><strong>Keywords:</strong> #archive #data #streaming</p>
<h1>Bibliography</h1>
<p>C. Huyen, “Introduction to streaming for data scientists,” Aug. 03, 2022. https://huyenchip.com//2022/08/03/stream-processing-for-data-scientists.html &#40;accessed Sep. 02, 2022&#41;.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Motivation</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_motivation">Reading Motivation</h3>
<p>Streaming is an immensely important concept I have consistently found. I came to appreciate the concept more deeply by interacting with <a href="https://juliaio.github.io/TranscodingStreams.jl/stable/">TranscodingStreams.jl</a> to parse terabytes worth of data out of memory in a JSON format &#40;shudders at the thought of this&#41;.</p>
<p>Once your data is stored in files, data lakes, or data warehouses, it becomes historical data.</p>
<p>Streaming data refers to data that is still flowing through a system, e.g. moving from one microservice to another.</p>
<p>Historical data is often processed in batch jobs — jobs that are kicked off periodically. For example, once a day, you might want to kick off a batch job to generate recommendations for all users. When data is processed in batch jobs, we refer to it as batch processing.</p>
<p>Stream processing refers to doing computation on streaming data.</p>
<p>Batch prediction means periodically generating predictions offline, before prediction requests arise.</p>
<p>Online prediction means generating predictions on-demand, after prediction requests arise.</p>
<p>One of the features you might use is the average price of all the items this user has looked at in the last 30 minutes. This is an online feature – it needs to be computed on online data &#40;as opposed to being pre-computed on historical data&#41;</p>
<p>This “easy” way is stateless, which means that each computation is independent from the previous one.</p>
<p>Stateful stream processing can avoid redundancy, hence faster and cheaper.</p>
<p>Batch monitoring means running a script to compute the metrics you care about periodically &#40;like once a day&#41;, usually on data in warehouses like S3, BigQuery, Snowflake, etc. Batch monitoring is slow. You first have to wait for data to arrive at warehouses, then wait for the script to run.</p>
<p>Real-time monitoring means computing metrics on data as it arrives, allowing you to get insights into your systems in &#40;near&#41; real-time.</p>
<p>Continual learning refers to the ability to update your models whenever needed and to deploy this update quickly.</p>
<p>Overtime, we’ll have a series of ordered updates, which is called a log. Each update is an example of an event. Logs are append-only. You can only append the new events to your existing log. You can’t overwrite previous events.</p>
<p>There are two components of a streaming system: the realtime transport and the computation engine. The real-time transport, which are basically distributed logs.</p>
<p>The computation engine performs computation &#40;e.g. joining, aggregation, filtering, etc.&#41; on the data being transported.</p>
<p>The total price and the count constitute the internal state of the stream processing job.</p>
<p>The saved internal state is called a checkpoint &#40;or savepoint&#41;, and this job can resume from any checkpoint.</p>
<p>The computed average price value, if saved, will become a materialized view of the feature average price.</p>
<p>Or you can update it using only the new information &#40;e.g. using the latest materialized average price &#43; the prices of updated items&#41;. The latter is called incremental materialized.</p>
<p>Point-in-time correctness refers to a system’s ability to accurately perform a computation as it would’ve happened at any time in the past. Point-in-time correctness means no data leakage.</p>
<p>Retroactively processing historical data using a different logic is also called backfilling.</p>
<p>With batch backfilling, you can apply the new logic &#40;e.g. new feature definition&#41; to a table in the past.</p>
<p>With stream backfilling, you can apply the new logic to the log in a given period of time in the past, e.g. apply it to the log on June 10, 2022.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Introduction To Streaming for Data Scientists</em>. <a href="https://jacobzelko.com/09092022205654-streaming-data-scientists">https://jacobzelko.com/09092022205654-streaming-data-scientists</a>. September 9 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 09 Sep 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  COVID-19 and the other pandemic: populations made vulnerable by systemic inequity  ]]>
  </title>
  <link> https://jacobzelko.com/09082022132448-covid-systemic-inequity/index.html </link>
  <guid> https://jacobzelko.com/09082022132448-covid-systemic-inequity/index.html </guid>
  <description>
    <![CDATA[  How the COVID pandemic lead to highlighting vulnerable populations introduced by systemic inequity for healthcare  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>COVID-19 and the other pandemic: populations made vulnerable by systemic inequity</h1>
<p><strong>Date:</strong> September 8 2022</p>
<p><strong>Summary:</strong> How the COVID pandemic lead to highlighting vulnerable populations introduced by systemic inequity for healthcare</p>
<p><strong>Keywords:</strong> ##bibliography #inequity #minorities #covid19 #pandemic #vulnerable  #archive</p>
<h1>Bibliography</h1>
<p>D. M. Gray, A. Anyane-Yeboa, S. Balzora, R. B. Issaka, and F. P. May, &quot;COVID-19 and the other pandemic: populations made vulnerable by systemic inequity,&quot; Nat Rev Gastroenterol Hepatol, vol. 17, no. 9, pp. 520–522, Sep. 2020, doi: 10.1038/s41575-020-0330-8.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Motivation</li><li>Vulnerable Population Examples</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_motivation">Reading Motivation</h3>
<p>I examined this paper to learn more about vulnerabilities posed to minority and vulnerable populations. I focused less on pandemic-related risks and more on examples of problems posed to minority populations.</p>
<h3 id="vulnerable_population_examples">Vulnerable Population Examples</h3>
<p>Intersectional vulnerable populations &#40;e.g. those living with disability, poverty conditions, or racial minority, etc.&#41; face even more perils to their already vulnerable state.</p>
<ul>
<li><p>African Americans have the highest mortality from colorectal cancer. &#40;3, 4&#41;</p>
</li>
</ul>
<pre><code class="language-julia">- Diagnosed at younger ages 
- Intersectionally, African Americans who are poor, uninsured, and/or geographically isolated are less likely to get screening tests 
	- Less likely to receive treatment for advanced disease</code></pre>
<ul>
<li><p>Hispanics or Latinos are disproportionately affected by SDOH factors. &#40;5&#41;</p>
</li>
</ul>
<pre><code class="language-julia">- Have highest incidence of nonalcoholic fatty liver disease</code></pre>
<ul>
<li><p>Native American reservations lack low number of ICU hospital beds. &#40;8&#41;</p>
</li>
</ul>
<pre><code class="language-julia">- Indian Health Services only had limited ability to help COVID-19 patients.</code></pre>
<ul>
<li><p>Minorities are over-represented as and in: &#40;9&#41;</p>
</li>
</ul>
<pre><code class="language-julia">- Essential workers 
- Poor and overcrowded housing
- Could be impossible to adhere to COVID-19 safety policies</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>COVID-19 and the other pandemic: populations made vulnerable by systemic inequity</em>. <a href="https://jacobzelko.com/09082022132448-covid-systemic-inequity">https://jacobzelko.com/09082022132448-covid-systemic-inequity</a>. September 8 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Thu, 08 Sep 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  Spatial exploration of the CDC&#39;s Social Vulnerability Index and heat-related health outcomes in Georgia  ]]>
  </title>
  <link> https://jacobzelko.com/09082022132106-spatial-vulnerability-outcomes/index.html </link>
  <guid> https://jacobzelko.com/09082022132106-spatial-vulnerability-outcomes/index.html </guid>
  <description>
    <![CDATA[  A small article on how the CDC&#39;s social vulnerability index was associated with heat-related morbidities in Georgia  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Spatial exploration of the CDC&#39;s Social Vulnerability Index and heat-related health outcomes in Georgia</h1>
<p><strong>Date:</strong> September 8 2022</p>
<p><strong>Summary:</strong> A small article on how the CDC&#39;s social vulnerability index was associated with heat-related morbidities in Georgia</p>
<p><strong>Keywords:</strong> ##bibliography #cdc #social #vulnerability #index #georgia #death #health  #archive</p>
<h1>Bibliography</h1>
<p>E. A. Lehnert, &quot;Spatial exploration of the CDC’s Social Vulnerability Index and heat-related health outcomes in Georgia,&quot; International Journal of Disaster Risk Reduction, p. 7, 2020.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Motivation</li><li>Definitions</li><li>Social Vulnerability Index Calculations</li><li>Digression on Black Belt</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_motivation">Reading Motivation</h3>
<p>I read this paper to find out more about the social vulnerability index and how it can be used in the state of Georgia. It wasn&#39;t particularly insightful although the discussion about calculating SVI for GA and its definition about social vulnerability was helpful.</p>
<h3 id="definitions">Definitions</h3>
<p>Social vulnerability is defined as the extent to which a community contains social characteristics that may affect the community&#39;s overall resilience &#40;18&#41;. It is affected by 	- Situational factors: Employment, Education, Income, Housing Type &#40;19, 20&#41; 	- Intrinsic factors: Age, Race, and Ethnicity &#40;19, 21&#41;</p>
<h3 id="social_vulnerability_index_calculations">Social Vulnerability Index Calculations</h3>
<p><a href="https://jacobzelko.com/09082022144933-social-vulnerability-index">See Note for Details</a></p>
<h3 id="digression_on_black_belt">Digression on Black Belt</h3>
<p>I never knew the term for this but historically, where African Americans were heavily enslaved is called the &quot;Black Belt&quot;. The authors found that high SVI and heat-related deaths were often found in these historical communities &#91;32&#93;.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Spatial exploration of the CDC&#39;s Social Vulnerability Index and heat-related health outcomes in Georgia</em>. <a href="https://jacobzelko.com/09082022132106-spatial-vulnerability-outcomes">https://jacobzelko.com/09082022132106-spatial-vulnerability-outcomes</a>. September 8 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Thu, 08 Sep 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  LGBTQ Populations: Psychologically Vulnerable Communities in the COVID-19 Pandemic  ]]>
  </title>
  <link> https://jacobzelko.com/09082022132720-lgbtq-psychologically-vulnerable/index.html </link>
  <guid> https://jacobzelko.com/09082022132720-lgbtq-psychologically-vulnerable/index.html </guid>
  <description>
    <![CDATA[  A brief report on the risks encountered by LGBTQ communities as a result of the COVID-19 pandemic  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>LGBTQ Populations: Psychologically Vulnerable Communities in the COVID-19 Pandemic</h1>
<p><strong>Date:</strong> September 8 2022</p>
<p><strong>Summary:</strong> A brief report on the risks encountered by LGBTQ communities as a result of the COVID-19 pandemic</p>
<p><strong>Keywords:</strong> ##bibliography #lgbtq #pandemic #covid19 #mental #health #vulnerable  #archive</p>
<h1>Bibliography</h1>
<p>J. P. Salerno, N. D. Williams, and K. A. Gattamorta, &quot;LGBTQ Populations: Psychologically Vulnerable Communities in the COVID-19 Pandemic,&quot; p. 4.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Motivation</li><li>LGBTQ Risks</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_motivation">Reading Motivation</h3>
<p>I examined this paper at the time to find out more about vulnerabilities posed to LGBTQ populations. I was less interested in the pandemic&#39;s potential impacts on these populations although this paper did have many thoughts on the topic.</p>
<h3 id="lgbtq_risks">LGBTQ Risks</h3>
<p>The LGBTQ community faces significant mental health disparities compared to heterosexual, cisgender populations &#40;Plöderl &amp; Tremblay, 2015; Price-Feeney, Green, &amp; Dorison, 2020; Russell &amp; Fish, 2016&#41;</p>
<p>People of color within the LGBTQ community are at greater risk for social inequality &#40;Baams, Wilson, &amp; Russell, 2019; Conron &amp; Wilson, 2019; Movement Advancement Project &amp; SAGE, 2017; Morton et al., 2018; Whittington et al., 2020&#41;.</p>
<p>Intersectional LGBTQ youth populations &#40;e.g. stratified by race, ethnicity, immigration status, poverty conditions, etc.&#41; generally engage more often with school mental health services &#40;Ali et al., 2019; Golberstein, Wen, &amp; Miller, 2020&#41;.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>LGBTQ Populations: Psychologically Vulnerable Communities in the COVID-19 Pandemic</em>. <a href="https://jacobzelko.com/09082022132720-lgbtq-psychologically-vulnerable">https://jacobzelko.com/09082022132720-lgbtq-psychologically-vulnerable</a>. September 8 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Thu, 08 Sep 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Social Vulnerability Index  ]]>
  </title>
  <link> https://jacobzelko.com/09082022144933-social-vulnerability-index/index.html </link>
  <guid> https://jacobzelko.com/09082022144933-social-vulnerability-index/index.html </guid>
  <description>
    <![CDATA[  An overview of the metric, Social Vulnerability Index, created by the Centers for Disease Control  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Social Vulnerability Index</h1>
<p><strong>Date:</strong> September 8 2022</p>
<p><strong>Summary:</strong> An overview of the metric, Social Vulnerability Index, created by the Centers for Disease Control</p>
<p><strong>Keywords:</strong> ##summary #metric #social #vulnerability #index #svi #cdc  #archive</p>
<h1>Bibliography</h1>
<p>B. E. Flanagan, E. W. Gregory, E. J. Hallisey, J. L. Heitgerd, and B. Lewis, &quot;A social vulnerability index for disaster management,&quot; Journal of homeland security and emergency management, vol. 8, no. 1, 2011.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>SVI data can be retrieved from: https://www.atsdr.cdc.gov/placeandhealth/svi/index.html</p>
<p>For at least the 2000 version of SVI, the metric is derived from summed percentile rankings at census tract level of fifteen U.S. Census variables shown in the following table: </p>
<table><tr><th align="left">SVI Theme</th><th align="left">Variables Included</th></tr><tr><td align="left">1. Socioeconomic Status</td><td align="left">&#37; Below Poverty Level</td></tr><tr><td align="left"></td><td align="left">&#37; Unemployed</td></tr><tr><td align="left"></td><td align="left">Per Capita Income</td></tr><tr><td align="left"></td><td align="left">&#37; Age 25 or Older with No High School</td></tr><tr><td align="left">2. Household Composition &amp;</td><td align="left">Diploma</td></tr><tr><td align="left">Disability</td><td align="left">&#37; Age 65 or Older</td></tr><tr><td align="left"></td><td align="left">&#37; Age 17 or Younger</td></tr><tr><td align="left">3. Minority Status &amp; Language</td><td align="left">&#37; Single Parent Household</td></tr><tr><td align="left"></td><td align="left">&#37; Age 5 or Older Speak English &quot;Less than</td></tr><tr><td align="left">4. Housing &amp; Transportation</td><td align="left">Well&quot;</td></tr><tr><td align="left"></td><td align="left">&#37; Multi-Unit Structures</td></tr><tr><td align="left"></td><td align="left">&#37; Mobile Homes</td></tr><tr><td align="left"></td><td align="left">&#37; Crowding &#40;More people than rooms&#41;</td></tr><tr><td align="left"></td><td align="left">&#37; Households without a Vehicle</td></tr><tr><td align="left"></td><td align="left">&#37; In Institutionalized Group Quarters</td></tr></table>
<p>These variables were determined from an extensive literature review &#91;19,20,23,29, 30&#93;. &lt;&#33;–TODO: Get references from <a href="https://jacobzelko.com/09082022132106-spatial-vulnerability-outcomes">this file</a>–&gt; The SVI is normalized between 0 and 1 with 0 representing low social vulnerability and 1 representing high social vulnerability.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Social Vulnerability Index</em>. <a href="https://jacobzelko.com/09082022144933-social-vulnerability-index">https://jacobzelko.com/09082022144933-social-vulnerability-index</a>. September 8 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Thu, 08 Sep 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  A Systematic Review of the Health of Vulnerable Populations within US Rural Societies  ]]>
  </title>
  <link> https://jacobzelko.com/09082022131551-systematic-rural-review/index.html </link>
  <guid> https://jacobzelko.com/09082022131551-systematic-rural-review/index.html </guid>
  <description>
    <![CDATA[  An overview and summary of vulnerable populations that are particular to rural US  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>A Systematic Review of the Health of Vulnerable Populations within US Rural Societies</h1>
<p><strong>Date:</strong> September 8 2022</p>
<p><strong>Summary:</strong> An overview and summary of vulnerable populations that are particular to rural US</p>
<p><strong>Keywords:</strong> ##bibliography #review #vulnerable #populations #rural #us  #archive</p>
<h1>Bibliography</h1>
<p>K. M. Gonzalez, &quot;A Systematic Review of the Health of Vulnerable Populations within US Rural Societies,&quot; OJRNHC, vol. 18, no. 1, pp. 112–147, 2018, doi: 10.14574/ojrnhc.v18i1.507.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Movation</li><li>What Is Vulnerability?</li><li>Barriers Often Encountered in Rural Healthcare Settings</li><li>Vulnerabilities Most Often Studied in Rural Health Literature</li><li>Recommendations for Future Research</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_movation">Reading Movation</h3>
<p>I wanted to read this paper to get more a sense for vulnerable populations. Although I was less interested in the specific applications to rural communities, I found the discussion around rural vulnerabilities very interesting as well as clarification around definitions.</p>
<h3 id="what_is_vulnerability">What Is Vulnerability?</h3>
<p>Vulnerable populations are those subgroups that are at risk for experiencing elevated healthcare disparities. &#40;De Chesnay &amp; Anderson, 2016; Shi &amp; Stevens, 2010&#41;.</p>
<p>A potential model to assess vulnerability is that proposed by &#40;Grabovschi et al., 2013&#41; where it can be visaulized as a right triangle with the horizontal axis representing healthcare accessibility and quality; vertical axis represents healthcare needs; hypotenuse is the level of vulnerability.</p>
<h3 id="barriers_often_encountered_in_rural_healthcare_settings">Barriers Often Encountered in Rural Healthcare Settings</h3>
<p>Health disparities continue to be a severe problem across US populations. &#40;Crosby, Wendel, Vanderpool, &amp; Casey, 2012; Penman-Aguilar et al., 2016&#41; Trends in inequalities emerge for patients seeking healthcare across multiple factors such as race, socioeconomic status, and provider accessibility.</p>
<ul>
<li><p>Rural dwellers tend to lack insurance compared to urban settings &#40;Barker, Londeree, McBride, Kemper, &amp; Mueller, 2013; Soni, Hendryx, &amp; Simon, 2017&#41;</p>
</li>
<li><p>Many rural dwellers travel more than 30 minutes for healthcare - it is especially exacerbated where public transportation is lacking and severe poverty exists &#40;Warren &amp; Smalley, 2014, p. xiii&#41;</p>
</li>
</ul>
<h3 id="vulnerabilities_most_often_studied_in_rural_health_literature">Vulnerabilities Most Often Studied in Rural Health Literature</h3>
<p>46 articles were studied for this systematic review. Population sizes ranged from 10 to 30,874 people. For quantitative studies, populations ranged from 28 to 30,874 participants.</p>
<table><tr><th align="left">Aspects of Vulnerability Considered</th><th align="left">Included papers, n &#40;&#37;&#41;</th></tr><tr><td align="left">Low socioeconomic status</td><td align="left">22&#40;47.8&#37;&#41;</td></tr><tr><td align="left">Racial/Ethnic Minority</td><td align="left">18&#40;39.1&#37;&#41;</td></tr><tr><td align="left">Chronic physical or mental illness</td><td align="left">11&#40;23.9&#37;&#41;</td></tr><tr><td align="left">Low level of education</td><td align="left">11&#40;23.9&#37;&#41;</td></tr><tr><td align="left">Old age</td><td align="left">8&#40;17.4&#37;&#41;</td></tr><tr><td align="left">Youth</td><td align="left">8&#40;17.4&#37;&#41;</td></tr><tr><td align="left">Residence in medically underserved area</td><td align="left">6&#40;13.0&#37;&#41;</td></tr><tr><td align="left">Disability</td><td align="left">5&#40;10.9&#37;&#41;</td></tr><tr><td align="left">Pregnancy</td><td align="left">4&#40;8.7&#37;&#41;</td></tr><tr><td align="left">Smoking</td><td align="left">3&#40;6.5&#37;&#41;</td></tr><tr><td align="left">Substance Abuse</td><td align="left">3&#40;6.5&#37;&#41;</td></tr></table>
<h3 id="recommendations_for_future_research">Recommendations for Future Research</h3>
<p>Only one article calculated a power analysis &#40;Komro et al., 2015&#41;.</p>
<p>Power analysis are used in quantitative research to limit error between hypothesis and findings.</p>
<p>There was observed an overrelianceon descriptive correlational designs that impeded adequate theory testing. Studies should incorporate theories and theoretical applications relevant to rural populations.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>A Systematic Review of the Health of Vulnerable Populations within US Rural Societies</em>. <a href="https://jacobzelko.com/09082022131551-systematic-rural-review">https://jacobzelko.com/09082022131551-systematic-rural-review</a>. September 8 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Thu, 08 Sep 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Setting Up Julia LSP for Neovim  ]]>
  </title>
  <link> https://jacobzelko.com/08312022162228-julia-lsp-setup/index.html </link>
  <guid> https://jacobzelko.com/08312022162228-julia-lsp-setup/index.html </guid>
  <description>
    <![CDATA[  An explanation of how to setup the Julia LSP for Neovim  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Setting Up Julia LSP for Neovim</h1>
<p><strong>Date:</strong> August 31 2022</p>
<p><strong>Summary:</strong> An explanation of how to setup the Julia LSP for Neovim</p>
<p><strong>Keywords:</strong> ##summary #neovim #julia #programming #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>General Guide</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="general_guide">General Guide</h3>
<p>This is from Fredrik Ekre at the <a href="https://discourse.julialang.org/t/neovim-languageserver-jl/37286/72?u&#61;thecedarprince">Julia Discourse</a> with some minimal changes and notes from me:</p>
<p>LanguageServer is somewhat slow to start so it is very useful to use a custom sysimage using PackageCompiler to reduce this time. On my machine I get the first response after 20&#43; seconds, but with a custom sysimage I can execute LS commands instantaneously.</p>
<p>Here is my setup:</p>
<ol>
<li><p>Install <code>Mason.nvim</code> or <code>nvim-lspconfig</code> and install <code>julials</code> &#40;it may also be called something like Julia Language Server Protocol&#41;.</p>
</li>
<li><p>Modify <code>init.vim</code> or <code>init.lua</code> to use a custom Julia executable &#40;if it exists&#41;:</p>
</li>
</ol>
<pre><code class="language-lua">require&#39;lspconfig&#39;.julials.setup&#123;
    on_new_config &#61; function&#40;new_config, _&#41;
        local julia &#61; vim.fn.expand&#40;&quot;~/.julia/environments/nvim-lspconfig/bin/julia&quot;&#41;
        if require&#39;lspconfig&#39;.util.path.is_file&#40;julia&#41; then
	    vim.notify&#40;&quot;Hello&#33;&quot;&#41;
            new_config.cmd&#91;1&#93; &#61; julia
        end
    end
&#125;</code></pre>
<p>&#40;OPTIONAL&#41; If you use Packer to manage your vim setup, run <code>PackerCompile</code>.</p>
<p>NOTE: If you notice, there is a small line named <code>vim.notify&#40;&quot;Hello&#33;&quot;&#41;</code>. This is to test that <code>julials</code> is engaged when accessing a Julia file - you can check that it is engaged by writing <code>:messages</code> in vim. You should see &quot;Hello&#33;&quot; appear. This line can then safely be removed. </p>
<ol start="3">
<li><p>Create the <code>nvim-lspconfig</code> Julia environment by running the following in your shell:</p>
</li>
</ol>
<pre><code class="language-sh">julia --project&#61;~/.julia/environments/nvim-lspconfig -e &#39;using Pkg; Pkg.add&#40;&quot;LanguageServer&quot;&#41;&#39;</code></pre>
<p>And then navigate to the directory at <code>~.julia/environment/nvim-lspconfig</code>.</p>
<ol start="3">
<li><p>Copy the following makefile &#40;<a href="https://github.com/fredrikekre/.dotfiles/blob/master/.julia/environments/nvim-lspconfig/Makefile">courtesy of Fredrik Ekre</a>&#41; the <code>nvim-lspconfig</code> directory with the name <code>makefile</code>:</p>
</li>
</ol>
<pre><code class="language-make"># MIT License. Copyright &#40;c&#41; 2021 Fredrik Ekre
#
# This Makefile can be used to build a custom Julia system image for LanguageServer.jl to
# use with neovims built in LSP support. An up-to date version of this Makefile can be found
# at https://github.com/fredrikekre/.dotfiles/blob/master/.julia/environments/nvim-lspconfig/Makefile
#
# Usage instructions:
#
#   1. Update the neovim configuration to use a custom julia executable. If you use
#      nvim-lspconfig &#40;recommended&#41; you can modify the setup call to the following:
#
#          require&#40;&quot;lspconfig&quot;&#41;.julials.setup&#40;&#123;
#              on_new_config &#61; function&#40;new_config, _&#41;
#                  local julia &#61; vim.fn.expand&#40;&quot;~/.julia/environments/nvim-lspconfig/bin/julia&quot;&#41;
#                  if require&#40;&quot;lspconfig&quot;&#41;.util.path.is_file&#40;julia&#41; then
#                      new_config.cmd&#91;1&#93; &#61; julia
#                  end
#              end,
#              -- ...
#          &#125;&#41;
#
#   2. Place this Makefile in ~/.julia/environments/nvim-lspconfig &#40;create the directory if
#      it doesn&#39;t already exist&#41;.
#
#   3. Change directory to ~/.julia/environments/nvim-lspconfig and run &#96;make&#96;. This will
#      start up neovim in a custom project with a julia process that recods compiler
#      statements. Follow the instructions in the opened source file, and then exit neovim.
#
#   4. Upon exiting neovim PackageCompiler.jl will compile a custom system image which will
#      automatically be used whenever you work on Julia projects in neovim.
#
# Update instructions:
#
#  To update the system image &#40;e.g. when upgrading Julia or upgrading LanguageServer.jl or
#  it&#39;s dependencies&#41; run the following commands from the
#  ~/.julia/environments/nvim-lspconfig directory:
#
#      julia --project&#61;. -e &#39;using Pkg; Pkg.update&#40;&#41;&#39;
#      makeJULIA&#61;&#36;&#40;shell which julia&#41;
JULIA_PROJECT&#61;
SRCDIR:&#61;&#36;&#40;shell dirname &#36;&#40;abspath &#36;&#40;firstword &#36;&#40;MAKEFILE_LIST&#41;&#41;&#41;&#41;
ifeq &#40;&#36;&#40;shell uname -s&#41;,Linux&#41;
	SYSIMAGE&#61;languageserver.so
else
	SYSIMAGE&#61;languageserver.dylib
endifdefault: &#36;&#40;SYSIMAGE&#41;&#36;&#40;SYSIMAGE&#41;: Manifest.toml packagecompiler/Manifest.toml packagecompiler/precompile_statements.jl
	JULIA_LOAD_PATH&#61;&#36;&#123;PWD&#125;:&#36;&#123;PWD&#125;/packagecompiler:@stdlib &#36;&#123;JULIA&#125; -e &#39;using PackageCompiler; PackageCompiler.create_sysimage&#40;:LanguageServer, sysimage_path&#61;&quot;&#36;&#40;SYSIMAGE&#41;&quot;, precompile_statements_file&#61;&quot;packagecompiler/precompile_statements.jl&quot;&#41;&#39;Manifest.toml: Project.toml
	JULIA_LOAD_PATH&#61;&#36;&#123;PWD&#125;/Project.toml:@stdlib &#36;&#123;JULIA&#125; -e &#39;using Pkg; Pkg.instantiate&#40;&#41;&#39;Project.toml:
	JULIA_LOAD_PATH&#61;&#36;&#123;PWD&#125;/Project.toml:@stdlib &#36;&#123;JULIA&#125; -e &#39;using Pkg; Pkg.add&#40;&quot;LanguageServer&quot;&#41;&#39;packagecompiler/Manifest.toml: packagecompiler/Project.toml
	JULIA_LOAD_PATH&#61;&#36;&#123;PWD&#125;/packagecompiler/Project.toml:@stdlib &#36;&#123;JULIA&#125; -e &#39;using Pkg; Pkg.instantiate&#40;&#41;&#39;packagecompiler/Project.toml:
	mkdir -p packagecompiler
	JULIA_LOAD_PATH&#61;&#36;&#123;PWD&#125;/packagecompiler/Project.toml:@stdlib &#36;&#123;JULIA&#125; -e &#39;using Pkg; Pkg.add&#40;&quot;PackageCompiler&quot;&#41;&#39;packagecompiler/precompile_statements.jl: Manifest.toml bin/julia
	TMPDIR&#61;&#36;&#40;shell mktemp -d&#41; &amp;&amp; \
	cd &#36;&#36;&#123;TMPDIR&#125; &amp;&amp; \
	JULIA_LOAD_PATH&#61;: &#36;&#123;JULIA&#125; -e &#39;using Pkg; Pkg.generate&#40;&quot;Example&quot;&#41;&#39; 2&gt; /dev/null &amp;&amp; \
	cd Example &amp;&amp; \
	JULIA_LOAD_PATH&#61;&#36;&#36;&#123;PWD&#125;:@stdlib &#36;&#123;JULIA&#125; -e &#39;using Pkg; Pkg.add&#40;&#91;&quot;JSON&quot;, &quot;fzf_jll&quot;, &quot;Random&quot;, &quot;Zlib_jll&quot;&#93;&#41;&#39; 2&gt; /dev/null &amp;&amp; \
	JULIA_LOAD_PATH&#61;&#36;&#36;&#123;PWD&#125;:@stdlib &#36;&#123;JULIA&#125; -e &#39;using Pkg; Pkg.precompile&#40;&#41;&#39; 2&gt; /dev/null &amp;&amp; \
	echo &quot;&#36;&#36;PACKAGE_CONTENT&quot; &gt; src/Example.jl &amp;&amp; \
	JULIA_TRACE_COMPILE&#61;1 nvim src/Example.jl &amp;&amp; \ # NOTE: You may need to check that neovim is correctly on your path
	rm -rf &#36;&#36;&#123;TMPDIR&#125;bin/julia:
	mkdir -p bin
	echo &quot;&#36;&#36;JULIA_SHIM&quot; &gt; &#36;@
	chmod &#43;x &#36;@clean:
	rm -rf &#36;&#40;SYSIMAGE&#41; packagecompiler bin.PHONY: clean defaultexport JULIA_SHIM
define JULIA_SHIM
#&#33;/bin/bash
JULIA&#61;&#36;&#123;JULIA&#125;
if &#91;&#91; &#36;&#36;&#123;JULIA_TRACE_COMPILE&#125; &#61; &quot;1&quot; &#93;&#93;; then
    exec &#36;&#36;&#123;JULIA&#125; --trace-compile&#61;&#36;&#123;PWD&#125;/packagecompiler/precompile_statements.jl &quot;&#36;&#36;@&quot;
elif &#91;&#91; -f &#36;&#123;PWD&#125;/&#36;&#40;SYSIMAGE&#41; &#93;&#93;; then
    exec &#36;&#36;&#123;JULIA&#125; --sysimage&#61;&#36;&#123;PWD&#125;/&#36;&#40;SYSIMAGE&#41; &quot;&#36;&#36;@&quot;
else
    exec &#36;&#36;&#123;JULIA&#125; &quot;&#36;&#36;@&quot;
fi
endefexport PACKAGE_CONTENT
define PACKAGE_CONTENT
# This file is opened in neovim with a LanguageServer.jl process that records Julia
# compilation statements for creating a custom sysimage.
#
# This file has a bunch of linter errors which will exercise the linter and record
# statements for that. When the diagnostic messages corresponding to those errors show up in
# the buffer the language server should be ready to accept other commands &#40;note: this may
# take a while -- be patient&#41;. Here are some suggestions for various LSP functionality that
# can be exercised &#40;your regular keybindings should work&#41;:
#
#  - :lua vim.lsp.buf.hover&#40;&#41;
#  - :lua vim.lsp.buf.definition&#40;&#41;
#  - :lua vim.lsp.buf.references&#40;&#41;
#  - :lua vim.lsp.buf.rename&#40;&#41;
#  - :lua vim.lsp.buf.formatting&#40;&#41;
#  - :lua vim.lsp.buf.formatting_sync&#40;&#41;
#  - :lua vim.lsp.buf.code_action&#40;&#41;
#  - Tab completion &#40;if you have set this up using LSP&#41;
#  - ...
#
# When you are finished, simply exit neovim and PackageCompiler.jl will use all the recorded
# statements to create a custom sysimage. This sysimage will be used for the language server
# process in the future, and should result in almost instant response.module Exampleimport JSON
import fzf_jll
using Random
using Zlib_jllfunction hello&#40;who, notused&#41;
    println&#40;&quot;hello&quot;, who&#41;
    shuffle&#40;&#91;1, 2, 3&#93;&#41;
   shoffle&#40;&#91;1, 2, 3&#93;&#41;
    fzzf &#61; fzf_jll.fzzf&#40;&#41;
    fzf &#61; fzf_jll.fzf&#40;1&#41;
    JSON.print&#40;stdout, Dict&#40;&quot;hello&quot; &#61;&gt; &#91;1, 2, 3&#93;&#41;, 2, 123&#41;
    JSON.print&#40;stdout, Dict&#40;&quot;hello&quot; &#61;&gt; &#91;1, 2, 3&#93;&#41;&#41;
    hi&#40;who&#41;
    return Zlib_jll.libz
endfunction world&#40;s&#41;
    if s &#61;&#61; nothing
      hello&#40;s&#41;
  else
      hello&#40;s&#41;
  end
    x &#61; &#91;1, 2, 3&#93;
    for i in 1:length&#40;x&#41;
        println&#40;x&#91;i&#93;&#41;
    end
endend # module
endef</code></pre>
<ol start="4">
<li><p>Run <code>make</code>. This will set up a dummy project and launch nvim with julia recording everything that is compiled. Wait until the LanguageServer responds &#40;there are a bunch of things in this dummy project that will result in warnings&#41; and then run some LanguageServer commands, for example <code>::lua vim.lsp.buf.hover&#40;&#41;</code> to fetch documentation&#41;.</p>
</li>
<li><p>Quit vim.</p>
</li>
<li><p>PackageCompiler will now build a custom <code>languageserver.so</code> sysimage.</p>
</li>
<li><p>Enjoy the Julia LSP&#33;</p>
</li>
</ol>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Setting Up Julia LSP for Neovim</em>. <a href="https://jacobzelko.com/08312022162228-julia-lsp-setup">https://jacobzelko.com/08312022162228-julia-lsp-setup</a>. August 31 2022.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Wed, 31 Aug 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Definitions Concerning Terrorism  ]]>
  </title>
  <link> https://jacobzelko.com/08282022133230-definitions-around-terrorism/index.html </link>
  <guid> https://jacobzelko.com/08282022133230-definitions-around-terrorism/index.html </guid>
  <description>
    <![CDATA[  A summary note focused on definitions concerning terrorism and  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Definitions Concerning Terrorism</h1>
<p><strong>Date:</strong> August 28 2022</p>
<p><strong>Summary:</strong> A summary note focused on definitions concerning terrorism and</p>
<p><strong>Keywords:</strong> ##summary #definition #terrorism #radicalization #fear #violence #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>What Is Terrorism?</li><li>Goals of Terrorism</li><li>What Is Violent Radicalization</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="what_is_terrorism">What Is Terrorism?</h3>
<p>Terrorism is defined as the use of violence and intimidation in the pursuit of political aims. Terrorism is not an individual experience; it is violence at a population level and worthy of attention in fields focusing on socioecological understanding of social processes and human behavior <a href="https://jacobzelko.com/08192022115354-health-terrorism-factors">Social Determinants of Health, Violent Radicalization, and Terrorism: A Public Health Perspective</a>. Often the threat of violence – is enough to accomplish an objective &#40;this holds true often for terrorist groups as well&#41;.</p>
<h3 id="goals_of_terrorism">Goals of Terrorism</h3>
<p>Instill a population level of:</p>
<ul>
<li><p>Fear</p>
</li>
<li><p>Uncertainty</p>
</li>
<li><p>Vulnerability</p>
</li>
</ul>
<p>As well as:</p>
<ul>
<li><p>Undermine health and well-being of populations</p>
</li>
<li><p>Not preventing avoidable morbidity and mortality - Yehuda R, Hyman SE. The impact of terrorism on brain, and behavior: what we know and what we need to know. Neuropsychopharmacology. 2005;30:1773–1780.</p>
</li>
</ul>
<h3 id="what_is_violent_radicalization">What Is Violent Radicalization</h3>
<p>Violent radicalization the process of adopting or promoting an ideologically based violence to advance political, religious, or social change via an extremist belief system <a href="https://jacobzelko.com/08192022115354-health-terrorism-factors">Social Determinants of Health, Violent Radicalization, and Terrorism: A Public Health Perspective</a>.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Definitions Concerning Terrorism</em>. <a href="https://jacobzelko.com/08282022133230-definitions-around-terrorism">https://jacobzelko.com/08282022133230-definitions-around-terrorism</a>. August 28 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 28 Aug 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Social Determinants Surrounding Terrorism  ]]>
  </title>
  <link> https://jacobzelko.com/08282022134930-social-determinants-terrorism/index.html </link>
  <guid> https://jacobzelko.com/08282022134930-social-determinants-terrorism/index.html </guid>
  <description>
    <![CDATA[  Working note on the social determinants of terrorist activity in a vein inspired by the notion of social determinants of health  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Social Determinants Surrounding Terrorism</h1>
<p><strong>Date:</strong> August 28 2022</p>
<p><strong>Summary:</strong> Working note on the social determinants of terrorist activity in a vein inspired by the notion of social determinants of health</p>
<p><strong>Keywords:</strong> #social #determinants #terrorism #health #violence #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Definitions</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="definitions">Definitions</h3>
<p>Social cohesion is the connectedness and solidarity in populations. This includes the absence of social conflict and presence of social bonds.27 A measure used to quantify social cohesion is trust. <a href="https://jacobzelko.com/08192022115354-health-terrorism-factors">Social Determinants of Health, Violent Radicalization, and Terrorism: A Public Health Perspective</a></p>
<p>Social capital are the features of social structures that are resources for community members to create action.27 Social capital acts as a safety net for individuals to protect against losses like physical health, mental health, and life satisfaction.31<a href="https://jacobzelko.com/08192022115354-health-terrorism-factors">Social Determinants of Health, Violent Radicalization, and Terrorism: A Public Health Perspective</a> &#40;See <a href="https://jacobzelko.com/08282022135955-social-capital">Features of Social Capital</a> for further insight on what social capital is and its importance&#41;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Social Determinants Surrounding Terrorism</em>. <a href="https://jacobzelko.com/08282022134930-social-determinants-terrorism">https://jacobzelko.com/08282022134930-social-determinants-terrorism</a>. August 28 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 28 Aug 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Overview of What Is Jihad  ]]>
  </title>
  <link> https://jacobzelko.com/08282022142544-jihad-definition/index.html </link>
  <guid> https://jacobzelko.com/08282022142544-jihad-definition/index.html </guid>
  <description>
    <![CDATA[  Short summary on what is jihad and its various understandings  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Overview of What Is Jihad</h1>
<p><strong>Date:</strong> August 28 2022</p>
<p><strong>Summary:</strong> Short summary on what is jihad and its various understandings</p>
<p><strong>Keywords:</strong> ##summary #jihad #islam #holy #struggle #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>Jihad is a major teaching in Islam and is often confused in modern discussion of contemporary Islam. It is often simplistically translated in English to mean, &quot;holy war&quot;. However, it has a much deeper meaning relating to the notion of struggling for the sake of God.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Overview of What Is Jihad</em>. <a href="https://jacobzelko.com/08282022142544-jihad-definition">https://jacobzelko.com/08282022142544-jihad-definition</a>. August 28 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Sun, 28 Aug 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Features of Social Capital  ]]>
  </title>
  <link> https://jacobzelko.com/08282022135955-social-capital/index.html </link>
  <guid> https://jacobzelko.com/08282022135955-social-capital/index.html </guid>
  <description>
    <![CDATA[  An overview on what social capital is and how it affects  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Features of Social Capital</h1>
<p><strong>Date:</strong> August 28 2022</p>
<p><strong>Summary:</strong> An overview on what social capital is and how it affects</p>
<p><strong>Keywords:</strong> ##summary #social #capital #risk #terrorism #violence #crime #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>Varying levels of social capital in a population is an important determinant of health in children, adolescents, adults, and aging populations.28,33 <a href="https://jacobzelko.com/08192022115354-health-terrorism-factors">Social Determinants of Health, Violent Radicalization, and Terrorism: A Public Health Perspective</a></p>
<p>Low levels of social capital, can be a risk factors for population health such as:</p>
<ol>
<li><p>Prevention of crime.33,35</p>
</li>
<li><p>High risk behaviors such as spread of suicidal ideation36 and alcohol and other drug use among adolescents.37</p>
</li>
</ol>
<p>Social capital brings people together in at least two ways:</p>
<ol>
<li><p>Bring alike people together to create bonding networks</p>
</li>
<li><p>Bring people not alike together to create bridging networks. 29,30</p>
</li>
</ol>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Features of Social Capital</em>. <a href="https://jacobzelko.com/08282022135955-social-capital">https://jacobzelko.com/08282022135955-social-capital</a>. August 28 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 28 Aug 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  The Origins Of Terrorism: Cross-country Estimates Of Socio-economic Determinants Of Terrorism  ]]>
  </title>
  <link> https://jacobzelko.com/08232022220628-origins-terrorism/index.html </link>
  <guid> https://jacobzelko.com/08232022220628-origins-terrorism/index.html </guid>
  <description>
    <![CDATA[  Brief summary of paper examining socioeconomic impacts or determinants of terroristic ideology  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>The Origins Of Terrorism: Cross-country Estimates Of Socio-economic Determinants Of Terrorism</h1>
<p><strong>Date:</strong> August 28 2022</p>
<p><strong>Summary:</strong> Brief summary of paper examining socioeconomic impacts or determinants of terroristic ideology</p>
<p><strong>Keywords:</strong> ##bibliography #terrorism #socioeconomics #determinants #archive</p>
<h1>Bibliography</h1>
<p>A. Freytag, J. J. Krüger, D. Meierrieks, and F. Schneider, &quot;The origins of terrorism: Cross-country estimates of socio-economic determinants of terrorism,&quot; European Journal of Political Economy, vol. 27, pp. S5–S16, Dec. 2011, doi: 10.1016/j.ejpoleco.2011.06.009.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>I personally only found this paper mildly interesting. In my research in terrorism, I was not as interested in this sort of research literature as it was too granular for what I was investigating – which was a broad level of investigation as an initial pass.</p>
<p>Their biggest takeaway from their study was that they found contrary to mainstream literature now, there is a socioeconomic impact to account for when researching terrorism. This especially extends the poor socioeconomic conditions individuals find themselves in such as insufficient welfare policies, economic discrimination, and low levels of economic openness. &#40;e.g., Burgoon, 2006; Blomberg and Hess, 2008; Krieger and Meierrieks, 2010; Caruso and Schneider, 2011&#41; Additionally, to fight terrorism, they surmised that improving socioeconomic conditions could in fact counter terrorist growth. </p>
<p>&lt;&#33;–TODO: Add citations–&gt;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>The Origins Of Terrorism: Cross-country Estimates Of Socio-economic Determinants Of Terrorism</em>. <a href="https://jacobzelko.com/08232022220628-origins-terrorism">https://jacobzelko.com/08232022220628-origins-terrorism</a>. August 28 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 28 Aug 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Why Do People Become Terrorists? A Prosecutor&#39;s Experiences  ]]>
  </title>
  <link> https://jacobzelko.com/08232022220130-people-become-terrorists/index.html </link>
  <guid> https://jacobzelko.com/08232022220130-people-become-terrorists/index.html </guid>
  <description>
    <![CDATA[  A autobiographical sketch on why a person might become a terrorist  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Why Do People Become Terrorists? A Prosecutor&#39;s Experiences</h1>
<p><strong>Date:</strong> August 23 2022</p>
<p><strong>Summary:</strong> A autobiographical sketch on why a person might become a terrorist</p>
<p><strong>Keywords:</strong> #archive #terrorist #motivation #violence</p>
<h1>Bibliography</h1>
<p>A. Spataro, &quot;Why Do People Become Terrorists?: A Prosecutor’s Experiences,&quot; Journal of International Criminal Justice, vol. 6, no. 3, pp. 507–524, Jul. 2008, doi: 10.1093/jicj/mqn033.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>Interesting comment in this paper about how convicted terrorists will harken back their cause to injustice suffered by those they perceive as having a special kinship with. Also, ideological motives do come up but the similarity piece appears more important than holding the same values.</p>
<p>Motivations for becoming a terrorist:</p>
<ol>
<li><p>Search for community belonging</p>
</li>
<li><p>Attempt to reaffirm identity</p>
</li>
<li><p>Search for prestige through &quot;strong&quot; leaders of communities 6</p>
</li>
</ol>
<p>A powerful quote from this paper is that, &quot;Modern Islamic terrorists are made, not born.&quot; There are routes from which would-be extremists come from:</p>
<ol>
<li><p>Could start that something is wrong and needs to be corrected</p>
</li>
<li><p>It is perceived that the problem cannot be solved with means provided by a society&#39;s political or legal framework</p>
</li>
<li><p>Accepting an ideology or developing a worldview that breaks down the barriers that stop most from committing acts of violence to be overcome.</p>
</li>
</ol>
<p>The moment when individuals &quot;can conceive of... acts of appalling brutality...&quot; &#40;Burke, supranote 2, at 247-248&#41;.</p>
<p>H. Shmuel Erlich, &#39;Reflections on the Terrorist Mind, in Varvin and Volkan, ibid., chap. 9, states how the psyche of a terrorist&#39;s mind &#39;is not marked by gross deviance&#39;, and &#39;the attempt to depict &quot;the Terrorist&quot; as a deranged, emotionally deprived and impoverished, mentally ill person is misleading and basically wrong&#39; &#40;at 148&#41;.</p>
<blockquote>
<p>NOTE: This is a fascinating note that many terrorists are not apparently &quot;crazy&quot; or terribly psychologically deranged but rather is misleading</p>
</blockquote>
<p>In the relationship that inevitably takes shape with the collaborators with justice, I have at times been struck by the astonishment and gratitude with which they welcomed even simple gestures of courtesy or human interest on my part, which were evidently interpreted as signs, almost as proof, of the existence of a personal relationship of acceptance and sympathy. It is something they marvel at and do not seem to have expected. This means that the Public Prosecutor does not become just the collaborator&#39;s reference point in the course of the criminal proceedings awaiting him, which are often long and complex. The Public Prosecutor also becomes the addressee of a trust that projects beyond the judicial occasion and concerns the future of that person.</p>
<p>One final note that was highlighted by this collection of perspectives was the fact that terrorists who collaborate on behalf of justice enjoy the apparent friendship that can be struck up with the public prosecutor. To me, it highlights the importance of meeting the social needs of these terrorists or would-be terrorists as a means to prevent terrorism.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Why Do People Become Terrorists? A Prosecutor&#39;s Experiences</em>. <a href="https://jacobzelko.com/08232022220130-people-become-terrorists">https://jacobzelko.com/08232022220130-people-become-terrorists</a>. August 23 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 23 Aug 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Social Determinants of Health, Violent Radicalization, and Terrorism: A Public Health Perspective  ]]>
  </title>
  <link> https://jacobzelko.com/08192022115354-health-terrorism-factors/index.html </link>
  <guid> https://jacobzelko.com/08192022115354-health-terrorism-factors/index.html </guid>
  <description>
    <![CDATA[  A review on how terrorism intersects with the social determinants of health  ]]>
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    <![CDATA[  
<h1>Social Determinants of Health, Violent Radicalization, and Terrorism: A Public Health Perspective</h1>
<p><strong>Date:</strong> August 19 2022</p>
<p><strong>Summary:</strong> A review on how terrorism intersects with the social determinants of health</p>
<p><strong>Keywords:</strong> ##bibliography #terrorism #social #determinants #health #cohesion #social #isolation  #archive</p>
<h1>Bibliography</h1>
<p>H. E. Alcalá, M. Z. Sharif, and G. Samari, &quot;Social Determinants of Health, Violent Radicalization, and Terrorism: A Public Health Perspective,&quot; Health Equity, vol. 1, no. 1, pp. 87–95, Aug. 2017, doi: 10.1089/heq.2016.0016.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Public Health Approach to Terrorism</li><li>Shortcomings of Addressing Terrorism from a Public Health Perspective</li><li>Factors Leading to Extremism</li><li>Studying Gang Violence as a Proxy for Terrorist Groups</li><li>Positive Approaches to Mitigate Radicalization</li><li>Problems with Whiteness and Terrorism Classifications</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>This paper was probably the best paper I have read on the subject of terrorism research and how it intersects with public health and the social determinants of health. It provided a comprehensive background on what terrorism and radicalism are as well as some very useful public health terminology introducing the concept of social cohesion and social capital. Furthermore, it got at the concept of how examining terrorism and gang violence from a public health perspective is very understudied and underutilized when exploring this space.</p>
<h3 id="public_health_approach_to_terrorism">Public Health Approach to Terrorism</h3>
<p>2.6&#37; of terrorism deaths happen in the West. 72&#37; belong to:</p>
<ul>
<li><p>Syria</p>
</li>
<li><p>Pakistan</p>
</li>
<li><p>Iraq</p>
</li>
<li><p>Nigeria</p>
</li>
<li><p>Afghanistan - Institute for Economics and Peace. Global Terrorism Index. New York, NY. 2015.</p>
</li>
</ul>
<p>Terrorism associated with negative mental health outcomes in:</p>
<ul>
<li><p>depression</p>
</li>
<li><p>anxiety</p>
</li>
<li><p>posttraumatic stress disorder</p>
</li>
</ul>
<p>Amongst others - Rousseau C, Jamil U, Bhui K, et al. Consequences of 9/11 and the war on terror on children’s and young adult’s mental health: a systematic review of the past 10 years. Clin Child Psychol Psychiatry. 2015;20:173–193.</p>
<h3 id="shortcomings_of_addressing_terrorism_from_a_public_health_perspective">Shortcomings of Addressing Terrorism from a Public Health Perspective</h3>
<p>Historically public health has focused on: </p>
<ul>
<li><p>Preparedness strategies</p>
</li>
<li><p>Containment of terrorist fallout</p>
</li>
</ul>
<p>What has been missing in this space is examining:</p>
<ul>
<li><p>Social determinants of terrorism</p>
</li>
<li><p>Determinants for violent radicalization</p>
</li>
<li><p>Risk factors for terrorism</p>
</li>
</ul>
<h3 id="factors_leading_to_extremism">Factors Leading to Extremism</h3>
<p>A case study from the United Kingdom shows that violent radicalization is an outcome of a complex interaction among social, political, cultural, historical, and interpersonal factors.7 </p>
<p>Discrimination can be thought of as a &quot;comorbidity&quot; of social isolation and exclusionary behavior. One form of systematic discrimination is immigration policy as it directly contributes to social segregation.9 Feelings of marginalization have been shown to lead to decreased self-worth and, in turn, increase radicalization.57 Those discriminated against could then fall easily to extremist influence and ideology as a result of weakening social cohesion.52</p>
<h3 id="studying_gang_violence_as_a_proxy_for_terrorist_groups">Studying Gang Violence as a Proxy for Terrorist Groups</h3>
<p>A proxy to study terrorism is to study gang violence</p>
<p>At the individual level, gangs and terrorist organizations appeal to individuals who are psychologically deviant, have limited access to socioeconomic opportunities, or are marginalized members of society.39–44 In fact, terrorist groups attract a range of unstable individuals.45</p>
<blockquote>
<p>NOTE: This seems to contradict the paper <a href="https://jacobzelko.com/08232022220130-people-become-terrorists">Why Do People Become Terrorists</a> as it notes that instead, it was observed how many of these people who are not fully psychologically deviant but rather of clear mind. Furthermore, in my attempt to reconcile such different observations, I would posit that rather, both explanations and comments are valid but that &quot;unstable individuals&quot; seem to conflate a kind of negative aspect to a person whereas the linked paper avoids the notion of unstable persons and instead explains how most of these people are of clear opinion.</p>
</blockquote>
<p>Goals generally exclusive to gangs:</p>
<ol>
<li><p>Symbolic ends</p>
</li>
<li><p>Looser structure</p>
</li>
<li><p>Less temporary collaborations</p>
</li>
<li><p>Shorter memberships</p>
</li>
<li><p>Gang occupies physical space.46</p>
</li>
</ol>
<p>The main difference between gangs and terrorist groups is that gangs are often not politically motivated.47 </p>
<h3 id="positive_approaches_to_mitigate_radicalization">Positive Approaches to Mitigate Radicalization</h3>
<p>Dutch police actively sought to integrate individuals from Syria by connecting them with a psychiatrist or mentor. Then, they provided assistance to find housing or means to return to school. To round out this reintegration process, they went even further to provide &quot;whatever they needed to fully integrate back into society.&quot;67 </p>
<p>This approach, believes that to fight terrorism through policing and/or &quot;profiling&quot; will create real or perceived discrimination, humiliation, and/or marginalization. Other papers have shown <a href="https://jacobzelko.com/08232022220130-people-become-terrorists">this to be an accurate assessment</a>.</p>
<p>&lt;&#33;–TODO: Add citations to note–&gt;</p>
<h3 id="problems_with_whiteness_and_terrorism_classifications">Problems with Whiteness and Terrorism Classifications</h3>
<p>Muslim Americans who come from the Middle East are often classified as &quot;White&quot; by categories set forth by the Office of Management and Budget. However, this is in complete opposition to the fact that a large proportion of Muslim Americans do not identify as &quot;White&quot;. 15 An implicit assumption and implicit problem is that people labeled &quot;White&quot; are assumed to be &quot;racially neutral.&quot;15 </p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Social Determinants of Health, Violent Radicalization, and Terrorism: A Public Health Perspective</em>. <a href="https://jacobzelko.com/08192022115354-health-terrorism-factors">https://jacobzelko.com/08192022115354-health-terrorism-factors</a>. August 19 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 19 Aug 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Assessing Phenotype Definitions for Algorithmic Fairness  ]]>
  </title>
  <link> https://jacobzelko.com/08122022205622-assessing-phenotype-fairness/index.html </link>
  <guid> https://jacobzelko.com/08122022205622-assessing-phenotype-fairness/index.html </guid>
  <description>
    <![CDATA[  A possible workflow for assessing fairness in the context of observational health studies  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Assessing Phenotype Definitions for Algorithmic Fairness</h1>
<p><strong>Date:</strong> August 12 2022</p>
<p><strong>Summary:</strong> A possible workflow for assessing fairness in the context of observational health studies</p>
<p><strong>Keywords:</strong> ##bibliography #phenotype #fairness #metrics #observational #health ##research #archive</p>
<h1>Bibliography</h1>
<p>T. Y. Sun, S. Bhave, J. Altosaar, and N. Elhadad, “Assessing Phenotype Definitions for Algorithmic Fairness,” arXiv:2203.05174 &#91;cs, q-bio&#93;, Mar. 2022, Accessed: Apr. 29, 2022. &#91;Online&#93;. Available: http://arxiv.org/abs/2203.05174</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Motivation</li><li>Purpose of Paper</li><li>Definitions</li><li>Types of Biases Found in Phenotyping</li><li>Common Fairness Metrics</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_motivation">Reading Motivation</h3>
<p>I wanted to read this article as it was highly recommended to me by my friend, Jaan Altosaar, one of the coauthors of this piece. I was very interested in the methods they used and the approach they took to address fairness in phenotypes as although I had heard about discrepancies in phenotypes, this was a bit of a watershed paper to read in my mind exposing how phenotyping can be so skewed. Really fantastic paper and will be returning to it.</p>
<h3 id="purpose_of_paper">Purpose of Paper</h3>
<p>Biases introduced at phenotype level can risk exacerbating existing health disparities by influencing clinical guidelines and public policy is what this paper argues</p>
<h3 id="definitions">Definitions</h3>
<p><strong>Phenotyping:</strong> Identifying a set of patients with a particular disease</p>
<p><strong>Phenotype Definitions:</strong> the process of sorting patients based on a disease they have into cohorts. This phenotyping to create definitions is done to learn more about a specific condition such as: 	- Epidemiological queries &#40;e.g., quantifying incidence of disease overtime&#41; &#40;Dubberke et al., 2012&#41; 	- Estimating and predicting risk &#40;Kaelber et al., 2012&#41;  	- Comparing effectiveness &#40;Suchard et al., 2019&#41;</p>
<p>The basis of demographic parity is the federal fourfths rule, which states that a selection rate for any race, sex, or ethnic group which is less than fourfths of the rate of the group with the highest rate will generally be regarded by the Federal enforcement agencies as evidence of adverse impact</p>
<h3 id="types_of_biases_found_in_phenotyping">Types of Biases Found in Phenotyping</h3>
<p><strong>Diagnosis Bias:</strong> a bias that prevents or causes delays to a disease diagnosis for a population due to differences in how that disease may present for that particular population. Example: 	- Heart attack literature finds that men complain of chest pain more frequently 	- Woman are likely to complain of other forms of pain. 	- Phenotype definition for heart attack with chest pain as the core symptom may not capture women &#40;Coventry et al., 2011&#41;.</p>
<p><strong>Treatment bias:</strong> a bias that prevents or causes delays to a treatment for population groups. Example: 	- VA black patients less likely to receive cardio-protective drugs than white patients &#40;Mehta et al., 2010 </p>
<p><strong>Access to Care Bias:</strong> biases that are systemic issues preventing patients from accessing healthcare options. Example: 	- Phenotype definition that requires a diagnosis to occur in outpatient settings could underrepresent patients.</p>
<h3 id="common_fairness_metrics">Common Fairness Metrics</h3>
<p><strong>Demographic Parity:</strong> difference in proportion for each protected class that receives the positive and negative outcome. Also referred to as &quot;independence&quot; or &quot;statistical parity&quot;.</p>
\[
P_0(\hat{Y}=\hat{y})=P_1(\hat{Y}=\hat{y}) \forall \hat{y} \in\{0,1\}
\]
<p><strong>Equality of Opportunity:</strong> when true positive rates of a model are equal across demographics</p>
\[
P_0(\hat{Y}=1 \mid Y=1)=P_1(\hat{Y}=1 \mid Y=1)
\]
<p><strong>Predictive Rate Parity:</strong> when probability of true labels given the predicted label is the same across classes</p>
\[
P_0(Y=1 \mid \hat{Y}=1)=P_1(Y=1 \mid \hat{Y}=1)
\]
<p>and </p>
\[
P_0(Y=0 \mid \hat{Y}=0)=P_1(Y=0 \mid \hat{Y}=0)
\]
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Assessing Phenotype Definitions for Algorithmic Fairness</em>. <a href="https://jacobzelko.com/08122022205622-assessing-phenotype-fairness">https://jacobzelko.com/08122022205622-assessing-phenotype-fairness</a>. August 12 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 12 Aug 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  What is   ]]>
  </title>
  <link> https://jacobzelko.com/05222022044134-normal-science/index.html </link>
  <guid> https://jacobzelko.com/05222022044134-normal-science/index.html </guid>
  <description>
    <![CDATA[  An overview of what normal science is according to Thomas Kuhn.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>What is</h1>
<p><strong>Date:</strong> May 22 2022</p>
<p><strong>Summary:</strong> An overview of what normal science is according to Thomas Kuhn.</p>
<p><strong>Keywords:</strong> #normal #science #characteristics #work #archive</p>
<h1>Bibliography</h1>
<p>T. S. Kuhn and I. Hacking, The Structure of Scientific Revolutions, Fourth edition. Chicago ; London: The University of Chicago Press, 2012.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>What Is &quot;Normal Science&quot;?<ol><li>What Are the Characteristics of Normal Science?</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="what_is_normal_science">What Is &quot;Normal Science&quot;?</h3>
<p>According to Kuhn, <em>normal science</em>, is research based on past scientific accomplishments that are considered the foundation for that area of investigation. Generally, this is the area where most scientists spend their time. The research done in normal science can be theoretical or empirical.</p>
<p>In the book, Kuhn referred to this as &quot;mop-up work&quot; and that this mopping up or &quot;filling out&quot; of science is what most scientists do. Although language such as &quot;mop-up&quot; work can make one think that Kuhn was being pejorative to these so-called &quot;scut scientists&quot;, he did not intend it so. In later versions of this book, he made a response to this point of confusion and clarified that this work still is fascinating and crucial in many ways to the advancement of science.</p>
<h4 id="what_are_the_characteristics_of_normal_science">What Are the Characteristics of Normal Science?</h4>
<p>An important aspect of normal science is that it does not engage with or seek out anything new. The invention of theories, development of new phenomena - anything abnormal - is not part of normal science. Novelty is abhorrent and antithetical to normal science.</p>
<p>Aside from this fundamental aspect of normal science, Kuhn posited that there are three general areas of research in normal science. He emphasized that they do not always hold or are always discrete from one another:</p>
<ol>
<li><p>Investigating questions around the fundamental facts found in a specific domain.</p>
</li>
<li><p>Questions that are predicted and expected to have answers existing within an already existing research domain.</p>
</li>
<li><p>Further articulating the fundamental facts held in a given domain.</p>
</li>
</ol>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What is</em>. <a href="https://jacobzelko.com/05222022044134-normal-science">https://jacobzelko.com/05222022044134-normal-science</a>. May 22 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 22 May 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Understanding Media: The Extensions of Man  ]]>
  </title>
  <link> https://jacobzelko.com/05222022225241-understanding-media-extensions/index.html </link>
  <guid> https://jacobzelko.com/05222022225241-understanding-media-extensions/index.html </guid>
  <description>
    <![CDATA[  An overview on this excellent book on media philosophy and media&#39;s intersection with society and its affects on people and community as well as eerie premonitions for the future of a technological age.  ]]>
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    <![CDATA[  
<h1>Understanding Media: The Extensions of Man</h1>
<p><strong>Date:</strong> May 22 2022</p>
<p><strong>Summary:</strong> An overview on this excellent book on media philosophy and media&#39;s intersection with society and its affects on people and community as well as eerie premonitions for the future of a technological age.</p>
<p><strong>Keywords:</strong> ##book #review #media #extensions #anxiety #society #medium #global #village #technology #archive</p>
<h1>Bibliography</h1>
<p>M. McLuhan, &quot;Understanding Media the Extensions of Man.&quot; London and New York, Oct. 1994.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading Motivation</li><li>The Action and the Reaction</li><li>The Age of Anxiety</li><li>The Medium Is the Message</li><li>Characteristics of a Medium</li><li>Types of Mediums<ol><li>Hot Mediums</li></ol></li><li>Creation of New Systems</li><li>Surviving an Impossible World</li><li>Media as Extensions of Tyranny and Labor</li><li>On Photography and Travel</li><li>How Media Changes Our Habits</li><li>Ads as Reflection of Actual Society</li><li>Media and Society</li><li>Comedy</li><li>Games as a Media</li><li>Media and the Nature of Work</li><li>The Nature of Radio as a Media</li><li>Television&#39;s Idiosyncrasies as a Media</li><li>Miscellany</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="reading_motivation">Reading Motivation</h3>
<p>I had long heard about this author ever since high school. I recall one day picking up a book of his at my community college&#39;s library and being both interested and overwhelmed by it. I have never much read philosophy so this was my first time encountering such a book and at the time, I found it impenetrable beyond my preliminary glances. It wasn&#39;t until this year I ventured on a project to read his magnum opus, <em>Understanding Media: The Extensions of Man</em>, a nearly 400 page endeavor that spanned nearly 6 months.</p>
<p>I am sure for anyone more expert, they could&#39;ve more readily finished such a book. But, although I found MacLuhan&#39;s ideas very fascinating as well as largely approachable, I could only truly approach and appreciate them if I read his work in very small chunks. So, I worked slowly through this book and have not regretted doing so a single moment.  This book was utterly life changing and has wide implications for the modern day despite this book being written nearly 70 years ago.</p>
<h3 id="the_action_and_the_reaction">The Action and the Reaction</h3>
<p>MacLuhan puts forth an initial thought of the &quot;action and the reaction&quot;. He mentions how in past ages, actions &#40;particularly the development of novel technologies like of a better plow or even printing press&#41; could be executed with relatively minimal care. Not &quot;minimal&quot; in the sense of a lack of importance but that the impact of an action rippled much more slowly through the world. The action could be followed by a well-thought out or better informed reaction by those the action was affecting.</p>
<p>However, today, &quot;the action and the reaction occur almost &#91;simultaneously&#93;&quot;. The action and reaction to a technology used to be slow but now is instantly leaving behind those incapable of adapting to the novelty. As MacLuhan observed, this simultaneity prevents an acclimation period for persons as much of humanity continues to &quot;think in the old, fragmented space and time patterns of the pre-electric age.&quot; <a href="https://jacobzelko.com//12242022202340-relativity-information-gaps">I intentionally invoke the word &quot;simultaneity&quot; here as I think this concept of &quot;action and reaction&quot; finds analogy within Einstein&#39;s notion of Relativity of Simultaneity</a> TODO: Create note on Relativity of Simultaneity using this link: https://sites.pitt.edu/~jdnorton/teaching/HPS<em>0410/chapters/Special</em>relativity<em>rel</em>sim/index.html and this one: https://sites.pitt.edu/~jdnorton/Goodies/rel<em>of</em>sim/index.html TODO: Create separate note on analogy between Relativity of Simultaneity and Information Dissemination</p>
<p>In the past, MacLuhan posits that we used technology to create &quot;extensions&quot; that &quot;extended&quot; parts of our bodies – like a knife extending our teeth or a firearm extending our fists. Not so in the electric era.  Rather, we have &quot;extended our central nervous system itself in a global embrace, abolishing both space and time&#91;.&#93;&quot; MacLuhan believes that we are rapidly approaching the point in society and technology wherein, &quot;the creative process of knowing will be collectively and corporately extended to the whole of human society. &#91;... Where&#93; it is no longer possible to adopt the aloof and dissociated role of the literate Westerner.&quot;</p>
<p>Everyone&#39;s business is now everyone&#39;s business.</p>
<h3 id="the_age_of_anxiety">The Age of Anxiety</h3>
<p>One idea that I think MacLuhan fantastically captured and explained much better than modern pundits and observers have done is how our age is one of anxiety. This has been bemoaned in many ways from multiple different groups – be they political, scientific or spiritual – but I have always found the notions being discussed to be buried too much in a specific domain or emerging trend. MacLuhan instead abstracts this concept to a much higher level that gives it, in my opinion, a much better resonance of the true problems of our electric age.</p>
<p>As he says, &quot;If the nineteenth century was the age of the editorial chair, ours is the century of the psychiatrist&#39;s couch.&quot; Something that was hard to grasp at first was the careful delineation he made between a &quot;chair&quot; and a &quot;couch&quot;. For him, the &quot;chair&quot; as an extension of man is a mechanical replacement of one&#39;s spine – a reinforcement to help the &quot;sitter&quot; maintain their position &#40;on an argument or view&#41;.  Instead, the modern &quot;couch&quot; becomes an icon that offers no such support but a sort of endless collapse into ease that thwarts &quot;the temptation to express private points of view and obviates the need to rationalize events.&quot;</p>
<p>&quot;This is the Age of Anxiety for the reason of the electric implosion that compels commitment and participation, quite regardless of any &quot;point of view&quot;,&quot; is a line of thinking that links back this notion of the &quot;Age of Anxiety&quot; to his original idea on the &quot;action and the reaction&quot;. As man in an electric society can no longer be an observer, the &quot;point of view&quot; &#40;which I understand as one&#39;s own beliefs and thoughts about the world&#41; one may have becomes an obstacle to a global society. Using the means of a psychiatrist&#39;s couch, we can become numbed to even our own beliefs and mental facilities. Instead, the current zeitgeist is to allow our &quot;point of view&quot; fall congruent to the will of the masses and governing authorities.</p>
<p>And here MacLuhan utters his famous line: &quot;the globe is no more than a village,&quot; to illustrate how every problem, every action, every perspective, is now standing and staring at you and how <em>you</em> will act. &quot;It is this implosive factor that alters the position of &#91;various&#93; groups. They can no longer be contained, in the political sense of limited association. They are now involved in our lives, as we in theirs, thanks to the electric media.&quot; We are now obligated to some involvement regardless of one exact point of view.</p>
<p>And therein lies the core problem of this Age of Anxiety: conflicting views in the electric age lead to adversity. Because what if we say, do, or think something that goes askew the prevailing global &quot;point of view&quot;? At best, one could be described as &quot;quaint&quot; or &quot;old-fashioned&quot; perhaps; at worst, one could be excommunicated from the village.</p>
<h3 id="the_medium_is_the_message">The Medium Is the Message</h3>
<p>I think I will have to read more of MacLuhan&#39;s work someday to better understand the concept of &quot;medium&quot; but this is my very loose understanding. As MacLuhan cryptically says, &quot;the medium is the message,&quot; forming the key motif of this entire book. He builds upon earlier language around &quot;extensions&quot; to explain that the message conveyed by a medium consists of the &quot;personal and social consequences&quot; of a medium &#40;i.e. an extension&#41; that result from the scale introduced into our lives by each extension. In short, the message itself is the consequences of a medium that affect reality we inhabit.</p>
<p>In compliment to the &quot;message&quot; of a medium, the &quot;&#39;content&#39; of any medium is always another medium.&quot; When I first read this, I was rather confused as it seemed in contradiction to my earlier understanding of what the message of a medium is. However, what MacLuhan was more referring to as &quot;content&quot; is not again so much the actual &quot;information&quot; in the message but more the &quot;method&quot; of its communication such as the following line of examples:</p>
<pre><code class="language-mermaid">graph LRSpeech --ContentOf--&gt; Writing</code></pre>
<p>Using MacLuhan&#39;s notion of the &quot;content&quot; of a medium, we see that &quot;speech&quot; is fundamentally the content of the medium, &quot;writing&quot;.</p>
<pre><code class="language-mermaid">graph LRWriting --ContentOf--&gt; Print</code></pre>
<p>Then &quot;writing&quot; is the content of the medium of &quot;print&quot;.</p>
<pre><code class="language-mermaid">graph LRPrint --ContentOf--&gt; Telegraph</code></pre>
<p>Finally, &quot;print&quot; is the content of the medium of the &quot;telegraph&quot;.  MacLuhan did point out that you could go even further from the root of &quot;speech&quot; to muscle contractions in one&#39;s throat, to thought, etc. However, I, as well as MacLuhan, found that to be a bit inane and I find it reasonable to call speech a &quot;fundamental&quot; content. It is a bit confusing how MacLuhan uses &quot;content&quot; in this scenario but to summarize my understanding of his central treatise on what he means by &quot;the medium is the message&quot;:</p>
<ul>
<li><p>&quot;&#91;The&#93; &#39;message&#39; of any medium &#91;...&#93; is the change &#91;...&#93; that it introduces into human affairs.&quot;</p>
</li>
<li><p>&quot;&#91;T&#93;he medium &#91;...&#93; shapes and controls &#91;...&#93; human association and action.&quot;</p>
</li>
<li><p>The &quot;content&quot; of any medium is another medium</p>
</li>
</ul>
<p>Even though the delineation between what is a &quot;medium&quot;, what is &quot;content&quot;, and what is a &quot;message&quot; is thorny to parse from MacLuhan&#39;s writing &#40;at least for me&#41;, I think this separation is wholly necessary. In fact, I think this delineation is what is missing from modern discourse on new mediums &#40;ergo technologies&#41;. In culmination of this initial discussion on mediums, I think the most important takeaway for me about mediums is this quote: &quot;it is only too typical that the &#39;content&#39; of any medium blinds us to the character of the medium.&quot; We can limit ourselves by only thinking within existing &quot;content&quot; of a given &quot;medium&quot; rather than viewing the medium wholly.</p>
<p>In short, new mediums enable entirely novel realities. Letters were once highly cherished not only because of their &quot;content&quot; &#40;i.e. the medium of writing and hand-writing&#41; and their &quot;information&quot; &#40;what did the letter say&#41; but also due to the constrained medium of a letter. Letters could take days or weeks to be delivered and would have to encapsulate much within their &quot;information&quot;. Now with the use of instant messaging, we have lost &quot;content&quot; &#40;i.e. hand-writing&#41; in this medium but it introduces an entirely new reality of interacting with the &quot;content&quot;. The &quot;information&quot; conveyed by the &quot;content&quot; of instant messaging can be trivialized much more easily due to the instantaneous nature of the &quot;medium&quot; of instant messaging.</p>
<h3 id="characteristics_of_a_medium">Characteristics of a Medium</h3>
<p>MacLuhan goes onto further explain the characteristics of a medium. &quot;General David Sarnoff made this statement: &quot;We are too prone to make technological instruments the scapegoats for the sins of those who wield them. The products of modern science are not in themselves good or bad; it is the way they are used that determines their value.&quot; That is the voice of the current somnambulism. Suppose we were to say, &quot;Apple pie is in itself neither good nor bad; it is the way it is used that determines its value.&quot; Or, &quot;The smallpox virus is in itself neither good nor bad; it is the way it is used that determines its value.&quot; Again, &quot;Firearms are in themselves neither good nor bad; it is the way they are used that determines their value.&quot; That is, if the slugs reach the right people firearms are good.&quot; &#40;McLuhan, 1994, p. 13&#41;</p>
<p>&quot;any medium has the power of imposing its own assumption on the unwary&quot; &#40;McLuhan, 1994, p. 17&#41;</p>
<p>&quot;greatest aid to this end is simply in knowing that the spell can occur immediately upon contact&quot; &#40;McLuhan, 1994, p. 17&#41;</p>
<p>Mediums are virulent. They can infect, inspire, and alter oneself all at once.</p>
<p>&quot;literate man is quite inclined to see others who cannot conform as somewhat pathetic&quot; &#40;McLuhan, 1994, p. 18&#41;</p>
<p>&quot;testers assume that uniform and continuous habits are a sign of intelligence, thus eliminating the ear man and the tactile man&quot; &#40;McLuhan, 1994, p. 18&#41;</p>
<p>Could it be said that these could be geniuses, those who do not conform?</p>
<p>The private point of view according to McLuhan is all at once an illusion as we become who we behold</p>
<p>How media affect or leach into a community should be the underlying area of study in examining the impacts of a media.</p>
<p>&quot;we are losing all confidence in our right to assign guilt&quot; &#40;McLuhan, 1994, p. 22&#41;</p>
<p>Assigning guilt is lost in the electric area. Calling anything wrong or crazy is impossible.</p>
<h3 id="types_of_mediums">Types of Mediums</h3>
<h4 id="hot_mediums">Hot Mediums</h4>
<p>&quot;A hot medium is one that extends one single sense in &quot;high definition.&quot; High definition is the state of being well filled with data.&quot; &#40;McLuhan, 1994, p. 30&#41;</p>
<p>&quot;A photograph is, visually, &quot;high definition.&quot; A cartoon is &quot;low definition,&quot; simply because very little visual information is provided. Telephone is a cool medium. or one of low definition, because the ear is given a meager amount of information&quot; &#40;McLuhan, 1994, p. 30&#41;</p>
<p>&quot;Hot media are, therefore, low in participation, and cool media are high in participation or completion by the audience&quot; &#40;McLuhan, 1994, p. 31&#41;</p>
<p>&quot;For myth is the instant vision of a complex process that ordinarily extends over a long period. Myth is contraction or implosion of any process, and the instant speed of electricity confers the mythic dimension on ordinary industrial and social&quot; &#40;McLuhan, 1994, p. 33&#41;</p>
<p>&quot;We are certainly coming within conceivable range of a world automatically controlled to the point where we could say, &quot;Six hours less radio in Indonesia next week or there will be a great falling off in literary attention.&quot; Or, &quot;We can &#33; program twenty more hours of TV in South Africa next week to cool down the tribal temperature raised by radio last week.&quot; Whole cultures could now be programmed to keep their emotional climate stable in the same way that we have begun to know something about maintaining equilibrium in the commercial economies of the world&quot; &#40;McLuhan, 1994, p. 36&#41; media based influence and control of ideas</p>
<h3 id="creation_of_new_systems">Creation of New Systems</h3>
<p>&quot;One of the most common causes of breaks in any system is the cross-fertilization with another system, such as happened to print with the steam press, or with radio and movies &#40;that yielded the talkies&#41;.&quot; &#40;McLuhan, 1994, p. 49&#41;</p>
<p>&quot;Except for light, all other media come in pairs, with one acting as the &quot;content&quot; of the other, obscuring the operation of both&quot; &#40;McLuhan, 1994, p. 63&#41;</p>
<p>McLuhan says that the artist is always the first person to make the intersection of mediums powerful. I wonder if that is so.</p>
<p>&quot;The moment of the meeting of media is a moment of freedom and release from the ordinary trance and numbness imposed by them on our senses.&quot; &#40;McLuhan, 1994, p. 67&#41;</p>
<p>&quot;That is what is meant when we say that we daily know more and more about man. We mean that we can translate more and more of ourselves into other forms of expression that exceed ourselves. Man is a form of expression who is traditionally expected to repeat himself and to echo the praise of his Creator&quot; &#40;McLuhan, 1994, p. 69&#41;</p>
<p>I really like this idea that man itself is a type of expression. Meaning, translation is infinite.</p>
<p>He makes an interesting observation about people who are illiterate to this age. They afford technology a sort of tribal magic much like how inexperienced investors expect to make money by throwing funds into stock.</p>
<p>Missing the whole for the parts.</p>
<p>&quot;The artist is the man in any field, scientific or humanistic, who grasps the implications of his actions and of new knowledge in his own time&quot; &#40;McLuhan, 1994, p. 78&#41;</p>
<p>He goes into great detail about how the artists are the ones able to react to new technologies. Is is them who can express the groans of the current reality.</p>
<h3 id="surviving_an_impossible_world">Surviving an Impossible World</h3>
<p>&quot;it is obvious that numbness is the result of any prolonged terror&quot; &#40;McLuhan, 1994, p. 39&#41;</p>
<p>&quot;The price of eternal vigilance is indifference.&quot; &#40;McLuhan, 1994, p. 39&#41;</p>
<p>Autoamputation is an interesting thought. I was unsure what was meant at first but realize it is the process by which to externalize or remove an internal irritant through some kind of self extension.</p>
<p>The suicidal autoamputation is a more heinous variety where all experiences are external separate to the body. Makes me think of VR and Meta. He points out that this happens because we are not equipped to handle such extreme serialization.</p>
<p>A &quot;closure&quot; is the idea that a person conforms perceptually to a media they are immersed in - like Psalm 113. Finally, more of an explanation on what closures are. They are the worlds media make for themselves.</p>
<p>&quot;We have to numb our central nervous system when it is extended and exposed, or we will die&quot; &#40;McLuhan, 1994, p. 57&#41;</p>
<p>&quot;Thus the age of anxiety and of electric media is also the age of the unconscious and of apathy.&quot; &#40;McLuhan, 1994, p. 58&#41;</p>
<p>&quot;Our private and corporate lives have become information processes just because we have put our central nervous systems outside us in electric technology.&quot; &#40;McLuhan, 1994, p. 63&#41;</p>
<p>&quot;The mark of our time is its revulsion against imposed patterns. We are suddenly eager to have things and people declare their beings totally.&quot; &#40;McLuhan, 1994, p. 8&#41;</p>
<p>Is it wise that we have this revulsion against patterns? Rather, I find it a possible societal regression of a kind. Why do we say in hubris that we know now better to live than in any time of human history? Is man, unrestrained, really man or some primal, base thing?</p>
<h3 id="media_as_extensions_of_tyranny_and_labor">Media as Extensions of Tyranny and Labor</h3>
<p>This is an interesting thought that as the means of communication are improved, so are the means of tyranny</p>
<p>&quot;A speed-up in communications always enables a central authority to extend its operations to more distant margins&quot; &#40;McLuhan, 1994, p. 109&#41;</p>
<p>Clothing can be thought of as an extension as it concerns one&#39;s ability interact with the environment.</p>
<p>Light enables a whole new world or worlds and abolishes the notion of night and day.</p>
<p>&quot;Time is money,&quot; and money is the store of other people&#39;s time and effort&quot; &#40;McLuhan, 1994, p. 152&#41;</p>
<p>Money is the ultimate store of collective human endeavors and the translator of work from priest to prostitute.</p>
<p>&quot;Automation, which is electronic, does not represent physical work so much as programmed knowledge&quot; &#40;McLuhan, 1994, p. 154&#41;</p>
<p>&quot;Although the medium is the message, the controls go beyond programming. The restraints are always directed to the &quot;content,&quot; which is always another medium. The content of the press is literary statement, as the content of the book is speech, and the content of the movie is the novel. So the effects of radio are quite independent of its programming&quot; &#40;McLuhan, 1994, p. 337&#41;</p>
<p>Money is not a closed system</p>
<h3 id="on_photography_and_travel">On Photography and Travel</h3>
<p>&quot;Time can be defeated, as it were, by reversal of its characteristics if only it be speeded up enough&quot; &#40;McLuhan, 1994, p. 170&#41;</p>
<p>&quot;The age of Jung and Freud is, above all, the age of the photograph, the age of the full gamut of self-critical attitudes&quot; &#40;McLuhan, 1994, p. 218&#41;</p>
<p>I love this critique of photos and travel. Basically, as time goes on the value of those hobbies or objects dull our senses or sense of wonder.</p>
<p>&quot;contrived, prefabricated.&quot; He is not concerned to find out why the photograph has done this to us. But in the same way intelligent people in the past always deplored the way in which the book had become a substitute for inquiry, conversation, and reflection, and never troubled to reflect on the nature of the printed book. The book reader has always tended to be passive, because that is the best way to read. Today, the traveler has become passive&quot; &#40;McLuhan, 1994, p. 219&#41;</p>
<h3 id="how_media_changes_our_habits">How Media Changes Our Habits</h3>
<p>&quot;Difficulty of access does not confer adequacy of perception, though it may involve an object in an aura of pseudo-values, as with a gem, a movie star, or an old master&quot; &#40;McLuhan, 1994, p. 220&#41;</p>
<p>&quot;This now brings us to the factual core of the &quot;pseudoevent,&quot; a label applied to the new media, in general, because of their power to give new patterns to our lives by acceleration of older patterns&quot; &#40;McLuhan, 1994, p. 220&#41;</p>
<p>&quot;All media exist to invest our lives with artificial perception and arbitrary values&quot; &#40;McLuhan, 1994, p. 220&#41;</p>
<p>&quot;The car has become the carapace, the protective and aggressive shell, of urban and suburban man&quot; &#40;McLuhan, 1994, p. 248&#41;</p>
<h3 id="ads_as_reflection_of_actual_society">Ads as Reflection of Actual Society</h3>
<p>&quot;Ads are news. What is wrong with them is that they are always good news&quot; &#40;McLuhan, 1994, p. 231&#41;</p>
<p>&quot;The steady trend in advertising is to manifest the product as an integral part of large social purposes and processes. With very large budgets the commercial artists have tended to develop the ad into an icon, and icons are not specialist fragments or aspects but unified and compressed images of complex kind. They focus a large region of experience in tiny compass&quot; &#40;McLuhan, 1994, p. 250&#41;</p>
<p>He has a bullseye view of ads in my opinion - its how the milk ads can appear so important to society.</p>
<p>&quot;there are the new massive iconic ads with their compressed images that include producer and consumer, seller and society in a single image&quot; &#40;McLuhan, 1994, p. 251&#41;</p>
<p>&quot;Ads seem to work on the very advanced principle that a small pellet or pattern in a noisy, redundant barrage of repetition will gradually assert itself. Ads push the principle of noise all the way to the plateau of persuasion. They are quite in accord with the procedures of brain-washing&quot; &#40;McLuhan, 1994, p. 251&#41;</p>
<p>&quot;Ads are not meant for conscious consumption. They are intended as subliminal pills for the subconscious in order to exercise an hypnotic spell&quot; &#40;McLuhan, 1994, p. 252&#41;</p>
<h3 id="media_and_society">Media and Society</h3>
<p>&quot;Any community that wants to expedite and maximize the exchange of goods and services has simply got to homogenize its social life&quot; &#40;McLuhan, 1994, p. 253&#41;</p>
<p>This line makes me think of of Kuhn&#39;s idea of incommensurability.</p>
<p>&quot;our intensely individualist and fragmented Western world, &quot;booze&quot; is a social bond and a means of festive involvement. By contrast, in closely knit tribal society &quot;booze&quot; is destructive of all social pattern and is even used as a means to mystical experience&quot; &#40;McLuhan, 1994, p. 258&#41;</p>
<p>Interesting observation on the role of alcohol in communities.</p>
<p>&quot;Just as we now try to control atom-bomb fallout, so we will one day try to control media fallout. Education will become recognized as civil defense against media fallout&quot; &#40;McLuhan, 1994, p. 337&#41;</p>
<h3 id="comedy">Comedy</h3>
<p>&quot;We think of humor as a mark of sanity for a good reason: in fun and play we recover the integral person, who in the workaday world or in professional life can use only a small sector of his being&quot; &#40;McLuhan, 1994, p. 259&#41;</p>
<p>Beautiful commentary on comedy as a sort of lifeline to the self in a way.</p>
<h3 id="games_as_a_media">Games as a Media</h3>
<p>&quot;A game is a machine that can get into action only if the players consent to become puppets for a time&quot; &#40;McLuhan, 1994, p. 263&#41;</p>
<p>&quot;Perhaps there is, just for this reason, a desperate need for games in a highly specialized industrial culture, since they are the only form of art accessible to many minds&quot; &#40;McLuhan, 1994, p. 266&#41;</p>
<p>&quot;A moral point of view too often serves as a substitute for understanding in technological matters. That games are extensions, not of our private but of our social selves, and that they are media of communication, should now be plain. If, finally, we ask, &quot;Are games mass media?&quot; the answer has to be &quot;Yes.&quot; Games are situations contrived to permit simultaneous participation of many people in some significant pattern of their own corporate lives.&quot; &#40;McLuhan, 1994, p. 270&#41;</p>
<h3 id="media_and_the_nature_of_work">Media and the Nature of Work</h3>
<p>&quot;From this time on, the mere specialist in any field was doomed to the sterility and inanity that echoed an archaic form of the departing mechanical age&quot; &#40;McLuhan, 1994, p. 275&#41;</p>
<p>Really makes me think of Willy Loman from Death of a Salesman and my own grandfather.</p>
<p>&quot;Therefore, no new idea ever starts from within a big operation. It must assail the organization from outside, through some small but competing organization&quot; &#40;McLuhan, 1994, p. 277&#41;</p>
<p>This reminds me of the verse that says how no student can be above his teacher.</p>
<p>&quot;Northcote Parkinson&#39;s law that &quot;work expands so as to fill the time available for its completion&quot; is precisely the zany dynamic provided by the telephone&quot; &#40;McLuhan, 1994, p. 290&#41;</p>
<p>&quot;the main &quot;work to be done&quot; is actually the movement of information. The mere interrelating of people by selected information is now the principal source of wealth in the electric age&quot; &#40;McLuhan, 1994, p. 291&#41;</p>
<p>It is an interesting remark on labor saving devices. Rather than freeing up time, you end up doing more labor and work than before. It brought down the barrier of entry for menial tasks so all could do them.</p>
<p>&quot;A mechanized world is always in the process of getting ready to live, and to this end it brings to bear the most appalling pomp of skill and method and resourcefulness&quot; &#40;McLuhan, 1994, p. 321&#41;</p>
<p>&quot;The world eagerly lined up to buy canned dreams&quot; &#40;McLuhan, 1994, p. 322&#41;</p>
<h3 id="the_nature_of_radio_as_a_media">The Nature of Radio as a Media</h3>
<p>&quot;To the blind, all things are unexpected&quot; &#40;McLuhan, 1994, p. 294&#41;</p>
<p>&quot;The telephone: speech without walls. The phonograph: music hall without walls. The photograph: museum without walls. The electric light: space without walls&quot; &#40;McLuhan, 1994, p. 313&#41;</p>
<p>&quot;What the Orient saw in a Hollywood movie was a world in which all the ordinary people had cars and electric stoves and refrigerators. So the Oriental now regards himself as an ordinary person who has been deprived of the ordinary man&#39;s birthright&quot; &#40;McLuhan, 1994, p. 325&#41;</p>
<p>&quot;If a government monopolizes the radio, then by mere repetition and byRADIO 325 exclusion of conflicting points of view it can determine the opinions of the population&quot; &#40;McLuhan, 1994, p. 328&#41;</p>
<p>&quot;This is inherent in the very nature of this medium, with its power to turn the psyche and society into a single echo chamber&quot; &#40;McLuhan, 1994, p. 331&#41;</p>
<h3 id="televisions_idiosyncrasies_as_a_media">Television&#39;s Idiosyncrasies as a Media</h3>
<p>&quot;TV is a medium that rejects the sharp personality and favors the presentation of processes rather than of products&quot; &#40;McLuhan, 1994, p. 341&#41;</p>
<p>&quot;grammars of newspaper, or radio, or of film, but who look askew and askance at all non-book media. The simplest question about any psychic aspect, even of the book medium, throws these people into a panic of uncertainty. Vehemence of projection of a single isolated attitude they mistake for moral vigilance. Once these censors became aware that in all cases &quot;the medium is the message&quot; or the basic source of effects, they would turn to suppression of media as such, instead of seeking &quot;content&quot; control. Their current assumption that content or programming is the factor that influences outlook and action is derived from the book medium, with its sharp cleavage between form and content&quot; &#40;McLuhan, 1994, p. 347&#41;</p>
<p>&quot;The failure of the sex-integration programs has provided the theme of much of the literature and psychoanalysis of the twentieth century. Race integration, undertaken on the basis of visual uniformity, is an extension of the same cultural strategy of literate man, for whom differences always seem to need eradication, both in sex and in race, and in space and in time&quot; &#40;McLuhan, 1994, p. 349&#41;</p>
<p>&quot;Print gave intensity and uniform precision, where before there had been a diffuse texture. Print brought in the taste for exact measurement and repeatability that we now associate with science and mathematics&quot; &#40;McLuhan, 1994, p. 350&#41;</p>
<p>&quot;The same new preference for depth participation has also prompted in the young a strong drive toward religious experience with rich liturgical overtones&quot; &#40;McLuhan, 1994, p. 354&#41;</p>
<p>&quot;anybody whose appearance strongly declares his role and status in life is wrong for TV Anybody who looks as if he might be a teacher, a doctor, a businessman, or any of a dozen other things all at the same time is right for TV&quot; &#40;McLuhan, 1994, p. 365&#41;</p>
<p>&quot;The TV child expects involvement and doesn&#39;t want a specialist job in the future. He does want a role and a deep commitment to his society&quot; &#40;McLuhan, 1994, p. 370&#41;</p>
<p>&quot;The TV child cannot see ahead because he wants involvement, and he cannot accept a fragmentary and merely visualized goal or destiny in learning or in life&quot; &#40;McLuhan, 1994, p. 370&#41;</p>
<h3 id="miscellany">Miscellany</h3>
<p>&quot;Since our new electric technology is not an extension of our bodies but of our central nervous systems, we now see all technology, including language, as a means of processing experience, a means of storing and speeding information. And in such a situation all technology can plausibly be regarded as weapons&quot; &#40;McLuhan, 1994, p. 379&#41;</p>
<p>&quot;Dewart in his Crintanity adn Revolution, wehn he points tothe obsolescence fo the fragemnted balance of power techniques. As an instrument of policy, modern war has come to mean &quot;the existence and end of one society tot he esclusion of another&quot; &#40;McLuhan, 1994, p. 381&#41;</p>
<p>&quot;Any subject taken in depth at once relates to other subjects. Arithmetic in grade three or nine, when taught in terms of number theory, symbolic logic, and cultural history, ceases to be mere practice in problems. Continued in their present patterns of fragmented unrelation, our school curricula will insure a citizenry unable to understand the cybernated world in which they live&quot; &#40;McLuhan, 1994, p. 383&#41;</p>
<p>&quot;Men are suddenly nomadic gatherers of knowledge, nomadic as never before, informed as never before, free from fragmentary specialism as never before –but also involved in the total social process as never before; since with electricity we extend our central nervous system globally, instantly interrelating every human experience&quot; &#40;McLuhan, 1994, p. 395&#41;</p>
<p>&quot;Tradition, in a word, is the sense of the total past as now&quot; &#40;McLuhan, 1994, p. 333&#41;</p>
<p>&quot;Everybody experiences far more than he understands&quot; &#40;McLuhan, 1994, p. 351&#41;</p>
<p>&quot;Before the huddle of the city, there was the food-gathering phase of man the hunter, even as men have now in the&quot; &#40;McLuhan, 1994, p. 378&#41;</p>
<p>&quot;electric age returned psychically and socially to the nomad state. Now, however, it is called information-gathering and data-processing&quot; &#40;McLuhan, 1994, p. 379&#41;</p>
<p>&quot;As Selye deals with the total environmental situation in his &quot;stress&quot; theory of disease, so the latest approach to media study considers not only the &quot;content&quot; but the medium and the cultural matrix within which the particular medium operates.&quot; &#40;McLuhan, 1994, p. 13&#41; How fascinating&#33; McLuhan knew of the stress theory of disease. I wonder how he knew that? I find it so fascinating the analogy McLuhan is making. It seems as though McLuhan proposes to say that the medium is an organ which interplay’s with Selye&#39;s theory. Rather than contradicting or separate from it, it subsists within and intertwined with this theory. In short, McLuhan seems to say that whereas Selye took an environmental approach to disease, McLuhan is taking a holistic view to mediums in a person&#39;s life</p>
<p>Selye&#39;s work preceded the work of Sir Michael Marmot in creating the Social Determinants of Health. Plus he was starting with the idea of metastatic load.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Understanding Media: The Extensions of Man</em>. <a href="https://jacobzelko.com/05222022225241-understanding-media-extensions">https://jacobzelko.com/05222022225241-understanding-media-extensions</a>. May 22 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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    <![CDATA[  On the Non-Linearity of Science  ]]>
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  <description>
    <![CDATA[  The radical view that Thomas Kuhn introduced that science itself is not moving to any specific truth but rather that the scientific organ continues to move forward in a very heap-like fashion.  ]]>
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<h1>On the Non-Linearity of Science</h1>
<p><strong>Date:</strong> May 22 2022</p>
<p><strong>Summary:</strong> The radical view that Thomas Kuhn introduced that science itself is not moving to any specific truth but rather that the scientific organ continues to move forward in a very heap-like fashion.</p>
<p><strong>Keywords:</strong> #view #paradigm #progress #science #history #textbooks #nonlinear #archive</p>
<h1>Bibliography</h1>
<p>T. S. Kuhn and I. Hacking, The Structure of Scientific Revolutions, Fourth edition. Chicago ; London: The University of Chicago Press, 2012.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>On the Non-Linearity of Science</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="on_the_non-linearity_of_science">On the Non-Linearity of Science</h3>
<p>One thing out of this book is that I very much appreciated and agreed with Kuhn&#39;s notion that science is not linear nor is it necessarily the result of a universal truth being uncovered. Rather, it is the confluence of emerging theories that evolve and find they can fit with other theories or paradigms. These newly combined theories then come together to possibly overturn or change the understanding of currently practiced science.</p>
<p>This fallacious notion of linear knowledge going to a particular truth about the world is based in part on science historians and textbook makers. As textbooks are designed to assist students in learning as much material as possible, the teacher with the textbook maker chooses to formulate a textbook around one particular area of knowledge thereby giving a sense of progress to a domain&#39;s particular truth. As science does not deal with all possible experiments but only those which are doable according to an existing paradigm, so too a textbook must be very judicious in what it presents to a student from its paradigm.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>On the Non-Linearity of Science</em>. <a href="https://jacobzelko.com/05222022050357-non-linearity-science">https://jacobzelko.com/05222022050357-non-linearity-science</a>. May 22 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 22 May 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Invoking New Paradigms  ]]>
  </title>
  <link> https://jacobzelko.com/05222022045931-new-paradigms/index.html </link>
  <guid> https://jacobzelko.com/05222022045931-new-paradigms/index.html </guid>
  <description>
    <![CDATA[  The costs of invoking a new paradigm and the lead-up to developing one  ]]>
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    <![CDATA[  
<h1>Invoking New Paradigms</h1>
<p><strong>Date:</strong> May 22 2022</p>
<p><strong>Summary:</strong> The costs of invoking a new paradigm and the lead-up to developing one</p>
<p><strong>Keywords:</strong> #new #paradigm #adoption #faith #archive</p>
<h1>Bibliography</h1>
<p>T. S. Kuhn and I. Hacking, The Structure of Scientific Revolutions, Fourth edition. Chicago ; London: The University of Chicago Press, 2012.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Invoking New Paradigms on Faith</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="invoking_new_paradigms_on_faith">Invoking New Paradigms on Faith</h3>
<p>A problem inherit to the development of new paradigms is that to adopt these new paradigms is most certainly an act of faith. Early adherents to a new paradigm must stand against the onslaught of problems that were solved or addressed by  a previous paradigm. They must simply have hope and faith that this new paradigm they have adopted will succeed in the areas where the previous paradigm failed. As Kuhn said:</p>
<blockquote>
<p>&quot;A decision of that kind can only be made on faith&quot;</p>
</blockquote>
<p>Even when this new paradigm is able to successfully surmount longstanding problems, Kuhn says that even still a vast majority of scientists will be apprehensive to adopt this paradigm. Why? Kuhn observed that two conditions must be met for further adoption:</p>
<ol>
<li><p>The new paradigm must solve outstanding problems that the prior paradigm could not.</p>
</li>
<li><p>Much of the problem solving tools from previous paradigms should still be able to be used in this new paradigm.</p>
</li>
</ol>
<p>In this sense, there is a type of verification or vetting of a new paradigm – an analogy to natural selection as Kuhn pointed out. For a new paradigm to be successful, not only must it address all problems hitherto encountered by prior paradigms, but be able to solve outstanding problems prior paradigms could not and the barrier to adopting this new paradigm must be minimal. &quot;No theory ever solves all &#91;...&#93; puzzles with which it is confronted at a given time; nor are the solutions already achieved often perfect,&quot; is a fitting bookend from Kuhn to remember when encountering new paradigms.</p>
<p>One small final footnote on new paradigms is an observation by Kuhn: the invention of a paradigm most generally comes from someone very young or new to the field where a paradigm exists that they are trying to change.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Invoking New Paradigms</em>. <a href="https://jacobzelko.com/05222022045931-new-paradigms">https://jacobzelko.com/05222022045931-new-paradigms</a>. May 22 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 22 May 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Scientific Revolutions  ]]>
  </title>
  <link> https://jacobzelko.com/05222022045723-scientific-revolutions/index.html </link>
  <guid> https://jacobzelko.com/05222022045723-scientific-revolutions/index.html </guid>
  <description>
    <![CDATA[  The careful nuance that Kuhn used when he created the phrase &#39;Scientific Revolution&#39;  ]]>
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    <![CDATA[  
<h1>Scientific Revolutions</h1>
<p><strong>Date:</strong> May 22 2022</p>
<p><strong>Summary:</strong> The careful nuance that Kuhn used when he created the phrase &#39;Scientific Revolution&#39;</p>
<p><strong>Keywords:</strong> ##outline #revolution #scientific #shift #paradigm #archive</p>
<h1>Bibliography</h1>
<p>T. S. Kuhn and I. Hacking, The Structure of Scientific Revolutions, Fourth edition. Chicago ; London: The University of Chicago Press, 2012.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>&quot;Scientific Revolutions&quot; and the Term &quot;Revolution&quot;</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="scientific_revolutions_and_the_term_revolution">&quot;Scientific Revolutions&quot; and the Term &quot;Revolution&quot;</h3>
<p>According to Kuhn, these crises are the requirements for a new paradigm to come forth. This leads to extraordinary science as this episode in a paradigm&#39;s life is extraordinary that causes a basic shift in how science is even conducted. This period, coined by Kuhn, is called a &quot;Scientific Revolution&quot;.</p>
<p>Kuhn was very particular in invoking the term &quot;revolution&quot;. He related the phrase &quot;scientific revolution&quot; analogously to a political revolution. In the same way that a political revolution is often fomented when a political body fails to serve adequately the growing body of its populace, so too are the grounds set for a scientific revolution.</p>
<p>Although a paradigm may shift how one does science, the world itself does not change. Rather, the way we view and operate in the world does. For the adoptees of a new paradigm, the adoptee must say something to the effect of &quot;I once understood X to be Y, but I was mistaken&quot; and in doing so admit a form of error in looking at reality.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Scientific Revolutions</em>. <a href="https://jacobzelko.com/05222022045723-scientific-revolutions">https://jacobzelko.com/05222022045723-scientific-revolutions</a>. May 22 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 22 May 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  What Are Kuhnian Paradigms?  ]]>
  </title>
  <link> https://jacobzelko.com/05222022044626-kuhnian-paradigm/index.html </link>
  <guid> https://jacobzelko.com/05222022044626-kuhnian-paradigm/index.html </guid>
  <description>
    <![CDATA[  An overview on what Thomas Kuhn meant by paradigm and how that applies to science.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>What Are Kuhnian Paradigms?</h1>
<p><strong>Date:</strong> May 22 2022</p>
<p><strong>Summary:</strong> An overview on what Thomas Kuhn meant by paradigm and how that applies to science.</p>
<p><strong>Keywords:</strong> ##outline #science #normal #exemplar #paradigm #characteristics #archive</p>
<h1>Bibliography</h1>
<p>T. S. Kuhn and I. Hacking, The Structure of Scientific Revolutions, Fourth edition. Chicago ; London: The University of Chicago Press, 2012.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>What Was Kuhn&#39;s Concept of a Paradigm?<ol><li>What Are the Characteristics of a Paradigm?</li><li>What Are the Benefits of Choosing a Paradigm?</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="what_was_kuhns_concept_of_a_paradigm">What Was Kuhn&#39;s Concept of a Paradigm?</h3>
<p>Kuhn reintroduced into the modern English lexicon the word, &quot;paradigm&quot;. Before his time, the term was rather archaic. A paradigm is the background through which normal science is conducted loosely speaking. Another way of thinking about it is from Discord user <em>heynonnynonnie</em> suggesting that a paradigm is a consensus agreed upon by a group of practitioners of a field.</p>
<h4 id="what_are_the_characteristics_of_a_paradigm">What Are the Characteristics of a Paradigm?</h4>
<p>When he used the word, as Kuhn admitted himself, he overloaded the term to mean quite a number of things. To my understanding, this was my gist of a Kuhnian paradigm in that paradigms generally have two core characteristics:</p>
<ol>
<li><p>Unprecedented and can sustain practitioners</p>
</li>
<li><p>Open-ended and with problems to be solved or investigated</p>
</li>
</ol>
<p>Endemic to paradigms is that they posit theories around a domain of research. For a paradigm to be accepted, it must propose a better theory than its predecessors or competitors. Furthermore, a proposed new paradigm is not required to address every fact of the world.</p>
<h4 id="what_are_the_benefits_of_choosing_a_paradigm">What Are the Benefits of Choosing a Paradigm?</h4>
<p>When a domain decides upon a paradigm, avenues of research can now be readily scoped. By presupposing paradigm, questions can now be posed within the context of the paradigm. In accordance to the paradigm, it can be reasonably assumed that solutions can be found.</p>
<p>A benefit that did not immediately appear to me was the insulating properties of a paradigm. An example that Kuhn suggested is that in the social sciences, one has to frame an avenue of research by its importance to society &#40;such as studying racial discrimination, etc.&#41;. Problems such as these are notoriously difficult to frame and reach a quorum consensus on due to possibly many competing schools of thought or groups. Instead, by keeping a conversation limited to the adherents of a specific paradigm, a researcher can easily keep moving forward through problems without having to strive against competing schools of thought. Furthermore, the insulating power of a paradigms gives a researcher the ability to solely focus on problems they think they can solve or are solvable.</p>
<p>I will admit, his example of social scientists was at first confusing. But, upon reflection, what made this example make sense is that he later explained his decision to have this as an example due to the fact that there are often many competing paradigms in these areas. This conflict makes progress difficult as many people still argue the fundamentals of these sciences.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Are Kuhnian Paradigms?</em>. <a href="https://jacobzelko.com/05222022044626-kuhnian-paradigm">https://jacobzelko.com/05222022044626-kuhnian-paradigm</a>. May 22 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 22 May 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  The Structure of Scientific Revolutions  ]]>
  </title>
  <link> https://jacobzelko.com/05152022174848-structure-revolutions/index.html </link>
  <guid> https://jacobzelko.com/05152022174848-structure-revolutions/index.html </guid>
  <description>
    <![CDATA[  A book review of Thomas Kuhn&#39;s most famous book that challenged all of the philosophy of science and introduced such concepts as normal science, paradigm shift, why non-scientific fields struggle with similar revolutions, and when one can adopt new paradigms.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>The Structure of Scientific Revolutions</h1>
<p><strong>Date:</strong> May 15 2022</p>
<p><strong>Summary:</strong> A book review of Thomas Kuhn&#39;s most famous book that challenged all of the philosophy of science and introduced such concepts as normal science, paradigm shift, why non-scientific fields struggle with similar revolutions, and when one can adopt new paradigms.</p>
<p><strong>Keywords:</strong> ##book ##blog ##outline #review #normal #science #paradigm #shift #revolution #science #philosophy #crisis #archive</p>
<h1>Bibliography</h1>
<p>T. S. Kuhn and I. Hacking, The Structure of Scientific Revolutions, Fourth edition. Chicago; London: The University of Chicago Press, 2012.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Introduction</li><li>What Is <em>Normal Science</em>?<ol><li>What Are the Characteristics of Normal Science?</li></ol></li><li>What Was Kuhn&#39;s Concept of a Paradigm?<ol><li>What Are the Characteristics of a Paradigm?</li><li>What Are the Benefits of Choosing a Paradigm?</li></ol></li><li>What Causes the Downfall of a Paradigm?<ol><li>What Happens When a Paradigm Is in Crisis?</li><li>Extraordinary Problems</li></ol></li><li>&quot;Scientific Revolutions&quot; and the Term &quot;Revolution&quot;</li><li>Invoking New Paradigms on Faith</li><li>On the Non-Linearity of Science</li><li>Additional Notes<ol><li>Paradigm Shifts in Other Domains</li><li>Non-Kuhnian Revolutions or Domain Transformations</li></ol></li><li>Conclusion</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="introduction">Introduction</h3>
<p>This book has had an immense impact in the world of science. From how science is taught to how science is thought about, Kuhn&#39;s notions of scientific revolution resonated across nearly all domains of science as well as touching into the arts. The central conceit that Kuhn stated in this book is that the scientific community knows what the world is like. I was recommended this book by my friend, collaborator, and Category Theorist, <a href="https://www.jpfairbanks.com/">Professor James P. Fairbanks</a> I can see why it was recommended as it fits in quite nicely to the ensuing philosophical ideas found in <a href="https://jacobzelko.com/11082021041951-category-theory-scientists">Category Theory</a>.</p>
<h3 id="what_is_normal_science">What Is <em>Normal Science</em>?</h3>
<p><a href="https://jacobzelko.com/05222022044134-normal-science">Note for atomic concept</a></p>
<p>According to Kuhn, <em>normal science</em>, is research based on past scientific accomplishments that are considered the foundation for that area of investigation. Generally, this is the area where most scientists spend their time. The research done in normal science can be theoretical or empirical.</p>
<p>In the book, Kuhn referred to this as &quot;mop-up work&quot; and that this mopping up or &quot;filling out&quot; of science is what most scientists do. Although language such as &quot;mop-up&quot; work can make one think that Kuhn was being pejorative to these so-called &quot;scut scientists&quot;, he did not intend it so. In later versions of this book, he made a response to this point of confusion and clarified that this work still is fascinating and crucial in many ways to the advancement of science.</p>
<h4 id="what_are_the_characteristics_of_normal_science">What Are the Characteristics of Normal Science?</h4>
<p>An important aspect of normal science is that it does not engage with or seek out anything new. The invention of theories, development of new phenomena - anything abnormal - is not part of normal science. Novelty is abhorrent and antithetical to normal science.</p>
<p>Aside from this fundamental aspect of normal science, Kuhn posited that there are three general areas of research in normal science. He emphasized that they do not always hold or are always discrete from one another:</p>
<ol>
<li><p>Investigating questions around the fundamental facts found in a specific domain.</p>
</li>
<li><p>Questions that are predicted and expected to have answers existing within an already existing research domain.</p>
</li>
<li><p>Further articulating the fundamental facts held in a given domain.</p>
</li>
</ol>
<h3 id="what_was_kuhns_concept_of_a_paradigm">What Was Kuhn&#39;s Concept of a Paradigm?</h3>
<p><a href="https://jacobzelko.com/05222022044626-kuhnian-paradigm">Note for atomic concept</a></p>
<p>Kuhn reintroduced into the modern English lexicon the word, &quot;paradigm&quot;. Before his time, the term was rather archaic. A paradigm is the background through which normal science is conducted loosely speaking. Another way of thinking about it is from online user <em>heynonnynonnie</em> suggesting that a paradigm is a consensus agreed upon by a group of practitioners of a field.</p>
<h4 id="what_are_the_characteristics_of_a_paradigm">What Are the Characteristics of a Paradigm?</h4>
<p>When he used the word, as Kuhn admitted himself, he overloaded the term to mean quite a number of things. To my understanding, this was my gist of a Kuhnian paradigm in that paradigms generally have two core characteristics:</p>
<ol>
<li><p>Unprecedented and can sustain practitioners</p>
</li>
<li><p>Open-ended and with problems to be solved or investigated</p>
</li>
</ol>
<p>Endemic to paradigms is that they posit theories around a domain of research. For a paradigm to be accepted, it must propose a better theory than its predecessors or competitors. Furthermore, a proposed new paradigm is not required to address every fact of the world.</p>
<h4 id="what_are_the_benefits_of_choosing_a_paradigm">What Are the Benefits of Choosing a Paradigm?</h4>
<p>When a domain decides upon a paradigm, avenues of research can now be readily scoped. By presupposing paradigm, questions can now be posed within the context of the paradigm. In accordance to the paradigm, it can be reasonably assumed that solutions can be found.</p>
<p>A benefit that did not immediately appear to me was the insulating properties of a paradigm. An example that Kuhn suggested is that in the social sciences, one has to frame an avenue of research by its importance to society &#40;such as studying racial discrimination, etc.&#41;. Problems such as these are notoriously difficult to frame and reach a quorum consensus on due to possibly many competing schools of thought or groups. Instead, by keeping a conversation limited to the adherents of a specific paradigm, a researcher can easily keep moving forward through problems without having to strive against competing schools of thought. Furthermore, the insulating power of a paradigms gives a researcher the ability to solely focus on problems they think they can solve or are solvable.</p>
<p>I will admit, his example of social scientists was at first confusing. But, upon reflection, what made this example make sense is that he later explained his decision to have this as an example due to the fact that there are often many competing paradigms in these areas. This conflict makes progress difficult as many people still argue the fundamentals of these sciences.</p>
<h3 id="what_causes_the_downfall_of_a_paradigm">What Causes the Downfall of a Paradigm?</h3>
<p><a href="https://jacobzelko.com/05222022044910-downfall-kuhnian-paradigm">Note on atomic concept</a></p>
<p>Normal science certainly is clear, safe, and predictable. But, what if a scientist finds results that do not fit within a paradigm? What if a result, ruling out all possible errors carried forth by a highly scrupulous researcher, is simply unexplainable - an anomaly against the backdrop of a paradigm? To Kuhn, this marks an important inflection point in adopted paradigms.</p>
<p>Novelty in science only emerges with resistance and difficulty because any, as Kuhn wisely points out, researchers who investigate every anomaly will not get much done. But at some point, these anomalies will continue to accumulate to the point of being unignorable to adherents of a paradigm. A sort of malcontent will arise adherents and to <a href="https://jacobzelko.com/07222020181007-famous-quotes">quote Sherlock Holmes, &quot;When you have eliminated the impossible, whatever remains, however improbable, must be the truth.&quot;</a> And that truth is that an accepted paradigm is no longer sufficient to explain a domain which leads to a period of significant upheaval.</p>
<p>Kuhn characterized the downfall of a paradigm in three generic ways:</p>
<ol>
<li><p>Awareness of anomaly</p>
</li>
<li><p>Further recognition of awareness</p>
</li>
<li><p>Contested possible change or challenge to the existing paradigm</p>
</li>
</ol>
<h4 id="what_happens_when_a_paradigm_is_in_crisis">What Happens When a Paradigm Is in Crisis?</h4>
<p>When the anomalies are fully unconscionable, they are finally acknowledged and, to quote Kuhn:</p>
<blockquote>
<p>&quot;Discovery commences with &#91;...&#93; awareness of anomaly&quot;</p>
</blockquote>
<p>The previous paradigm prepared an adherent on how to detect an anomaly and in a way, set up its own downfall. At this stage of upheaval, many will attempt to explain or address the anomalous behavior. A new era of discovery in the face of a failing paradigm marks this interstitial period of an outdated paradigm where many speculative and unarticulated theories abound - often at odds with one another in some way. The previous paradigm&#39;s rules become hazy and the rules of normal research begin to veer away from its typical, standard process.</p>
<h4 id="extraordinary_problems">Extraordinary Problems</h4>
<p>This problem leads normal science into a rather interesting process of science called &quot;extraordinary science&quot;. Extraordinary science is an offshoot of normal science that exists when a paradigm is in crisis and to address the paradigm in crisis. It is the science that either repairs, questions, or proves the deficiency of an existing paradigm. Important to note about extraordinary science is that they are never known at the outset of a paradigm but only after advanced normal research in the context of a given paradigm.</p>
<h3 id="scientific_revolutions_and_the_term_revolution">&quot;Scientific Revolutions&quot; and the Term &quot;Revolution&quot;</h3>
<p><a href="https://jacobzelko.com/05222022045723-scientific-revolutions">Note on atomic concept</a></p>
<p>According to Kuhn, these crises are the requirements for a new paradigm to come forth. This leads to extraordinary science as this episode in a paradigm&#39;s life is extraordinary that causes a basic shift in how science is even conducted. This period, coined by Kuhn, is called a &quot;Scientific Revolution&quot;.</p>
<p>Kuhn was very particular in invoking the term &quot;revolution&quot;. He related the phrase &quot;scientific revolution&quot; analogously to a political revolution. In the same way that a political revolution is often fomented when a political body fails to serve adequately the growing body of its populace, so too are the grounds set for a scientific revolution.</p>
<p>Although a paradigm may shift how one does science, the world itself does not change. Rather, the way we view and operate in the world does. For the adoptees of a new paradigm, the adoptee must say something to the effect of &quot;I once understood X to be Y, but I was mistaken&quot; and in doing so admit a form of error in looking at reality.</p>
<h3 id="invoking_new_paradigms_on_faith">Invoking New Paradigms on Faith</h3>
<p><a href="https://jacobzelko.com/05222022045931-new-paradigms">Note on atomic concept</a></p>
<p>A problem inherit to the development of new paradigms is that to adopt these new paradigms is most certainly an act of faith. Early adherents to a new paradigm must stand against the onslaught of problems that were solved or addressed by  a previous paradigm. They must simply have hope and faith that this new paradigm they have adopted will succeed in the areas where the previous paradigm failed. As Kuhn said:</p>
<blockquote>
<p>&quot;A decision of that kind can only be made on faith&quot;</p>
</blockquote>
<p>Even when this new paradigm is able to successfully surmount longstanding problems, Kuhn says that even still a vast majority of scientists will be apprehensive to adopt this paradigm. Why? Kuhn observed that two conditions must be met for further adoption:</p>
<ol>
<li><p>The new paradigm must solve outstanding problems that the prior paradigm could not.</p>
</li>
<li><p>Much of the problem solving tools from previous paradigms should still be able to be used in this new paradigm.</p>
</li>
</ol>
<p>In this sense, there is a type of verification or vetting of a new paradigm – an analogy to natural selection as Kuhn pointed out. For a new paradigm to be successful, not only must it address all problems hitherto encountered by prior paradigms, but be able to solve outstanding problems prior paradigms could not and the barrier to adopting this new paradigm must be minimal. &quot;No theory ever solves all &#91;...&#93; puzzles with which it is confronted at a given time; nor are the solutions already achieved often perfect,&quot; is a fitting bookend from Kuhn to remember when encountering new paradigms.</p>
<p>One small final footnote on new paradigms is an observation by Kuhn: the invention of a paradigm most generally comes from someone very young or new to the field where a paradigm exists that they are trying to change.</p>
<h3 id="on_the_non-linearity_of_science">On the Non-Linearity of Science</h3>
<p><a href="https://jacobzelko.com/05222022050357-non-linearity-science">Note on atomic concept</a></p>
<p>One thing out of this book is that I very much appreciated and agreed with Kuhn&#39;s notion that science is not linear nor is it necessarily the result of a universal truth being uncovered. Rather, it is the confluence of emerging theories that evolve and find they can fit with other theories or paradigms. These newly combined theories then come together to possibly overturn or change the understanding of currently practiced science.</p>
<p>This fallacious notion of linear knowledge going to a particular truth about the world is based in part on science historians and textbook makers. As textbooks are designed to assist students in learning as much material as possible, the teacher with the textbook maker chooses to formulate a textbook around one particular area of knowledge thereby giving a sense of progress to a domain&#39;s particular truth. As science does not deal with all possible experiments but only those which are doable according to an existing paradigm, so too a textbook must be very judicious in what it presents to a student from its paradigm.</p>
<h3 id="additional_notes">Additional Notes</h3>
<p>As I wrap up this review of <em>The Structure of Scientific Revolutions</em>, here are some additional notes that didn&#39;t quite fit in the overall review. I did still find these pertinent as well as helpful in expanding thoughts about paradigms.</p>
<h4 id="paradigm_shifts_in_other_domains">Paradigm Shifts in Other Domains</h4>
<p>Outside of Science, Technology, Engineering, and Mathematics, Kuhn&#39;s notion of paradigm shifts do occur. Such a paradigm shift based on Kuhn&#39;s writings in an area such as the social sciences could be - and I am making an educated guess here - something akin to the near modern universal condemnation and outlawing of slavery. However, to this end Kuhn posited that unlike the other natural sciences, there still exist competing schools of thought. A visceral modern example is that social scientists also have to defend their choice of a research problem such as examining race in the context of the <a href="https://jacobzelko.com/07112020161337-social-determinants-health">social determinants of health</a> where other existing schools of thought may fiercely disagree on the validity of such endeavors.</p>
<p>Furthermore, Kuhn gave the great example that, &quot;the man who argues that philosophy &#91;...&#93; has made no progress emphasizes that there are still Aristotelians, not that Aristotelianism has failed to progress,&quot; I am in agreement with Kuhn in that it is not that schools of thought outside Science, Technology, Engineering, and Mathematics are not making progress. It is that their are much more fundamental conflicts in these spaces that have yet to be reconciled in sufficient ways.</p>
<p>In an online group discussion, the user <em>ish-i-ness</em> furthered this idea to the arts that, &quot;that in the arts you could even say that there is a desire to discover an aesthetic truth, something that is indisputably, objectively beautiful and thought provoking, rather than just a fad that is only interesting because it’s appeals to a particular, subjective set of preferences.&quot; Here, <em>ish-i-ness</em> invokes this notion of aesthetic truth which is associated with Theodore Adorno.</p>
<h4 id="non-kuhnian_revolutions_or_domain_transformations">Non-Kuhnian Revolutions or Domain Transformations</h4>
<p>In an online group discussion, the user <em>heynonnynonnie</em>, made a great point that non-Kuhnian scientific revolutions happen more frequently than the bigger Kuhnian scientific revolutions &#40;such as the heliocentric versus geocentric theory, etc.&#41;. As these are much smaller scale revolutions and do not affect the entirety of science, I call these &quot;domain transformations&quot; as they transform or affect a particular domain&#39;s way of operating but not the rest of science as a whole. <em>heynonnynonnie</em> gave the example that the discovery of the DNA structure, though fantastic and a major discovery, provided only pure information that fit within the preexisting paradigms.</p>
<h3 id="conclusion">Conclusion</h3>
<p>I thought this book was well done and also worth this lengthy analysis. It provided context to a lot of ideas that were born from the notions Kuhn coined here. For me, it felt like giving me a bit more of a better foundation to understand better how to operate in domains. Even if this piece is labeled more as a philosophy of science piece, it could easily also be considered a sociological exploration of academia as a whole. I recommend the read, but also, not to take the notions as literally or seriously as possible. Kuhn himself suggested that as he later would get inundated with letters saying that there was a revolution happening because of X - help me. As judicious as Kuhn was in using the term revolution, we too must be careful to recognize when a revolution or paradigm shift is occurring.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>The Structure of Scientific Revolutions</em>. <a href="https://jacobzelko.com/05152022174848-structure-revolutions">https://jacobzelko.com/05152022174848-structure-revolutions</a>. May 15 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 15 May 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Personal Perspectives on Faith  ]]>
  </title>
  <link> https://jacobzelko.com/05072022162026-personal-faith-perspectives/index.html </link>
  <guid> https://jacobzelko.com/05072022162026-personal-faith-perspectives/index.html </guid>
  <description>
    <![CDATA[  An evolving note on my perspectives on faith as a practicing  ]]>
  </description>  
  
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<h1>Personal Perspectives on Faith</h1>
<p><strong>Date:</strong> May 7 2022</p>
<p><strong>Summary:</strong> An evolving note on my perspectives on faith as a practicing</p>
<p><strong>Keywords:</strong> ##blog #faith #christianity #nicean #creed #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p><em>A living note on my faith as a Christian</em></p>
<p>Saying you are a Christian is a loaded statement that colors a spectrum. It brings to mind the halls of a quiet countryside monastery echoing with billowing hymns to outraged shouts of damnation from a pulpit. Saying you are a Christian is strangely all encompassing and hollow simultaneously.</p>
<p>I am a Christian and this blog post is an overview of what <em>I</em> mean by that.</p>
<p>My faith as a Christian affects every aspect of my life as I view God as the Lord of All. I mean &quot;Lord of All&quot; as I view God is omniscient over what exists and what will be. He is the master programmer, the master engineer, the master author, the master – . And as a result of that, I view Him as the one source of knowledge and guidance.</p>
<p>I do not mean that one can learn everything from the Bible. There is no book in the Bible that contains Kepler&#39;s Laws of Planetary Motion or the Central Limit Theorem.  Rather, God communicates a framework through His Word, the Bible, that proves sufficient for every domain and has given us minds and bodies to go and explore His created world.</p>
<p>By God, it is my understanding that there are definite &quot;right&quot; and &quot;wrong&quot; absolutes set forth by a good and righteous God. A result of this I must address is the sad stereotype that unfortunately resonates all too frequently with the truth is the judgemental behavior found in Christian circles. This often has a cultural and historical aspect on how persons view religious institutions - I do not want to discuss that.</p>
<p>Instead, I endeavor practicing the ability to disagree with but accept others. Sadly, this is a skill that is all too-lacking - amongst Christians and beyond. I am perfectly fine discussing generally anything and perhaps most importantly, disagreeing over something. This is a pattern set forth by Jesus from the beginning. Jesus was not sent to those who agreed with him but those who so fiercely opposed Him that they killed Him and still showed compassion for his murderers.</p>
<p>And most important in my faith is my acceptance and trust in the person who is Jesus Christ as the Son of God and Savior of the World. Saving us from what? Ourselves. As I believe there are definite &quot;right&quot; and &quot;wrong&quot; absolutes, it would follow that there are consequences for when we pursue &quot;wrong&quot;. And out of those consequences, the most severe is separation from God both now while we are alive and the eternity that our souls find ourselves in upon our demise.</p>
<p>And Jesus is that saving power - that bridge which brings us from that separation to eternity with God. As no one has ever done what is &quot;right&quot; except only Jesus who was both God and a person just like us. I trust that Jesus was killed around 30 CE, He was entombed for three days, resurrected proving that death has no mastery over God, and ascended to the right hand of God. In short, when Jesus said to the grieving sister Martha over the death of her brother, Lazarus:</p>
<pre><code class="language-julia">Jesus said to her,&quot;I am the resurrection and the life. 
The one who believes in me will live, even though they die; 
and whoever lives by believing in me will never die.Do you believe this?&quot;- John 11:25 - 26</code></pre>
<p>To which I respond: &quot;yes&quot;.  There are multiple omissions of my credo that I have left out here for brevity. I have further included a copy of the Nicaean Creed which I am in full accord with that can help fill in some of those gaps, succinctly:</p>
<blockquote>
<p><strong>Nicaean Creed</strong></p>
</blockquote>
<blockquote>
<p>I believe in one God, the Father almighty, maker of heaven and earth, of all things visible and invisible. </p>
<p>I believe in one Lord Jesus Christ, the Only Begotten Son of God, born of the Father before all ages. God from God, Light from Light, true God from true God, begotten, not made, consubstantial with the Father; through him all things were made. For us men and for our salvation he came down from heaven, and by the Holy Spirit was incarnate of the Virgin Mary, and became man.</p>
<p>For our sake he was crucified under Pontius Pilate, he suffered death and was buried, and rose again on the third day in accordance with the Scriptures. He ascended into heaven and is seated at the right hand of the Father. He will come again in glory</p>
</blockquote>
<p>to judge the living and the dead and his kingdom will have no end.</p>
<blockquote>
<p>I believe in the Holy Spirit, the Lord, the giver of life, who proceeds from the Father and the Son, who with the Father and the Son is adored and glorified, who has spoken through the prophets.</p>
<p>I believe in one, holy, catholic and apostolic Church. I confess one Baptism for the forgiveness of sins and I look forward to the resurrection of the dead and the life of the world to come. Amen.</p>
</blockquote>
<p>To leave off, please note: I am not a perfect Christian. No one is or can be. I try to follow God with confident steps; oftentimes, it looks more like a faltering walk. Yet, by the grace of God, I have courage that each day can be better and I can show Christ&#39;s love to others not through faux perfection of arrogance but the ordinary efforts of a common man with an extraordinary Savior.</p>
<p><em>Solil Deo Gloria – To God Alone Be the Glory.</em></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Personal Perspectives on Faith</em>. <a href="https://jacobzelko.com/05072022162026-personal-faith-perspectives">https://jacobzelko.com/05072022162026-personal-faith-perspectives</a>. May 7 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 07 May 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Strategies for Evaluating Telehealth  ]]>
  </title>
  <link> https://jacobzelko.com/05022022153220-evaluating-telehealth/index.html </link>
  <guid> https://jacobzelko.com/05022022153220-evaluating-telehealth/index.html </guid>
  <description>
    <![CDATA[  Short summary of the SPROUT Telehealth Evaluation and Measurement profile and how it is used  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Strategies for Evaluating Telehealth</h1>
<p><strong>Date:</strong> May 2 2022</p>
<p><strong>Summary:</strong> Short summary of the SPROUT Telehealth Evaluation and Measurement profile and how it is used</p>
<p><strong>Keywords:</strong> ##bibliography #telehealth #sprout #quality #ahrq #who #care #delivery #archive</p>
<h1>Bibliography</h1>
<p>J. Chuo, M. L. Macy, and S. A. Lorch, “Strategies for Evaluating Telehealth,” Pediatrics, vol. 146, no. 5, p. e20201781, Nov. 2020, doi: 10.1542/peds.2020-1781.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<ul>
<li><p>SPROUT Telehealth Evaluation and Measurement profile &#91;1&#93;</p>
</li>
</ul>
<pre><code class="language-julia">- Utilizes concepts from:
	- National Quality Forum
	- World Health Organization
	- Agency for Healthcare Research and Quality
- Reorganizes concepts into 4 clear measurement domains:
	- Health outcomes
	- Health delivery
	- Experience
	- Program implementation and key performance indicators 
- Meant to communicate value to:
	- Patients
	- Providers
	- Health systems
	- Payer</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Strategies for Evaluating Telehealth</em>. <a href="https://jacobzelko.com/05022022153220-evaluating-telehealth">https://jacobzelko.com/05022022153220-evaluating-telehealth</a>. May 2 2022.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; Macy, Michelle L., Dana Aronson Schinasi, David McSwain, and John Chuo, “SPROUT COVID-19 Measure Framework,” Mar. 24, 2020. https://research.musc.edu/-/sm/research/resources/sctr/f/sprout-telehealth-measurement-framework-for-covid-19.ashx?la&#61;en &#40;accessed May 02, 2022&#41;.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 02 May 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Telehealth for global emergencies: Implications for coronavirus disease 2019 &#40;COVID-19&#41;  ]]>
  </title>
  <link> https://jacobzelko.com/05022022171845-telehealth-global-emergencies/index.html </link>
  <guid> https://jacobzelko.com/05022022171845-telehealth-global-emergencies/index.html </guid>
  <description>
    <![CDATA[  A great summary of how telehealth interventions can be used both in the COVID-19 pandemic and in general  ]]>
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<h1>Telehealth for global emergencies: Implications for coronavirus disease 2019 &#40;COVID-19&#41;</h1>
<p><strong>Date:</strong> May 2 2022</p>
<p><strong>Summary:</strong> A great summary of how telehealth interventions can be used both in the COVID-19 pandemic and in general</p>
<p><strong>Keywords:</strong> ##bibliography #covid #telehealth #clinician #unwillingness #remittance #archive</p>
<h1>Bibliography</h1>
<p>A. C. Smith et al., “Telehealth for global emergencies: Implications for coronavirus disease 2019 &#40;COVID-19&#41;,” J Telemed Telecare, vol. 26, no. 5, pp. 309–313, Jun. 2020, doi: 10.1177/1357633X20916567.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Systems for Telehealth Interventions</li><li>Challenges to Telehealth</li><li>Opportunities for Telehealth</li><li>Concluding Thoughts</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>An overview of how telehealth interventions could and should be deployed during the COVID-19 pandemic. Really excellent read in my opinion that goes beyond just the COVID-19 pandemic but rather can be taken and applied elsewhere in the telehealth landscape. In particular, their conclusions were interesting as well as their discussion on clinician unwillingness.</p>
<h3 id="systems_for_telehealth_interventions">Systems for Telehealth Interventions</h3>
<ul>
<li><p>NATO created Multinational Telemedicine System in 2000</p>
</li>
<li><p>American Telemedicine Association Emergency and Response framework and infrastructure checklist &#91;1&#93;</p>
</li>
</ul>
<h3 id="challenges_to_telehealth">Challenges to Telehealth</h3>
<ul>
<li><p>Clinician unwillingness to use telehealth &#91;2&#93;</p>
</li>
</ul>
<pre><code class="language-julia">- Despite high funding in Australia, less than 1&#37; of specialist consultations were telehealth-based &#91;3&#93;
- Clinicians must see telehealth interventions as normal &#91;2&#93;</code></pre>
<ul>
<li><p>Renumeration is important but is not the only thing that leads to a successful telehealth intervention</p>
</li>
<li><p>Some care cannot be provided remotely</p>
</li>
</ul>
<pre><code class="language-julia">- Such as lab tests
- Some physical examinations</code></pre>
<h3 id="opportunities_for_telehealth">Opportunities for Telehealth</h3>
<ul>
<li><p>Advantages of telehealth</p>
</li>
</ul>
<pre><code class="language-julia">- Activate large number of care providers at once
- Enable better triage
- Provide care services when provider locations are unavailable
- Reduce person-to-person contact of disease transmission</code></pre>
<h3 id="concluding_thoughts">Concluding Thoughts</h3>
<p>How to realize a successful telehealth intervention alongside medical professionals according to this paper:</p>
<ul>
<li><p>Provide telehealth training</p>
</li>
<li><p>Create telehealth accreditation</p>
</li>
<li><p>Ensure proper funding</p>
</li>
<li><p>Structure care models to incorporate telehealth as a core foundation</p>
</li>
<li><p>Communicate to all stakeholders the best mode that they will receive</p>
</li>
<li><p>Incorporate routine evaluation and management of telehealth interventions</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Telehealth for global emergencies: Implications for coronavirus disease 2019 &#40;COVID-19&#41;</em>. <a href="https://jacobzelko.com/05022022171845-telehealth-global-emergencies">https://jacobzelko.com/05022022171845-telehealth-global-emergencies</a>. May 2 2022.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; C. R. Doarn and R. C. Merrell, “Telemedicine and e-health in disaster response,” vol. 20. Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA, pp. 605–606, 2014.</p>
<p>&#91;2&#93; V. A. Wade, J. A. Eliott, and J. E. Hiller, “Clinician acceptance is the key factor for sustainable telehealth services,” Qual. Health Res., vol. 24, no. 5, pp. 682–694, 2014.</p>
<p>&#91;3&#93; V. Wade, J. Soar, and L. Gray, “Uptake of telehealth services funded by Medicare in Australia,” Aust. Health Rev., vol. 38, no. 5, pp. 528–532, 2014.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 02 May 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Telehealth  ]]>
  </title>
  <link> https://jacobzelko.com/05022022155118-telehealth/index.html </link>
  <guid> https://jacobzelko.com/05022022155118-telehealth/index.html </guid>
  <description>
    <![CDATA[  Exhaustive landscape analysis looking into telehealth opportunities and challenges  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Telehealth</h1>
<p><strong>Date:</strong> May 2 2022</p>
<p><strong>Summary:</strong> Exhaustive landscape analysis looking into telehealth opportunities and challenges</p>
<p><strong>Keywords:</strong> ##bibliography #telehealth #cpt #quality #multistate #licensing #archive</p>
<h1>Bibliography</h1>
<p>R. Tuckson, M. Edmunds, and M. Hodgkins, “Telehealth,” New England Journal of Medicine, Oct. 2017. Accessed: Apr. 29, 2022. &#91;Online&#93;. Available: https://www.nejm.org/doi/pdf/10.1056/NEJMsr1503323?articleTools&#61;true</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Definitions</li><li>Challenges in Telehealth</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>A literature survey of telehealth insights.</p>
<h3 id="definitions">Definitions</h3>
<ul>
<li><p>Telehealth</p>
</li>
</ul>
<pre><code class="language-julia">- Interchangeably used with telemedicine
- Transferring medical information between sites via telecommunications to improve patient health &#91;1&#93;</code></pre>
<h3 id="challenges_in_telehealth">Challenges in Telehealth</h3>
<ul>
<li><p>Current Procedural Terminology Codes</p>
</li>
</ul>
<pre><code class="language-julia">- Get in the way currently of how individuals get paid for telehealth
- CPT Editorial panel working on this circa 2015</code></pre>
<ul>
<li><p>Interstate licensing and care provision</p>
</li>
</ul>
<pre><code class="language-julia">- Federation of State Medical Boards created the Interstate Medical Licensure Compact
	- Ease multistate licensing &#91;2&#93;
	- Not all states involved at the time of publication</code></pre>
<ul>
<li><p>Quality of Care</p>
</li>
</ul>
<pre><code class="language-julia">- National Quality Forum developing telehealth framework
	- Telehealth Framework To Support Measure Development 2016 - 2017
		- Developed to identify existing and potential telehealth metrics</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Telehealth</em>. <a href="https://jacobzelko.com/05022022155118-telehealth">https://jacobzelko.com/05022022155118-telehealth</a>. May 2 2022.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; “About telemedicine. Washington, DC: American Telemedicine Association.” https://www.americantelemed.org/main/about/&#37;20about-telemedicine/telemedicine-faqs &#40;accessed May 02, 2022&#41;.</p>
<p>&#91;2&#93; “Understanding the Medical Licensure Compact,” Federation of State Medical Boards, 2013. Accessed: May 02, 2022. &#91;Online&#93;. Available: http://www.fsmb.org/policy/advocacy-policy/interstate-model-proposed-medical-lic</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 02 May 2022 00:00:00 +0000</pubDate>  
  
  
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  <title>
    <![CDATA[  What Is Telehealth?  ]]>
  </title>
  <link> https://jacobzelko.com/05022022181455-telehealth-explained/index.html </link>
  <guid> https://jacobzelko.com/05022022181455-telehealth-explained/index.html </guid>
  <description>
    <![CDATA[  An outline addressing what is telehealth and core components  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>What Is Telehealth?</h1>
<p><strong>Date:</strong> May 2 2022</p>
<p><strong>Summary:</strong> An outline addressing what is telehealth and core components</p>
<p><strong>Keywords:</strong> ##outline #telehealth #background #emergency #framework #quality #care #acute #chronic #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Telehealth Background</li><li>Telehealth Frameworks and Systems</li><li>Telehealth Challenges</li><li>Telehealth Opportunities</li><li>Leading Successful Telehealth Interventions</li><li>Background</li><li>Telehealth Strategies or Frameworks</li><li>Challenges in Telehealth</li><li>Opportunities for Telehealth</li><li>Success in Telehealth Interventions</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="telehealth_background">Telehealth Background</h3>
<p>TODO: Make its own note</p>
<ul>
<li><p>&#91;Telehealth Background&#93;</p>
</li>
</ul>
<pre><code class="language-julia">- Telehealth Defined
- History of Telehealth
- Goals of Telehealth</code></pre>
<h3 id="telehealth_frameworks_and_systems">Telehealth Frameworks and Systems</h3>
<ul>
<li><p>Emergency Frameworks</p>
</li>
</ul>
<pre><code class="language-julia">&#91;NOTE&#93;&#40;https://jacobzelko.com/05022022153220-evaluating-telehealth&#41;
- &#91;SPROUT Telehealth Evaluation and Measurement profile&#93; &#91;1&#93;
	- Utilizes concepts from:
		- National Quality Forum
		- World Health Organization
		- Agency for Healthcare Research and Quality
	- Reorganizes concepts into 4 clear measurement domains:
		- Health outcomes
		- Health delivery
		- Experience
		- Program implementation and key performance indicators 
	- Meant to communicate value to:
		- Patients
		- Providers
		- Health systems
		- Payer
- &#91;NATO Multinational Telemedicine System&#93;
&#91;NOTE&#93;&#40;https://jacobzelko.com/05022022171845-telehealth-global-emergencies&#41;
- American Telemedicine Association Emergency and Response framework and infrastructure checklist &#91;2&#93;</code></pre>
<ul>
<li><p>Quality Assessment</p>
</li>
</ul>
<pre><code class="language-julia">- &#91;National Quality Federation&#93;</code></pre>
<h3 id="telehealth_challenges">Telehealth Challenges</h3>
<p>TODO: Make its own note</p>
<ul>
<li><p>Anthropological concerns</p>
</li>
</ul>
<pre><code class="language-julia">- &#91;Clinician Unwillingness&#93;
- &#91;Socialization&#93;</code></pre>
<ul>
<li><p>&#91;Quality of Care&#93;</p>
</li>
<li><p>&#91;Coding and Renumeration&#93;</p>
</li>
<li><p>&#91;Lack of Access&#93;</p>
</li>
</ul>
<h3 id="telehealth_opportunities">Telehealth Opportunities</h3>
<p>TODO: Make its own note</p>
<ul>
<li><p>&#91;Provider Benefits&#93;</p>
</li>
<li><p>Specific populations</p>
</li>
</ul>
<pre><code class="language-julia">- &#91;Chronic Conditions&#93;
- &#91;Acute Care&#93;
- &#91;Behavioral Health&#93;</code></pre>
<h3 id="leading_successful_telehealth_interventions">Leading Successful Telehealth Interventions</h3>
<ul>
<li><p>&#91;Keys for Successful Interventions&#93;</p>
</li>
</ul>
<p><a href="https://jacobzelko.com/05022022171845-telehealth-global-emergencies">NOTE</a> How to realize a successful telehealth intervention alongside medical professionals according to this paper:</p>
<ul>
<li><p>Provide telehealth training</p>
</li>
<li><p>Create telehealth accreditation</p>
</li>
<li><p>Ensure proper funding</p>
</li>
<li><p>Structure care models to incorporate telehealth as a core foundation</p>
</li>
<li><p>Communicate to all stakeholders the best mode that they will receive</p>
</li>
<li><p>Incorporate routine evaluation and management of telehealth interventions</p>
</li>
</ul>
<h3 id="background">Background</h3>
<p>Telehealth is the remote delivery of healthcare via telecommunication tools &#91;3&#93; and the transferral of medical information between sites via telecommunications to improve patient health. &#91;4&#93; The term telehealth is often used interchangeably with the term &quot;telemedicine&quot; as well &#91;4&#93;, &#91;5&#93;</p>
<p>Given this definition, one of the most obvious goals of telehealth is to improve patient health and care. &#91;3&#93; Although this is the obvious and most idealistic goal for telehealth, there are other subtle goals of telehealth. For example, it may be to ease the burden to provider care or to assist with triage &#91;6&#93; or to enable cost savings for health systems or payers. &#91;7&#93;</p>
<h3 id="telehealth_strategies_or_frameworks">Telehealth Strategies or Frameworks</h3>
<p><a href="https://jacobzelko.com/05022022153220-evaluating-telehealth">NOTE</a></p>
<ul>
<li><p>SPROUT Telehealth Evaluation and Measurement profile &#91;1&#93;</p>
</li>
</ul>
<pre><code class="language-julia">- Utilizes concepts from:
	- National Quality Forum
	- World Health Organization
	- Agency for Healthcare Research and Quality
- Reorganizes concepts into 4 clear measurement domains:
	- Health outcomes
	- Health delivery
	- Experience
	- Program implementation and key performance indicators 
- Meant to communicate value to:
	- Patients
	- Providers
	- Health systems
	- Payer</code></pre>
<h3 id="challenges_in_telehealth">Challenges in Telehealth</h3>
<p><a href="https://jacobzelko.com/05022022155118-telehealth">NOTE</a> &#91;4&#93;</p>
<ul>
<li><p>Current Procedural Terminology Codes</p>
</li>
</ul>
<pre><code class="language-julia">- Get in the way currently of how individuals get paid for telehealth
- CPT Editorial panel working on this circa 2015</code></pre>
<ul>
<li><p>Interstate licensing and care provision</p>
</li>
</ul>
<pre><code class="language-julia">- Federation of State Medical Boards created the Interstate Medical Licensure Compact
	- Ease multistate licensing &#91;8&#93;
	- Not all states involved at the time of publication</code></pre>
<ul>
<li><p>Quality of Care</p>
</li>
</ul>
<pre><code class="language-julia">- National Quality Forum developing telehealth framework
	- Telehealth Framework To Support Measure Development 2016 - 2017
		- Developed to identify existing and potential telehealth metrics</code></pre>
<p><a href="https://jacobzelko.com/05022022171845-telehealth-global-emergencies">NOTE</a></p>
<ul>
<li><p>Clinician unwillingness to use telehealth &#91;9&#93;</p>
</li>
</ul>
<pre><code class="language-julia">- Despite high funding in Australia, less than 1&#37; of specialist consultations were telehealth-based &#91;10&#93;
- Clinicians must see telehealth interventions as normal &#91;9&#93;</code></pre>
<ul>
<li><p>Renumeration is important but is not the only thing that leads to a successful telehealth intervention</p>
</li>
<li><p>Some care cannot be provided remotely</p>
</li>
</ul>
<pre><code class="language-julia">- Such as lab tests
- Some physical examinations</code></pre>
<p><a href="https://jacobzelko.com/05022022144808-state-of-telehealth">NOTE</a></p>
<ul>
<li><p>Reimbursement issues</p>
</li>
</ul>
<pre><code class="language-julia">- Eligible for clinical facilities where shortage of health professionals &#40;get citation&#41;</code></pre>
<ul>
<li><p>Lack of socialization</p>
</li>
</ul>
<pre><code class="language-julia">- The digital divide &#91;11&#93;
	- Difference of access to telehealth based on:
		- Geography 
		- Social factors
	- Worst for the elderly
		- Only 58&#37; of persons &gt; 65 years old use Internet &#91;12&#93;</code></pre>
<h3 id="opportunities_for_telehealth">Opportunities for Telehealth</h3>
<p><a href="https://jacobzelko.com/05022022171845-telehealth-global-emergencies">NOTE</a></p>
<ul>
<li><p>Advantages of telehealth</p>
</li>
</ul>
<pre><code class="language-julia">- Activate large number of care providers at once
- Enable better triage
- Provide care services when provider locations are unavailable
- Reduce person-to-person contact of disease transmission</code></pre>
<p><a href="https://jacobzelko.com/05022022144808-state-of-telehealth">NOTE</a></p>
<ul>
<li><p>Chronic condition patients</p>
</li>
</ul>
<pre><code class="language-julia">- Elderly Americans 
	- ~2 million elderly that are homebound &#91;13&#93;
	- Medical home will be patient&#39;s home for best patient-centered care &#91;14&#93;</code></pre>
<ul>
<li><p>Acute care patients</p>
</li>
</ul>
<pre><code class="language-julia">- Stroke &#91;15&#93;
- Pneumonia &#91;16&#93;</code></pre>
<h3 id="success_in_telehealth_interventions">Success in Telehealth Interventions</h3>
<p><a href="https://jacobzelko.com/05022022171845-telehealth-global-emergencies">NOTE</a> How to realize a successful telehealth intervention alongside medical professionals according to this paper:</p>
<ul>
<li><p>Provide telehealth training</p>
</li>
<li><p>Create telehealth accreditation</p>
</li>
<li><p>Ensure proper funding</p>
</li>
<li><p>Structure care models to incorporate telehealth as a core foundation</p>
</li>
<li><p>Communicate to all stakeholders the best mode that they will receive</p>
</li>
<li><p>Incorporate routine evaluation and management of telehealth interventions</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Is Telehealth?</em>. <a href="https://jacobzelko.com/05022022181455-telehealth-explained">https://jacobzelko.com/05022022181455-telehealth-explained</a>. May 2 2022.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; Macy, Michelle L., Dana Aronson Schinasi, David McSwain, and John Chuo, “SPROUT COVID-19 Measure Framework,” Mar. 24, 2020. https://research.musc.edu/-/sm/research/resources/sctr/f/sprout-telehealth-measurement-framework-for-covid-19.ashx?la&#61;en &#40;accessed May 02, 2022&#41;.</p>
<p>&#91;2&#93; C. R. Doarn and R. C. Merrell, “Telemedicine and e-health in disaster response,” vol. 20. Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA, pp. 605–606, 2014.</p>
<p>&#91;3&#93; E. R. Dorsey and E. J. Topol, “State of Telehealth,” N Engl J Med, vol. 375, no. 2, pp. 154–161, Jul. 2016, doi: 10.1056/NEJMra1601705.</p>
<p>&#91;4&#93; R. Tuckson, M. Edmunds, and M. Hodgkins, “Telehealth,” New England Journal of Medicine, Oct. 2017. Accessed: Apr. 29, 2022. &#91;Online&#93;. Available: https://www.nejm.org/doi/pdf/10.1056/NEJMsr1503323?articleTools&#61;true</p>
<p>&#91;5&#93; “About telemedicine. Washington, DC: American Telemedicine Association.” https://www.americantelemed.org/main/about/&#37;20about-telemedicine/telemedicine-faqs &#40;accessed May 02, 2022&#41;.</p>
<p>&#91;6&#93; A. C. Smith et al., “Telehealth for global emergencies: Implications for coronavirus disease 2019 &#40;COVID-19&#41;,” J Telemed Telecare, vol. 26, no. 5, pp. 309–313, Jun. 2020, doi: 10.1177/1357633X20916567.</p>
<p>&#91;7&#93; J. Chuo, M. L. Macy, and S. A. Lorch, “Strategies for Evaluating Telehealth,” Pediatrics, vol. 146, no. 5, p. e20201781, Nov. 2020, doi: 10.1542/peds.2020-1781.</p>
<p>&#91;8&#93; “Understanding the Medical Licensure Compact,” Federation of State Medical Boards, 2013. Accessed: May 02, 2022. &#91;Online&#93;. Available: http://www.fsmb.org/policy/advocacy-policy/interstate-model-proposed-medical-lic</p>
<p>&#91;9&#93; V. A. Wade, J. A. Eliott, and J. E. Hiller, “Clinician acceptance is the key factor for sustainable telehealth services,” Qual. Health Res., vol. 24, no. 5, pp. 682–694, 2014.</p>
<p>&#91;10&#93; V. Wade, J. Soar, and L. Gray, “Uptake of telehealth services funded by Medicare in Australia,” Aust. Health Rev., vol. 38, no. 5, pp. 528–532, 2014.</p>
<p>&#91;11&#93; P. Norris et al., Digital divide: Civic engagement, information poverty, and the Internet worldwide. Cambridge university press, 2001.</p>
<p>&#91;12&#93; A. Perrin and M. Duggan, “Americans’ internet access: 2000-2015,” 2015.</p>
<p>&#91;13&#93; K. A. Ornstein et al., “Epidemiology of the homebound population in the United States,” JAMA Intern. Med., vol. 175, no. 7, pp. 1180–1186, 2015.</p>
<p>&#91;14&#93; N. Herendeen and P. Deshpande, “Telemedicine and the patient-centered medical home,” Pediatr. Ann., vol. 43, no. 2, pp. e28–e32, 2014.</p>
<p>&#91;15&#93; A. Itrat et al., “Telemedicine in prehospital stroke evaluation and thrombolysis: Taking stroke treatment to the doorstep,” JAMA Neurol., vol. 73, no. 2, pp. 162–168, 2016.</p>
<p>&#91;16&#93; W. T. Summerfelt, S. Sulo, A. Robinson, D. Chess, and K. Catanzano, “Scalable hospital at home with virtual physician visits: Pilot study,” Am J Manag Care, vol. 21, no. 10, pp. 675–84, 2015.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 02 May 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  State of Telehealth  ]]>
  </title>
  <link> https://jacobzelko.com/05022022144808-state-of-telehealth/index.html </link>
  <guid> https://jacobzelko.com/05022022144808-state-of-telehealth/index.html </guid>
  <description>
    <![CDATA[  An overall summary and review of the state of telehealth based off literature  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>State of Telehealth</h1>
<p><strong>Date:</strong> May 2 2022</p>
<p><strong>Summary:</strong> An overall summary and review of the state of telehealth based off literature</p>
<p><strong>Keywords:</strong> ##bibliography #telehealth #care #digital #chronic #acute #conditions #wait #time #archive</p>
<h1>Bibliography</h1>
<p>E. R. Dorsey and E. J. Topol, “State of Telehealth,” N Engl J Med, vol. 375, no. 2, pp. 154–161, Jul. 2016, doi: 10.1056/NEJMra1601705.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Definitions</li><li>Goals of Telehealth</li><li>Current Issues with Care</li><li>Opportunities for Telehealth</li><li>Challenges to Telehealth</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>This was a systematic review of the state of telehealth using literature.</p>
<h3 id="definitions">Definitions</h3>
<ul>
<li><p>Telehealth - remote healthcare delivery via telecommunication tools with or without video</p>
</li>
</ul>
<h3 id="goals_of_telehealth">Goals of Telehealth</h3>
<ul>
<li><p>For patients:</p>
</li>
</ul>
<pre><code class="language-julia">- Increase access to care</code></pre>
<h3 id="current_issues_with_care">Current Issues with Care</h3>
<ul>
<li><p>Booking a 20 minute physician appointment takes an average of 20 days &#91;1&#93;</p>
</li>
<li><p>Traveling to an appointment and waiting often takes nearly 2 hours &#91;2&#93;</p>
</li>
</ul>
<h3 id="opportunities_for_telehealth">Opportunities for Telehealth</h3>
<ul>
<li><p>Chronic condition patients</p>
</li>
</ul>
<pre><code class="language-julia">- Elderly Americans 
	- ~2 million elderly that are homebound &#91;3&#93;
	- Medical home will be patient&#39;s home for best patient-centered care &#91;4&#93;</code></pre>
<ul>
<li><p>Acute care patients</p>
</li>
</ul>
<pre><code class="language-julia">- Stroke &#91;5&#93;
- Pneumonia &#91;6&#93;</code></pre>
<h3 id="challenges_to_telehealth">Challenges to Telehealth</h3>
<ul>
<li><p>Reimbursement issues</p>
</li>
</ul>
<pre><code class="language-julia">- Eligible for clinical facilities where shortage of health professionals &#40;get citation&#41;</code></pre>
<ul>
<li><p>Lack of socialization</p>
</li>
</ul>
<pre><code class="language-julia">- The digital divide &#91;7&#93;
	- Difference of access to telehealth based on:
		- Geography 
		- Social factors
	- Worst for the elderly
		- Only 58&#37; of persons &gt; 65 years old use Internet &#91;8&#93;</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>State of Telehealth</em>. <a href="https://jacobzelko.com/05022022144808-state-of-telehealth">https://jacobzelko.com/05022022144808-state-of-telehealth</a>. May 2 2022.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; Merritt Hawkins, “Physician Appointment Wait Times and Medicaid and Medicare Acceptance Rates,” Merritt Hawkins, 2014.</p>
<p>&#91;2&#93; K. N. Ray, A. V. Chari, J. Engberg, M. Bertolet, and A. Mehrotra, “Disparities in time spent seeking medical care in the United States,” JAMA Intern. Med., vol. 175, no. 12, pp. 1983–1986, 2015.</p>
<p>&#91;3&#93; K. A. Ornstein et al., “Epidemiology of the homebound population in the United States,” JAMA Intern. Med., vol. 175, no. 7, pp. 1180–1186, 2015.</p>
<p>&#91;4&#93; N. Herendeen and P. Deshpande, “Telemedicine and the patient-centered medical home,” Pediatr. Ann., vol. 43, no. 2, pp. e28–e32, 2014.</p>
<p>&#91;5&#93; A. Itrat et al., “Telemedicine in prehospital stroke evaluation and thrombolysis: Taking stroke treatment to the doorstep,” JAMA Neurol., vol. 73, no. 2, pp. 162–168, 2016.</p>
<p>&#91;6&#93; W. T. Summerfelt, S. Sulo, A. Robinson, D. Chess, and K. Catanzano, “Scalable hospital at home with virtual physician visits: Pilot study,” Am J Manag Care, vol. 21, no. 10, pp. 675–84, 2015.</p>
<p>&#91;7&#93; P. Norris et al., Digital divide: Civic engagement, information poverty, and the Internet worldwide. Cambridge university press, 2001.</p>
<p>&#91;8&#93; A. Perrin and M. Duggan, “Americans’ internet access: 2000-2015,” 2015.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 02 May 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  The Picture of Dorian Gray  ]]>
  </title>
  <link> https://jacobzelko.com/04202022021854-picture-dorian-gray/index.html </link>
  <guid> https://jacobzelko.com/04202022021854-picture-dorian-gray/index.html </guid>
  <description>
    <![CDATA[  Book review on the extreme hedonism, classist privilege, and complete moral collapse written about Dorian Gray  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>The Picture of Dorian Gray</h1>
<p><strong>Date:</strong> April 19 2022</p>
<p><strong>Summary:</strong> Book review on the extreme hedonism, classist privilege, and complete moral collapse written about Dorian Gray</p>
<p><strong>Keywords:</strong> ##summary #review #book #hedonism #privilege #corruption #morality #homosexuality #archive</p>
<h1>Bibliography</h1>
<p>O. Wilde, The Picture of Dorian Gray. OUP Oxford, 2006.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Introduction</li><li>Extreme Hedonism</li><li>Moral Collapse</li><li>On Homo-Eroticism</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="introduction">Introduction</h3>
<p>This was a rather odd but enjoyable book. Even though Wilde more depicted this book as the evil and banality of hedonism taken to the extreme, it was a rather nice reminder, for me personally, that it is acceptable to enjoy life. To seek and find new experiences and adventures is perfectly fine, but as Wilde pointed out, there is a limit.</p>
<h3 id="extreme_hedonism">Extreme Hedonism</h3>
<p>What I really enjoyed was the characterizations of Dorian and Lord Henry as these somewhat egalitarians with Dorian being the more novice and Henry being the more advanced. Dorian somewhat starts as a perfect blank template - an Adonis ready to be made Henry&#39;s Pygmalion. With Henry&#39;s influence, Dorian starts to shed his &quot;classist good manners&quot; and evolve into a full hedonist to embrace the darker desires unknown to those belonging to &quot;Dorian&#39;s kind of society&quot;.</p>
<p>As Henry points out to Dorian,</p>
<blockquote>
<p>&quot;The only way to get rid of a temptation is to yield to it. Resist it, and your soul grows sick with longing for the things it has forbidden to itself, with desire for what its monstrous laws have made monstrous and unlawful&quot;</p>
</blockquote>
<p>Which has a bit of truth to it. For sure we have all been tempted by that which we cannot have and perhaps we have given into a temptation. It certainly does give a bit of relief but then, we only want more. We are not bidden to ourselves to pursue that thing at all costs - if so, we would be no different than mere animals chasing every desire. Yet, that is exactly what Dorian believes after Henry explains his ideas to him.</p>
<h3 id="moral_collapse">Moral Collapse</h3>
<p>This begins to manifest in Dorian believing in his inherent superiority due to his charm and good looks that Henry and Basil praises him for. That perspective can be encapsulated in Basil saying, </p>
<blockquote>
<p>&quot;The ugly and the stupid have the best of it in this world.  They can sit quietly and gape at the play. If they know nothing of victory, they are at least spared the knowledge of defeat. They live as we all should live, undisturbed, indifferent, and without disquiet.&quot;</p>
</blockquote>
<p>Although Basil meant this more as a social commentary and not entirely a classist judgement, Henry followed up later with a similar but different sentiment of this same notion. Here, Henry instead says,</p>
<blockquote>
<p>&quot;Society, civilized society at least, is never very ready to believe anything to the detriment of those who are both rich and charming&#91;.&#93;&quot;</p>
</blockquote>
<p>Essentially, Henry&#39;s view is more of the kind saying, &quot;hey, you have more privilege and power than you think. Use it.&quot; In this case, he encourages the use of this privilege and power at the expense of all others. In Basil&#39;s comment, he more encourages Dorian to recognize his privilege and power but to be a wise steward of it. Instead, Dorian follows Henry&#39;s influence to gratify all of himself.</p>
<p>Before Dorian fully sheds his soul, after the suicide of Sibyl caused nearly directly by Dorian, there is a moment of tragic reflective introspection Dorian has:</p>
<blockquote>
<p>&quot;&#91;W&#93;hy is it that I cannot feel this tragedy as much as I want to?&quot;</p>
</blockquote>
<p>He says as he nearly begs Henry for an answer. Rather than this being a true moment for introspection, Henry instead just encourages Dorian to brush this off as an experience. Perhaps not the most happy of experience, but one nonetheless. Although Dorian knows he out to feel something, he instead allows Henry to salve his wounds.</p>
<p>In so doing, &quot;the life that was to make his soul,&quot; was avoided and any &quot;&#91;marring of&#93; his body&quot;, Dorian was spared. This enabled him to commit even worse terrors. The murder of Basil, the blackmailing of Alan, and the ruin of many of those around him, Dorian was now fully unchained to pursue it all. Dorian&#39;s moral collapse was well and truly complete.</p>
<h3 id="on_homo-eroticism">On Homo-Eroticism</h3>
<p>There was a strong undercurrent of homosexuality and homo-eroticism in this book. With Basil&#39;s unreuited love for Dorian, the homosexuality here was shown rather positively. Yet, with Dorian, this was portrayed as predatory to men and youth around him. A welcome change of the oft-condemning of homosexuals in Victorian literature but rather a sort of early value judgement on what was moral and immoral homosexual behavior for that time. Most likely this was a direct commentary from Wilde himself as a bisexual person but it wove into the narrative rather well.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>The Picture of Dorian Gray</em>. <a href="https://jacobzelko.com/04202022021854-picture-dorian-gray">https://jacobzelko.com/04202022021854-picture-dorian-gray</a>. April 19 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 19 Apr 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  The Open Knowledge Model  ]]>
  </title>
  <link> https://jacobzelko.com/04172022033744-open-knowledge-standard/index.html </link>
  <guid> https://jacobzelko.com/04172022033744-open-knowledge-standard/index.html </guid>
  <description>
    <![CDATA[  A working proposal on a standard knowledge format for taking notes  ]]>
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<h1>The Open Knowledge Model</h1>
<p><strong>Date:</strong> April 16 2022</p>
<p><strong>Summary:</strong> A working proposal on a standard knowledge format for taking notes</p>
<p><strong>Keywords:</strong> #open #knowledge #standard ##summary #format #blog #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Model Components</li><li>Digressions and Recommendations for Model<ol><li>Title Block</li><li>Bibliography Block</li><li>Notes</li><li>References</li></ol></li><li>Implementation Examples</li><li>Tools for Working with Model</li><li>Conclusion</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>Knowledge is one of the most nebulous ideas known to mankind since nearly the beginning of time. What may be knowledge to one person may be useless noise to another - this encapsulates the difficulty in defining knowledge. As a result of its many possible meanings, I put forth a rather opinionated proposal for what I term the &quot;Open Knowledge Model&quot;.</p>
<p>The Open Knowledge Model is a standard that defines not how to maintain knowledge in what are typically coined &quot;knowledge management systems&quot;. Instead, its focus is on how to structure information that goes directly into such systems. It is fully compatible with the <a href="https://www.iso.org/standard/68683.html">ISO 30401</a> standard.</p>
<p>There are many different knowledge management systems available to someone – from a pen and pencil to various software offerings. Each of these offerings are very unique and accordingly offer benefits and cons. This model remains independent of any such offering but instead prescribes a model to structure information in any of the offerings one chooses to pursue.</p>
<h3 id="model_components">Model Components</h3>
<p>The model is composed of the following sections:</p>
<ul>
<li><p><strong>Title Block</strong> - this is a unique block that begins with the name of the note followed by three required subcomponents:</p>
</li>
</ul>
<pre><code class="language-julia">- **Date** - the date the note was created
- **Summary** - a brief, single sentence summary of what this note is about
- **Keywords** - keywords that can be used to find or associated with the content of this note</code></pre>
<ul>
<li><p><strong>Bibliography Block</strong> - this contains the bibliographic information that is associated with the specific note</p>
</li>
<li><p><strong>Notes</strong> - where one&#39;s notes go on the note subject in whatever format one so chooses</p>
</li>
<li><p><strong>References</strong> - list of references used in the note</p>
</li>
</ul>
<p>And that is the core requirement of the model.  What follows are a few digressions on this model. </p>
<h3 id="digressions_and_recommendations_for_model">Digressions and Recommendations for Model</h3>
<h4 id="title_block">Title Block</h4>
<p>It is recommended that for <strong>Date</strong>, one chooses a consistent convention for how one will record the date across their knowledge base using this model.  In practice, there can be as many <strong>Keywords</strong> as one chooses, but it is often better to be more concise in what you choose as words.</p>
<h4 id="bibliography_block">Bibliography Block</h4>
<p>It can be possible that there isn&#39;t one bibliography associated with this not or none at all.  In those situations, it makes sense to perhaps write something like: &quot;Not Available&quot;.</p>
<h4 id="notes">Notes</h4>
<p>This is the most critical piece to any note.  One can structure and write their notes in any way they please here.  Include images, diagrams, code snippets – anything your knowledge management system supports. The model imposes no specific structure here – implementations may differ.</p>
<h4 id="references">References</h4>
<p>It is recommended to never write down the references section manually. Instead, offload this to a third party reference manager or another tool that could generate this information from a given note. </p>
<h3 id="implementation_examples">Implementation Examples</h3>
<p>To give an example of implementations, here are some examples of implementations:</p>
<ul>
<li><p><a href="https://jacobzelko.com/08032021134232-notes-template">Markdown Implementation</a></p>
</li>
</ul>
<h3 id="tools_for_working_with_model">Tools for Working with Model</h3>
<p>Here are a list of some tools that have emerged to work with the Open Knowledge Model: </p>
<ul>
<li><p><a href="https://github.com/TheCedarPrince/NoteMate">NoteMate.jl</a> - a companion for working with a knowledge management system that adheres to the Open Knowledge Model.</p>
</li>
</ul>
<p>Written in Julia and offers parsing from Markdown notes to other target formats.</p>
<h3 id="conclusion">Conclusion</h3>
<p>This standard is an active work in progress and is the product of years of experimentation.  If you find problems with this model or believe it too restrictive or unwise, please comment in the discussion or reach out to me. My hope is that this standard will co-evolve with new tools and increase the utility of any person&#39;s knowledge management system.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>The Open Knowledge Model</em>. <a href="https://jacobzelko.com/04172022033744-open-knowledge-standard">https://jacobzelko.com/04172022033744-open-knowledge-standard</a>. April 16 2022.</p>
<h2 id="references__2">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 16 Apr 2022 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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    <![CDATA[  What Is Mansplaining?  ]]>
  </title>
  <link> https://jacobzelko.com/04162022021058-mansplaining/index.html </link>
  <guid> https://jacobzelko.com/04162022021058-mansplaining/index.html </guid>
  <description>
    <![CDATA[  An overview on the concept of mansplaining  ]]>
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<h1>What Is Mansplaining?</h1>
<p><strong>Date:</strong> April 15 2022</p>
<p><strong>Summary:</strong> An overview on the concept of mansplaining</p>
<p><strong>Keywords:</strong> ##summary #mansplaining #gender #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>One such sharply divisive word is the verb &quot;mansplain,&quot; coined by Rebecca Solnit</p>
<p>Mansplaining is not just when a man explains something to a woman in a patronizing way. It is when they do it despite there being clear signs that the woman already knows it and possibly knows it better than they do, which fits into a pattern that many women experience across their whole lives, of society generally assuming that men are more knowledgeable than women</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Is Mansplaining?</em>. <a href="https://jacobzelko.com/04162022021058-mansplaining">https://jacobzelko.com/04162022021058-mansplaining</a>. April 15 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 15 Apr 2022 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Body Mass Index &#40;BMI&#41;  ]]>
  </title>
  <link> https://jacobzelko.com/04162022022947-body-mass-index/index.html </link>
  <guid> https://jacobzelko.com/04162022022947-body-mass-index/index.html </guid>
  <description>
    <![CDATA[  An overview of the body mass index and some of the concern surrounding it.  ]]>
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    <![CDATA[  
<h1>Body Mass Index &#40;BMI&#41;</h1>
<p><strong>Date:</strong> April 15 2022</p>
<p><strong>Summary:</strong> An overview of the body mass index and some of the concern surrounding it.</p>
<p><strong>Keywords:</strong> ##summary #biomarker #body #mass #index #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>Mentioned in the note <a href="https://jacobzelko.com/04162022002725-mathematician-gender-rethinking">X &#43; Y : A Mathematician’s Manifesto for Rethinking Gender</a></p>
<p>One contentious example is body mass index, or BMI. The formula for BMI uses height and weight, so the relationship between height, weight, and BMI is defined and fixed. However, BMI is then taken as a proxy for body fat, which is then in turn taken as a proxy for healthiness, even though those relationships are not fixed or precisely definable</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Body Mass Index &#40;BMI&#41;</em>. <a href="https://jacobzelko.com/04162022022947-body-mass-index">https://jacobzelko.com/04162022022947-body-mass-index</a>. April 15 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 15 Apr 2022 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  X &#43; Y : A Mathematician’s Manifesto for Rethinking Gender  ]]>
  </title>
  <link> https://jacobzelko.com/04162022002725-mathematician-gender-rethinking/index.html </link>
  <guid> https://jacobzelko.com/04162022002725-mathematician-gender-rethinking/index.html </guid>
  <description>
    <![CDATA[  Book review on an approach of using category theory to decouple and discuss characteristics of gender without conflating the two - great read&#33;  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>X &#43; Y : A Mathematician’s Manifesto for Rethinking Gender</h1>
<p><strong>Date:</strong> April 15 2022</p>
<p><strong>Summary:</strong> Book review on an approach of using category theory to decouple and discuss characteristics of gender without conflating the two - great read&#33;</p>
<p><strong>Keywords:</strong> ##summary ##blog #review #book #gender #ingressive #congressive #category #theory #archive</p>
<h1>Bibliography</h1>
<p>E. Cheng, X &#43; Y: A Mathematician’s Manifesto for Rethinking Gender. Basic Books, 2020.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Introduction</li><li>Category Theory as Tool for Thinking on Gender</li><li>Congressive versus Ingressive Thinking</li><li>Conclusion</li><li>Final Thoughts</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="introduction">Introduction</h3>
<p>Eugenia Cheng takes a nuanced approach to the discussion around gender. As she references, some feminists&#39; battle cry is the phrase, &quot;Smash the patriarchy&#33;&quot;. In Cheng&#39;s idea of feminism, she instead looks for language that is less divisive and more inclusive encompassed in her saying, &quot;Let’s transform our world into a more congressively led future.&quot;</p>
<h3 id="category_theory_as_tool_for_thinking_on_gender">Category Theory as Tool for Thinking on Gender</h3>
<p>With this approach, she launches into her core contribution to the discussion on gender which is introducing the mathematics of <a href="https://jacobzelko.com/11082021041951-category-theory-scientists">category theory</a> to decouple historical characteristics associated genders from the genders themselves. Cheng argues that this is a better approach to take in gender discussions to think more deeply about traits or characteristics in isolation rather than rooted in gender. You can then critique a characteristic or trait rather than a whole group of people.</p>
<p>Rather than being a book on mathematics and gender, category theory is used more as a mental model or framework to enact this decoupling. This works well as category theory fundamentally concerns itself about relationships. In her opinion, category theory enables one to think more clearly about about characteristics with a great degree of flexibility.</p>
<h3 id="congressive_versus_ingressive_thinking">Congressive versus Ingressive Thinking</h3>
<p>Cheng introduced two crucial words into her argument which can describe concepts, behaviors or people: &quot;congressive&quot; and &quot;ingressive&quot;. This is how she defined these terms summarized below:</p>
<ul>
<li><p><strong>Ingressive</strong> - putting oneself over society, imposing on others frequently, far more individualistic than collaborative, less flexible thinking</p>
</li>
<li><p><strong>Congressive</strong> - society over self, prioritizing others, highly collective and community-focused, holistic thought patterns</p>
</li>
</ul>
<p>In this way, the onus of characteristics is moved from tightly coupled gender stereotypes to decoupled conversations on those characteristics in isolation. However, this isn&#39;t entirely the case all the time as most concepts, behaviors, or people have some tendencies to ingressive behavior and some to congressive behavior. As Cheng herself posits, &quot;When gender is relevant, we need to consider it. When character is relevant, we need to consider it.  But we shouldn&#39;t assume they are linked.&quot;</p>
<h3 id="conclusion">Conclusion</h3>
<p>She concludes in her book how she doesn&#39;t want, &quot;to see &quot;masculine&quot; and &quot;feminine&quot; character traits evaluated against each other &#91;...&#93; so only one side can win,&quot; in discussions around gender. She emphasizes how she doesn&#39;t want women having to act like men to succeed. Rather, she believes that there are not only other ways to make contributions to society but rather that there are other traditional forms of success.</p>
<h3 id="final_thoughts">Final Thoughts</h3>
<p>Overall, I really enjoyed this book&#33; I feel like her point was made pretty early on and I appreciated some of the examples. However, as I am acquainted with category theory as well as having read some material on gender studies in the past, I personally was able to skip through various parts.</p>
<p>I think her notion of decoupling is immensely important however I am not sure on her terminology of &quot;ingressive&quot; and &quot;congressive&quot;. Whenever anyone overloads terms with additional definitions, it makes me nervous that confusion in discussion can occur. However, since these are not commonly used terms, at least in my experience, it makes me think this may not be as big an issue.</p>
<p>Finally, it has made me think about where this method of decoupling can be used rigorously. In particular, I am curious about race and concepts such as the <a href="https://jacobzelko.com/07112020161337-social-determinants-health">social determinants of health</a> and how category theoretic approaches can be brought there. I think Cheng even teases readers with this idea so I am curious to see if she revisits the ideas someday:</p>
<p>&quot;The idea of a temporary abstraction also takes into account the thorny issue of intersectionality, and the need to take other forms of power imbalance into account besides those governed by gender, for example race, wealth, sexual orientation, and so on.&quot;</p>
<p>Overall, good read&#33;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>X &#43; Y : A Mathematician’s Manifesto for Rethinking Gender</em>. <a href="https://jacobzelko.com/04162022002725-mathematician-gender-rethinking">https://jacobzelko.com/04162022002725-mathematician-gender-rethinking</a>. April 15 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 15 Apr 2022 00:00:00 +0000</pubDate>  
  
  
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  <title>
    <![CDATA[  Rejected Claims  ]]>
  </title>
  <link> https://jacobzelko.com/04112022133137-rejected-claims/index.html </link>
  <guid> https://jacobzelko.com/04112022133137-rejected-claims/index.html </guid>
  <description>
    <![CDATA[  An overview of what rejected claims are  ]]>
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<h1>Rejected Claims</h1>
<p><strong>Date:</strong> April 11 2022</p>
<p><strong>Summary:</strong> An overview of what rejected claims are</p>
<p><strong>Keywords:</strong> #medical #claims #rejected #summary #error #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>A rejected claim contained errors that prevented the claim from even being processed by a payer. &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Rejected Claims</em>. <a href="https://jacobzelko.com/04112022133137-rejected-claims">https://jacobzelko.com/04112022133137-rejected-claims</a>. April 11 2022.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; Jonathan Gerber, “What Is The Difference Between Denied Claims And Rejected Claims?” https://www.medcorinc.com/what-is-the-difference-between-denied-claims-and-rejected-claims/ &#40;accessed Apr. 11, 2022&#41;.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 11 Apr 2022 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  Denied Claims  ]]>
  </title>
  <link> https://jacobzelko.com/04112022133109-denied-claims/index.html </link>
  <guid> https://jacobzelko.com/04112022133109-denied-claims/index.html </guid>
  <description>
    <![CDATA[  An overview of what denied claims are  ]]>
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    <![CDATA[  
<h1>Denied Claims</h1>
<p><strong>Date:</strong> April 11 2022</p>
<p><strong>Summary:</strong> An overview of what denied claims are</p>
<p><strong>Keywords:</strong> ##summary #claims #denied #medical #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>Denied claims are medical claims that an insurer determined they did not need to pay after processing. The denial can be for many reasons ranging from clerical errors in the coding or submission process to breaches of the patient-payer contract. These denied claims are sent back to the biller with an Explanation of Benefits or Electronic Remittance Advice which both explain why the claim was denied and how to potentially appeal the denial. &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Denied Claims</em>. <a href="https://jacobzelko.com/04112022133109-denied-claims">https://jacobzelko.com/04112022133109-denied-claims</a>. April 11 2022.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; Jonathan Gerber, “What Is The Difference Between Denied Claims And Rejected Claims?” https://www.medcorinc.com/what-is-the-difference-between-denied-claims-and-rejected-claims/ &#40;accessed Apr. 11, 2022&#41;.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 11 Apr 2022 00:00:00 +0000</pubDate>  
  
  
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    <![CDATA[  Lord of the Flies  ]]>
  </title>
  <link> https://jacobzelko.com/04112022004224-lord-of-flies/index.html </link>
  <guid> https://jacobzelko.com/04112022004224-lord-of-flies/index.html </guid>
  <description>
    <![CDATA[  A review of the book as well as thoughts on why I did not enjoy it  ]]>
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<h1>Lord of the Flies</h1>
<p><strong>Date:</strong> April 10 2022</p>
<p><strong>Summary:</strong> A review of the book as well as thoughts on why I did not enjoy it</p>
<p><strong>Keywords:</strong> ##summary ##book #survival #social #critique #archive</p>
<h1>Bibliography</h1>
<p>W. Golding, Lord of the flies: Casebook edition. Penguin, 1987.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>I did not enjoy this book much at all. When I had finished reading it, I was left thinking to myself, &quot;that was it? This is the book so many put on a pedestal?&quot; I very much expected more for a supposed critique on the banality of man. Instead, it read a very contrived scenario that just did not feel much like life. To explain my thoughts, here are some of my findings about the book after researching the author:</p>
<ol>
<li><p>It has been well documented that the author used his students in experiments to test human behavior.</p>
</li>
</ol>
<p>These experiments were very contrived and did were very haphazardly done &#91;1&#93;</p>
<ol start="2">
<li><p>This book was written as a parody of a different book called Coral Island where kids were lost on an island and made a utopia.</p>
</li>
</ol>
<p>The author wrote this as if to say this is what really happens with kids on an island.&#91;1&#93;</p>
<ol start="3">
<li><p>The book is highly idiosyncratic to British life and schooling.</p>
</li>
</ol>
<p>Just these three points made me think the book was awful. As the book was written to talk about how children, left to their own devices, would create society and destroy it,it is oddly moralistic. You are put in a position to watch the unfurling of this horrific story take place from an objective standpoint. But based on point one, you are not all that objective.</p>
<p>Point two I feel is not talked about a lot but should be more. If this book is just parody then why is it treated as novel and even realistic at all? Coral Island was contrived just as Lord of the Flies is now,just in the opposite direction. Whether man falls to utopia or dystopia is not a binary choice but a sliding scale of morality That is very dependent on many factors.</p>
<p>Also it should not be forgotten that this book is a critique on British schooling as well. That context alone should remind that this book does not parody much of life at all but a very small cross section of it. How much can be taken from British life to other modes of living is most likely minimal.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Lord of the Flies</em>. <a href="https://jacobzelko.com/04112022004224-lord-of-flies">https://jacobzelko.com/04112022004224-lord-of-flies</a>. April 10 2022.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; J. Carey, William golding: The man who wrote lord of the flies. Faber &amp; Faber, 2012.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 10 Apr 2022 00:00:00 +0000</pubDate>  
  
  
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    <![CDATA[  Othello  ]]>
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  <link> https://jacobzelko.com/04102022034503-othello/index.html </link>
  <guid> https://jacobzelko.com/04102022034503-othello/index.html </guid>
  <description>
    <![CDATA[  A review of the book Othello and some thoughts on the central conflict  ]]>
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<h1>Othello</h1>
<p><strong>Date:</strong> April 9 2022</p>
<p><strong>Summary:</strong> A review of the book Othello and some thoughts on the central conflict</p>
<p><strong>Keywords:</strong> ##summary ##book #play #tragedy #racism #boredeom ##blog #archive</p>
<h1>Bibliography</h1>
<p>W. Shakespeare and others, &quot;Othello:&#91;1622&#93;,&quot; Oxford Text Archive Core Collection, 1991.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Racism and Deconstruction of the Noble Savage</li><li>Manipulation as Enigmatic Entertainment</li><li>Transcendental Love</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="racism_and_deconstruction_of_the_noble_savage">Racism and Deconstruction of the Noble Savage</h3>
<p>It is surprisingly progressive in some ways I found - even by today&#39;s standards which was interesting. The racist overtones in the book were very much in your face but with the treatment of Othello, I did not find it similar to the idea of the &quot;noble savage&quot; literary idea but rather much different. Instead, it felt like Othello was treated by all other accounts either an equal or due to his experience, exempt from the racial overtures his peers had towards him generally.</p>
<h3 id="manipulation_as_enigmatic_entertainment">Manipulation as Enigmatic Entertainment</h3>
<p>What I enjoyed the most was this could be also retitled: &quot;Gaslighting: the Book&quot; with how the villain Iago manipulated everyone in the book. It was breathtaking the amount of animus Iago had to everyone and what stuck with me the most at the end when the character was finally caught in his schemes was that Iago didn&#39;t really have a reason. Even when Iago himself was trying to justify himself, it was very shaky at best and he knew it. I think he was just a character who knew he could be good at being very bad and enjoyed the power trip it gave him.</p>
<p>I quite liked the fact that he did not have a real motive. It drove home the pettiness of him but is not unrealistic. To me, he reminded me of a man who was very bored and his most fun was in controlling the lives of others in some way even if it meant his ruin. It has been said that the most dangerous people to watch for are those who have nothing to lose when you have every thing to lose. The think this is a very apt description of Iago as a man who has nothing but is happy to see some one lose everything.</p>
<h3 id="transcendental_love">Transcendental Love</h3>
<p>Finally, what has stuck with me is how much Othello and Desdemona were in love with each other. It was typical of Shakespeare to write these deep romances where the bonds between the lovers could transcend the times that the people were from. It is both saddening and interesting that the situation described here is not too dissimilar to the world we live in still. In the start of the book, you can see the bigotry at full display in the father of Desdemona which is eerily like modern discussions.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Othello</em>. <a href="https://jacobzelko.com/04102022034503-othello">https://jacobzelko.com/04102022034503-othello</a>. April 9 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 09 Apr 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Overview of Database Schemas  ]]>
  </title>
  <link> https://jacobzelko.com/02192022220548-database-schemas/index.html </link>
  <guid> https://jacobzelko.com/02192022220548-database-schemas/index.html </guid>
  <description>
    <![CDATA[  A brief overview on what database schemas are  ]]>
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<h1>Overview of Database Schemas</h1>
<p><strong>Date:</strong> February 19 2022</p>
<p><strong>Summary:</strong> A brief overview on what database schemas are</p>
<p><strong>Keywords:</strong> #archive #database #schema</p>
<h1>Bibliography</h1>
<p>Database schema, Wikipedia. Dec. 19, 2021. Accessed: Feb. 19, 2022. &#91;Online&#93;. Available: https://en.wikipedia.org/w/index.php?title&#61;Database_schema&amp;oldid&#61;1061124043</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>A &quot;schema&quot; describes the way data is structured to define how a database is constructed. </p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Overview of Database Schemas</em>. <a href="https://jacobzelko.com/02192022220548-database-schemas">https://jacobzelko.com/02192022220548-database-schemas</a>. February 19 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 19 Feb 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  History of the RDF  ]]>
  </title>
  <link> https://jacobzelko.com/02182022164256-rdf-history/index.html </link>
  <guid> https://jacobzelko.com/02182022164256-rdf-history/index.html </guid>
  <description>
    <![CDATA[  Very brief history of the RDF  ]]>
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    <![CDATA[  
<h1>History of the RDF</h1>
<p><strong>Date:</strong> February 18 2022</p>
<p><strong>Summary:</strong> Very brief history of the RDF</p>
<p><strong>Keywords:</strong> #rdf #history #w3c #metadata #archive</p>
<h1>Bibliography</h1>
<p>W3C, &quot;RDF 1.1 Concepts and Abstract Syntax.&quot; https://www.w3.org/TR/rdf11-concepts/ &#40;accessed Feb. 18, 2022&#41;.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>The Resource Description Framework &#40;RDF&#41; is a family of specifications created by the World Wide Web Consortium &#40;W3C&#41; and formally adopted by W3C in 1999. The RDF specification was originally created by the as a data model for managing and storing metadata found on the internet. In recent years, it has become a general framework for web resource tooling and provides an abstract model that can be used in multiple serialization formats.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>History of the RDF</em>. <a href="https://jacobzelko.com/02182022164256-rdf-history">https://jacobzelko.com/02182022164256-rdf-history</a>. February 18 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Fri, 18 Feb 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  RDF Data Storage Formats  ]]>
  </title>
  <link> https://jacobzelko.com/02182022172731-rdf-file-formats/index.html </link>
  <guid> https://jacobzelko.com/02182022172731-rdf-file-formats/index.html </guid>
  <description>
    <![CDATA[  Types of data storage formats available for RDF  ]]>
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    <![CDATA[  
<h1>RDF Data Storage Formats</h1>
<p><strong>Date:</strong> February 18 2022</p>
<p><strong>Summary:</strong> Types of data storage formats available for RDF</p>
<p><strong>Keywords:</strong> #rdf #formats #data #turtle #xml #storage #archive</p>
<h1>Bibliography</h1>
<p>W3C, &quot;RDF 1.1 Concepts and Abstract Syntax.&quot; https://www.w3.org/TR/rdf11-concepts/ &#40;accessed Feb. 18, 2022&#41;.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>What Is the Turtle Format?<ol><li>What Is an Example of the Turtle Format?</li></ol></li><li>What Is the XML Format?<ol><li>What Is an Example of the XML Format?</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>There are many different file storage formats for RDF reified data.</p>
<h3 id="what_is_the_turtle_format">What Is the Turtle Format?</h3>
<p>The Turtle format &#40;file extension <code>.ttl</code>&#41; is one example of a storage format. It takes the following form:</p>
<pre><code class="language-julia">&lt;Subject&gt; &lt;Predicate&gt; &lt;Resource&gt; .</code></pre>
<h4 id="what_is_an_example_of_the_turtle_format">What Is an Example of the Turtle Format?</h4>
<p>If I have the statement:</p>
<blockquote>
<p>The sky is colored blue.</p>
</blockquote>
<p>That can be written in the form:</p>
<pre><code class="language-julia">&lt;sky&gt; &lt;is colored&gt; &lt;blue&gt; .</code></pre>
<h3 id="what_is_the_xml_format">What Is the XML Format?</h3>
<p>Another example is utilizing the popular XML format for representing RDF data.</p>
<h4 id="what_is_an_example_of_the_xml_format">What Is an Example of the XML Format?</h4>
<p>If I have the statement:</p>
<blockquote>
<p>The sky is colored blue.</p>
</blockquote>
<p>That can be written in the form:</p>
<pre><code class="language-xml">&lt;rdf:RDF
    xmlns:rdf&#61;&quot;http://www.w3.org/1999/02/22-rdf-syntax-ns#&quot;
    xmlns:j.0&#61;&quot;http://some.fakeurl.com/fake/is &quot; &gt; 
  &lt;rdf:Description rdf:about&#61;&quot;sky&quot;&gt;
    &lt;j.0:colored rdf:resource&#61;&quot;blue&quot;/&gt;
  &lt;/rdf:Description&gt;
&lt;/rdf:RDF&gt;</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>RDF Data Storage Formats</em>. <a href="https://jacobzelko.com/02182022172731-rdf-file-formats">https://jacobzelko.com/02182022172731-rdf-file-formats</a>. February 18 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 18 Feb 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  How To Imagine an RDF as an ACSet  ]]>
  </title>
  <link> https://jacobzelko.com/02182022190950-rdf-acset-representation/index.html </link>
  <guid> https://jacobzelko.com/02182022190950-rdf-acset-representation/index.html </guid>
  <description>
    <![CDATA[  How RDFs can be conceptualized as an ACSet  ]]>
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    <![CDATA[  
<h1>How To Imagine an RDF as an ACSet</h1>
<p><strong>Date:</strong> February 18 2022</p>
<p><strong>Summary:</strong> How RDFs can be conceptualized as an ACSet</p>
<p><strong>Keywords:</strong> #rdf #acset #graph #triple #archive</p>
<h1>Bibliography</h1>
<p>W3C, &quot;RDF 1.1 Concepts and Abstract Syntax.&quot; https://www.w3.org/TR/rdf11-concepts/ &#40;accessed Feb. 18, 2022&#41;.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>RDFs can be also formulated as ACSets. To show how this is possible, let&#39;s walk through an example on how this happens:</p>
<p>The RDF triples &quot;The sky is colored blue.&quot;, &quot;Grass is colored green.&quot;, and &quot;The ocean is colored blue&quot; can all be represented as a Directed Multigraph \(G\).</p>
<pre><code class="language-mermaid">graph LRsky --is colored--&gt; blue
ocean --is colored--&gt; blue
grass --is colored--&gt; green</code></pre>
\[
G
\]
<p>can be thought of as an instance implementation of an ACSet representation of the RDF format. The ACSet schema defined for this family of RDFs can be defined at a higher level abstraction as follows:</p>
<pre><code class="language-mermaid">Thing --is colored--&gt; Color</code></pre>
<p><em>Thing</em> represents a generalized Subject Object, <em>Color</em> represents a generalized Resource Object, and <em>is colored</em> defines the Predicate morphism for this Category of RDFs.</p>
<p>TODO: Add connection to acsets note</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>How To Imagine an RDF as an ACSet</em>. <a href="https://jacobzelko.com/02182022190950-rdf-acset-representation">https://jacobzelko.com/02182022190950-rdf-acset-representation</a>. February 18 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 18 Feb 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Overview of the Resource Description Framework &#40;RDF&#41;  ]]>
  </title>
  <link> https://jacobzelko.com/02182022165447-rdf-overview/index.html </link>
  <guid> https://jacobzelko.com/02182022165447-rdf-overview/index.html </guid>
  <description>
    <![CDATA[  An overview of the RDF and how it works  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Overview of the Resource Description Framework &#40;RDF&#41;</h1>
<p><strong>Date:</strong> February 18 2022</p>
<p><strong>Summary:</strong> An overview of the RDF and how it works</p>
<p><strong>Keywords:</strong> #rdf #overview #triplet #graph #framework #archive</p>
<h1>Bibliography</h1>
<p>W3C, &quot;RDF 1.1 Concepts and Abstract Syntax.&quot; https://www.w3.org/TR/rdf11-concepts/ &#40;accessed Feb. 18, 2022&#41;.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>What Are RDF Triplets?</li><li>What Are Examples of RDF Triplets?</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>The Resource Description Framework &#40;RDF&#41; is a family of specifications created by the World Wide Web Consortium &#40;W3C&#41; and formally adopted by W3C in 1999. Data mapped into the RDF form into triplets called <em>RDF statements</em> &#40;also known as Semantic Triplets&#41;.</p>
<h3 id="what_are_rdf_triplets">What Are RDF Triplets?</h3>
<p>These triplets, or statements, are comprised of three components called the <em>subject</em>, the <em>predicate</em>, and the <em>object</em>. In summary, these components are described as:</p>
<ul>
<li><p><strong>Subject</strong> - this denotes a resource where anything can be a resource.</p>
</li>
</ul>
<p>It is synonymous with the idea of an entity in other data models.</p>
<ul>
<li><p><strong>Predicate</strong> - traits or aspects of a defined resource and expresses the relationship between a <strong>Subject</strong> or a given <strong>Object</strong>.</p>
</li>
<li><p><strong>Object</strong> - the target of the predicate and is similar to a resource in that anything can be an <strong>Object</strong>.</p>
</li>
</ul>
<p>What the RDF statement compactly communicates is that there holds some relationship, indicated by the predicate, between the <strong>Subject</strong> and <strong>Object</strong>.</p>
<h3 id="what_are_examples_of_rdf_triplets">What Are Examples of RDF Triplets?</h3>
<p>Example RDF statements are:</p>
<blockquote>
<ul>
<li><p>The sky is colored blue.</p>
</li>
</ul>
</blockquote>
<blockquote>
<ul>
<li><p>Grass is colored green.</p>
</li>
</ul>
</blockquote>
<blockquote>
<ul>
<li><p>The ocean is colored blue.</p>
</li>
</ul>
</blockquote>
<p>Taking the statement &quot;The sky is colored blue.&quot; the <strong>Subject</strong> is the phrase &quot;sky&quot;, the <strong>Predicate</strong> is the verb phrase &quot;is colored&quot;, and the <strong>Object</strong> is the final phrase, &quot;blue&quot;. Moving forward from this example, it may be useful to think of the RDF statement as a labeled directed multigraph where components of the statement are typically broken down and stored in Relational Database Management Systems or native RDF file storage formats. Here is a way of visualizing the triplet for the given statements above:</p>
<pre><code class="language-mermaid">graph LRsky --is colored--&gt; blue
ocean --is colored--&gt; blue
grass --is colored--&gt; green</code></pre>
<p>The RDF triples &quot;The sky is colored blue.&quot;, &quot;Grass is colored green.&quot;, and &quot;The ocean is colored blue&quot; can all be represented as a Directed Multigraph \(G\). The nodes \(sky\), \(ocean\), and \(grass\) are <strong>Subjects</strong>, the nodes \(blue\) and \(green\) are <strong>Objects</strong>, and the edge \(is colored\) is the <strong>Predicate</strong> in these RDF triple.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Overview of the Resource Description Framework &#40;RDF&#41;</em>. <a href="https://jacobzelko.com/02182022165447-rdf-overview">https://jacobzelko.com/02182022165447-rdf-overview</a>. February 18 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 18 Feb 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  What Are Claims?  ]]>
  </title>
  <link> https://jacobzelko.com/02142022220749-claims-summary/index.html </link>
  <guid> https://jacobzelko.com/02142022220749-claims-summary/index.html </guid>
  <description>
    <![CDATA[  An overview on what are medical claims within the US  ]]>
  </description>  
  
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    <![CDATA[  
<h1>What Are Claims?</h1>
<p><strong>Date:</strong> February 14 2022</p>
<p><strong>Summary:</strong> An overview on what are medical claims within the US</p>
<p><strong>Keywords:</strong> #archive #us #claims #medical #process #patient</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<ul>
<li><p>Request for payment that you or your health care provider submits to your health insurer when you get items or services you think are covered. https://www.healthcare.gov/glossary/claim/</p>
</li>
<li><p>A claim is a request for payment for services and benefits you received.</p>
</li>
</ul>
<p>https://www.cms.gov/apps/glossary/default.asp?Letter&#61;C&amp;Language&#61;English#g136</p>
<p>In general, there are <a href="https://jacobzelko.com/12092021203839-types-claims">several different types of claims</a>.</p>
<p>The following diagram depicts how data is generated and passed through a medical billing process:</p>
<pre><code class="language-mermaid">flowchart TBn1&#91;Medical Staff&#93; --&gt; n2&#91;Medical Services&#93;;
n3&#91;Patients&#93; --&gt; n2;
n2 --&gt; n4&#91;Medical Coders&#93;;
n4 --&gt; n5&#91;Medical Billers&#93;;
n5 --&gt; n3;
n5 &lt;--&gt; n6&#91;Insurance Providers&#93;;style n1 fill:#006400
style n3 fill:#006400
style n6 fill:#8b0000</code></pre>
<p>Here, the green blocks representing medical staff and patients, denote where data originates from. Whenever a medical staffer provides or a patient seeks a medical service, data is generated &#40;these encounters could be routine health check-ups, emergency room visits, or anything involving an interaction with a medical service provider&#41;. These services are then recorded and passed along to medical coders whose job it is to match a service provided with a correct standardized medical code &#40;standards include coding such as ICD-10, HCPCS, etc&#41;. After these services are matched to a correct standard, the coded services are then passed on to a medical biller who determines what is covered by a patient&#39;s insurance and what is not. Depending on what is or is not covered, this claims data then passes to insurance providers in a back and forth process to adequately pay for the services utilized by the patient and patients may also be directly be billed for services leading to potentially either return visits or these claims to be appealed by the patient.</p>
<p>https://www.wikiwand.com/en/Medical_billing TODO: add brief blurb about Revenue Cycle Management as note</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Are Claims?</em>. <a href="https://jacobzelko.com/02142022220749-claims-summary">https://jacobzelko.com/02142022220749-claims-summary</a>. February 14 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 14 Feb 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  The Resource Description Framework &#40;RDF&#41; Explained  ]]>
  </title>
  <link> https://jacobzelko.com/01282022220116-resource-description-framework/index.html </link>
  <guid> https://jacobzelko.com/01282022220116-resource-description-framework/index.html </guid>
  <description>
    <![CDATA[  An explanation on what the Resource Description Framework is  ]]>
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    <![CDATA[  
<h1>The Resource Description Framework &#40;RDF&#41; Explained</h1>
<p><strong>Date:</strong> January 28 2022</p>
<p><strong>Summary:</strong> An explanation on what the Resource Description Framework is</p>
<p><strong>Keywords:</strong> ##outline #rdf #resource #description #framework #metadata #semantic #web #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<ul>
<li><p><a href="https://jacobzelko.com/02182022164256-rdf-history">History of the RDF</a> - Very brief history of the RDF</p>
</li>
<li><p><a href="https://jacobzelko.com/02182022172731-rdf-file-formats">RDF Data Storage Formats</a> - Types of data storage formats available for RDF</p>
</li>
<li><p><a href="https://jacobzelko.com/02182022165447-rdf-overview">Overview of the Resource Description Framework &#40;RDF&#41;</a> - An overview of the RDF and how it works</p>
</li>
<li><p><a href="https://jacobzelko.com/02182022190950-rdf-acset-representation">How To Imagine an RDF as an ACSet</a> - How RDFs can be conceptualized as an ACSet</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>The Resource Description Framework &#40;RDF&#41; Explained</em>. <a href="https://jacobzelko.com/01282022220116-resource-description-framework">https://jacobzelko.com/01282022220116-resource-description-framework</a>. January 28 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Fri, 28 Jan 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  What Is Peripheral Capillary Oxygen Saturation &#40;SpO2&#41;?  ]]>
  </title>
  <link> https://jacobzelko.com/01112022220843-spo2-explained/index.html </link>
  <guid> https://jacobzelko.com/01112022220843-spo2-explained/index.html </guid>
  <description>
    <![CDATA[  What Peripheral Capillary Oxygen Saturation &#40;SpO2&#41; is and the pros and cons associated with its use  ]]>
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    <![CDATA[  
<h1>What Is Peripheral Capillary Oxygen Saturation &#40;SpO2&#41;?</h1>
<p><strong>Date:</strong> January 11 2022</p>
<p><strong>Summary:</strong> What Peripheral Capillary Oxygen Saturation &#40;SpO2&#41; is and the pros and cons associated with its use</p>
<p><strong>Keywords:</strong> #biomarker #biology #physiology #health #blood #signal #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Condition Complications</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>Peripheral Capillary Oxygen Saturation &#40;SpO2&#41; measures blood hemoglobin oxygen saturation.</p>
<h3 id="condition_complications">Condition Complications</h3>
<p>Lower resting SpO2 levels tend to be seen in persons with chronic pulmonary disease. Often, they will require oxygen to achieve a healthy SpO2 reading. &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Is Peripheral Capillary Oxygen Saturation &#40;SpO2&#41;?</em>. <a href="https://jacobzelko.com/01112022220843-spo2-explained">https://jacobzelko.com/01112022220843-spo2-explained</a>. January 11 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 11 Jan 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Peripheral Capillary Oxygen Saturation &#40;SpO2&#41;  ]]>
  </title>
  <link> https://jacobzelko.com/01112022215755-oxygen-saturation/index.html </link>
  <guid> https://jacobzelko.com/01112022215755-oxygen-saturation/index.html </guid>
  <description>
    <![CDATA[  A summary of what Peripheral Capillary Oxygen Saturation &#40;SpO2&#41; is and its use as a biomarker and use in signal processing.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Peripheral Capillary Oxygen Saturation &#40;SpO2&#41;</h1>
<p><strong>Date:</strong> January 11 2022</p>
<p><strong>Summary:</strong> A summary of what Peripheral Capillary Oxygen Saturation &#40;SpO2&#41; is and its use as a biomarker and use in signal processing.</p>
<p><strong>Keywords:</strong> ##summary ##healthcare #informatics #health #signal #biomarker #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Overview</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="overview">Overview</h3>
<ul>
<li><p><a href="https://jacobzelko.com/01112022220843-spo2-explained">What Is Peripheral Capillary Oxygen Saturation &#40;SpO2&#41;</a></p>
</li>
</ul>
<pre><code class="language-julia">- **Summary:** What SpO2 is and their pros and cons as a biomarker</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Peripheral Capillary Oxygen Saturation &#40;SpO2&#41;</em>. <a href="https://jacobzelko.com/01112022215755-oxygen-saturation">https://jacobzelko.com/01112022215755-oxygen-saturation</a>. January 11 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 11 Jan 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Digital Health: Tracking Physiomes and Activity Using Wearable Biosensors Reveals Useful Health-Related Information  ]]>
  </title>
  <link> https://jacobzelko.com/01112022214236-tracking-physiomes/index.html </link>
  <guid> https://jacobzelko.com/01112022214236-tracking-physiomes/index.html </guid>
  <description>
    <![CDATA[  Utilizing wearables to detect and find abnormalities in patient conditions  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Digital Health: Tracking Physiomes and Activity Using Wearable Biosensors Reveals Useful Health-Related Information</h1>
<p><strong>Date:</strong> January 11 2022</p>
<p><strong>Summary:</strong> Utilizing wearables to detect and find abnormalities in patient conditions</p>
<p><strong>Keywords:</strong> #mhealth #spo2 #heart #rate #skin #temperature #lyme #disease ##bibliography #archive</p>
<h1>Bibliography</h1>
<p>X. Li et al., &quot;Digital Health: Tracking Physiomes and Activity Using Wearable Biosensors Reveals Useful Health-Related Information,&quot; PLoS Biol, vol. 15, no. 1, p. e2001402, Jan. 2017, doi: 10.1371/journal.pbio.2001402.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Goals</li><li>Population Details</li><li>Usage of Wearables</li><li>Lyme Disease Found in Subject 1</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="goals">Goals</h3>
<ol>
<li><p>Record real-time physiological data</p>
</li>
<li><p>Measure daily activity to find sleep patterns and reactions to surroundings</p>
</li>
<li><p>Create personalized baselines</p>
</li>
<li><p>Find differences in health of varying individuals</p>
</li>
<li><p>Detect when someone could potentially begin to fall ill</p>
</li>
</ol>
<h3 id="population_details">Population Details</h3>
<ul>
<li><p>40 people were used for validation testing</p>
</li>
<li><p>Participant #1 was tracked 679 days</p>
</li>
</ul>
<pre><code class="language-julia">- Nearly 250000 measurements on this person per day
- Only 603 days of records were used</code></pre>
<h3 id="usage_of_wearables">Usage of Wearables</h3>
<ul>
<li><p>Metrics Collected</p>
</li>
</ul>
<pre><code class="language-julia">- Heart Rate
- &#91;SpO2&#93;&#40;https://jacobzelko.com/01112022220843-spo2-explained&#41;
- Skin Temperature</code></pre>
<ul>
<li><p>Wearables were shown to:</p>
</li>
</ul>
<pre><code class="language-julia">- Detect early signs of Lyme Disease
- Determine an inflammatory response was occurring</code></pre>
<ul>
<li><p>Sensors</p>
</li>
</ul>
<pre><code class="language-julia">- HR
	- &#91;Basis B1&#93;&#40;https://www.livescience.com/42460-basis-b1-fitness-tracker-review.html#:~:text&#61;the&#37;20best&#37;20prices-,The&#37;20Basis&#37;20B1&#37;20is&#37;20an&#37;20activity&#37;20tracker&#37;20that&#39;s&#37;20marketed&#37;20as,burned,&#37;20distance&#37;20walked&#37;20and&#37;20sleep.&#41; - discontinued
	- &#91;Basis Peak&#93;&#40;https://www.livescience.com/42460-basis-b1-fitness-tracker-review.html#:~:text&#61;the best prices-,The Basis B1 is an activity tracker that&#39;s marketed as,burned, distance walked and sleep.&#41; - recalled, discontinued
	- &#91;Scanadu&#93;&#40;https://techcrunch.com/2016/12/13/fda-orders-scanadu-to-shut-down-support-for-its-scout-device-and-customers-are-mad/?guccounter&#61;1&amp;guce_referrer&#61;aHR0cHM6Ly93d3cuZ29vZ2xlLmNvbS8&amp;guce_referrer_sig&#61;AQAAALiRl2t7ma1bFByNmrMrAP8vVK5_iBXu35z3PuC9UVIY6cll8UaL5w2RWGvOBU68epFCefiwLghsqP3rxoNEGSKtAXSuMXQKrbSDsE4ti9xcfwcnjMtrx46tP89acwwmKKBJTdvCgmVRgo_zwQDSMztMxVAFFvbmhmYcdq8mTvER&#41; - discontinued
- Skin Temperature
	- &#91;Basis B1&#93;&#40;https://www.livescience.com/42460-basis-b1-fitness-tracker-review.html#:~:text&#61;the&#37;20best&#37;20prices-,The&#37;20Basis&#37;20B1&#37;20is&#37;20an&#37;20activity&#37;20tracker&#37;20that&#39;s&#37;20marketed&#37;20as,burned,&#37;20distance&#37;20walked&#37;20and&#37;20sleep.&#41; - discontinued
	- &#91;Basis Peak&#93;&#40;https://www.livescience.com/42460-basis-b1-fitness-tracker-review.html#:~:text&#61;the best prices-,The Basis B1 is an activity tracker that&#39;s marketed as,burned, distance walked and sleep.&#41; - recalled, discontinued</code></pre>
<h3 id="lyme_disease_found_in_subject_1">Lyme Disease Found in Subject 1</h3>
<ul>
<li><p>During days 470 - 474 outliers were found in</p>
</li>
</ul>
<pre><code class="language-julia">- Abnormally elevated HR
- Abnormally elevated skin temperature 
- Decrease in SpO2
- Congruent with previous studies on nonportable devices &#91;1&#93;</code></pre>
<ul>
<li><p>Coincided with Lyme Disease onset</p>
</li>
</ul>
<pre><code class="language-julia">- Detected before typical bull&#39;s rash manifestation
- It was reported that SpO2 and HR was most important for alerting of Lyme Disease
- Strong and repeated signals in change of heart algorithm were detected during Lyme Disease</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Digital Health: Tracking Physiomes and Activity Using Wearable Biosensors Reveals Useful Health-Related Information</em>. <a href="https://jacobzelko.com/01112022214236-tracking-physiomes">https://jacobzelko.com/01112022214236-tracking-physiomes</a>. January 11 2022.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 11 Jan 2022 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Medical Claims Files  ]]>
  </title>
  <link> https://jacobzelko.com/12092021205237-medical-claims-files/index.html </link>
  <guid> https://jacobzelko.com/12092021205237-medical-claims-files/index.html </guid>
  <description>
    <![CDATA[  A summary overview on what medical claims data are  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Medical Claims Files</h1>
<p><strong>Date:</strong> December 9 2021</p>
<p><strong>Summary:</strong> A summary overview on what medical claims data are</p>
<p><strong>Keywords:</strong> #medical #claims ##summary #us #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>A type of data file composed of service level payment info such as: 	- Member demographics 	- Provider info 	- Charge/Payment/Allowed info 	- Clinical diagnosis codes 	- Procedure codes </p>
<p>This comes from non-denied adjudicated claims for each billed service.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Medical Claims Files</em>. <a href="https://jacobzelko.com/12092021205237-medical-claims-files">https://jacobzelko.com/12092021205237-medical-claims-files</a>. December 9 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 09 Dec 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Pharmacy Claims Files  ]]>
  </title>
  <link> https://jacobzelko.com/12092021212535-dental-claims-files/index.html </link>
  <guid> https://jacobzelko.com/12092021212535-dental-claims-files/index.html </guid>
  <description>
    <![CDATA[  A summary overview on what pharmacy claims data are  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Pharmacy Claims Files</h1>
<p><strong>Date:</strong> December 9 2021</p>
<p><strong>Summary:</strong> A summary overview on what pharmacy claims data are</p>
<p><strong>Keywords:</strong> #pharmacy #claims ##summary #us #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>A type of data file composed of service level payment info such as: 	- Member demographics 	- Provider info 	- Charge/Payment/Allowed info 	- Clinical diagnosis codes  	- Procedure codes </p>
<p>This comes from non-denied adjudicated claims for each billed service.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Pharmacy Claims Files</em>. <a href="https://jacobzelko.com/12092021212535-dental-claims-files">https://jacobzelko.com/12092021212535-dental-claims-files</a>. December 9 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 09 Dec 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Pharmacy Claims Files  ]]>
  </title>
  <link> https://jacobzelko.com/12092021211642-pharmacy-claims-files/index.html </link>
  <guid> https://jacobzelko.com/12092021211642-pharmacy-claims-files/index.html </guid>
  <description>
    <![CDATA[  A summary overview on what pharmacy claims data are  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Pharmacy Claims Files</h1>
<p><strong>Date:</strong> December 9 2021</p>
<p><strong>Summary:</strong> A summary overview on what pharmacy claims data are</p>
<p><strong>Keywords:</strong> #pharmacy #claims ##summary #us #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>A type of data file composed of service level payment info such as: 	- Member demographics 	- Provider info 	- Charge/Payment/Allowed info 	- National drug codes 	- Procedure codes </p>
<p>This comes from non-denied adjudicated claims for each billed service.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Pharmacy Claims Files</em>. <a href="https://jacobzelko.com/12092021211642-pharmacy-claims-files">https://jacobzelko.com/12092021211642-pharmacy-claims-files</a>. December 9 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 09 Dec 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Provider Files  ]]>
  </title>
  <link> https://jacobzelko.com/12092021213017-provider-files/index.html </link>
  <guid> https://jacobzelko.com/12092021213017-provider-files/index.html </guid>
  <description>
    <![CDATA[  An overview of what provider files are  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Provider Files</h1>
<p><strong>Date:</strong> December 9 2021</p>
<p><strong>Summary:</strong> An overview of what provider files are</p>
<p><strong>Keywords:</strong> #provider #files #provider #identifier #location ##summary #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>TODO: Finish Note here</p>
<ul>
<li><p>Data file composed of information including</p>
</li>
</ul>
<pre><code class="language-julia">- Provider IDs
- Provider names
- National Provider Identifiers &#40;NPI&#41;
- Specialty codes
- Practice locations</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Provider Files</em>. <a href="https://jacobzelko.com/12092021213017-provider-files">https://jacobzelko.com/12092021213017-provider-files</a>. December 9 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 09 Dec 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Pure Functions in Programming  ]]>
  </title>
  <link> https://jacobzelko.com/11082021225843-pure-functions/index.html </link>
  <guid> https://jacobzelko.com/11082021225843-pure-functions/index.html </guid>
  <description>
    <![CDATA[  An attempted overview on what is meant by pure functions  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Pure Functions in Programming</h1>
<p><strong>Date:</strong> November 8 2021</p>
<p><strong>Summary:</strong> An attempted overview on what is meant by pure functions</p>
<p><strong>Keywords:</strong> #pure #functions #functional #programming  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>The definition of pure is somewhat of a moving target. Pure can mean many things and when applied to programming functions - even more so. Based on querying the <a href="https://discourse.julialang.org/t/can-programming-in-julia-be-pure/71165">Julia community</a>, here was what I understood pure functions to be.</p>
<p>Based on Milewski&#39;s definition, &quot;A pure function is one in which the same result is always produced with no side effects given the same input.&quot; &#91;1&#93; <a href="https://github.com/CameronBieganek">Cameron Bieganek</a> explained how, in Julia specifically, you can write functions that are &quot;probably&quot; pure. However, there is no real guarantee that a function is actually pure, because it depends on the various methods that have been implemented. I like the notion of &quot;probably&quot; pure as it encapsulates a more pragmatic approach to the internals of a given language. It lets one get away without having to necessarily be completely aware of all the internals when discussing purity.</p>
<p>Finally, pure functions are different from mathematical functions for the reason that mathematical functions map a value to another value. Pure functions written in a programming language involve more than just a mapping. &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Pure Functions in Programming</em>. <a href="https://jacobzelko.com/11082021225843-pure-functions">https://jacobzelko.com/11082021225843-pure-functions</a>. November 8 2021.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; B. Milewski, Category Theory for Programmers, Version v1.3.0-0-g6bb0bc0. 2019.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 08 Nov 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Notes on Programming in Haskell  ]]>
  </title>
  <link> https://jacobzelko.com/11032021155827-haskell-programming/index.html </link>
  <guid> https://jacobzelko.com/11032021155827-haskell-programming/index.html </guid>
  <description>
    <![CDATA[  My notes on an overview and summary on how to use Haskell  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Notes on Programming in Haskell</h1>
<p><strong>Date:</strong> November 3 2021</p>
<p><strong>Summary:</strong> My notes on an overview and summary on how to use Haskell</p>
<p><strong>Keywords:</strong> #syntax ##summary #haskell #programming #languages #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Packages</li><li>Functions<ol><li>Ar</li></ol></li><li>Haskell Type System<ol><li><code>Bool</code></li><li><code>Char</code></li><li><code>String</code></li><li><code>&#40;&#41;</code></li><li>Type Coercion</li></ol></li><li>Pattern Matching</li><li>Syntax<ol><li>Loops and Recursion</li><li>Guards</li><li>Types</li><li>Functions<ol><li>Defining Function in <code>ghci</code></li><li>Defining Function in a Script</li><li>Variable Wildcards</li></ol></li><li>Function Composition</li><li>Double colons</li><li>Infix Operators</li></ol></li><li>Equality<ol><li>Functional Equality</li><li>Extensional Equality</li></ol></li><li>Examples<ol><li>Print &quot;Hello World&#33;&quot;</li><li>Reload a Loaded File</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="packages">Packages</h3>
<p><a href="https://jacobzelko.com/11032021171123-prelude-haskell-library">Prelude</a> - Haskell&#39;s Standard Library <a href="https://jacobzelko.com/10022023022918-data-haskell-library">Data</a> - Common abstract data type manipulations for use within Haskell</p>
<h3 id="functions">Functions</h3>
<p>All functions are <a href="https://jacobzelko.com/11082021225843-pure-functions">pure</a> within Haskell. This means that the same result is always produced with no side effects given the same input to a Haskell function.</p>
<p>Haskell functions are lazy.  They do not evaluate until needed.</p>
<h4 id="ar">Ar</h4>
<h3 id="haskell_type_system">Haskell Type System</h3>
<p>Except only in very seldom cases, type annotations are optional in Haskell.</p>
<h4 id="bool"><code>Bool</code></h4>
<p>A two element set of <code>True</code> and <code>False</code>.</p>
<h4 id="char"><code>Char</code></h4>
<p>A set of all Unicode characters.</p>
<h4 id="string"><code>String</code></h4>
<p>A synonym for an infinite list of <code>Char</code>&#39;s.</p>
<h4 id="8979721170172830534"><code>&#40;&#41;</code></h4>
<p>A dummy value where there is only one instance of it ever. It is pronounced unit.</p>
<pre><code class="language-haskell">-- Unit typing example-- Function declaration
f44 :: &#40;&#41; -&gt; Integer-- Function definition
f44 &#40;&#41; &#61; 44-- Function invocation
f44 &#40;&#41; -- Returns the value 44</code></pre>
<h4 id="type_coercion">Type Coercion</h4>
<p>Haskell provides <code>unsafeCoerce</code> to bypass the type system.</p>
<h3 id="pattern_matching">Pattern Matching</h3>
<p>Example:</p>
<pre><code class="language-haskell">is_zero 0 &#61; True
is_zero _ &#61; False</code></pre>
<h3 id="syntax">Syntax</h3>
<h4 id="loops_and_recursion">Loops and Recursion</h4>
<p>Loops do not exist in Haskell&#33; Rather, to do looping, one must use recursion. Here is a Haskell example that calculates the factorial of a number:</p>
<pre><code class="language-haskell">fac n &#61; do
  if n &lt;&#61; 1
    then 1
  else
    n * fac &#40;n - 1&#41;</code></pre>
<h4 id="guards">Guards</h4>
<p>Requires a boolean expression that determines the definition of a function. Used most often in recursion. Example:</p>
<pre><code class="language-haskell">-- Generates a list from a given series of terms
asc :: Int -&gt; Int -&gt; &#91;Int&#93;
asc n m 
  | m &lt; n &#61; &#91;&#93;
  | m &#61;&#61; n &#61; &#91;m&#93;
  | m &gt; n &#61; n : asc &#40;n &#43; 1&#41; m</code></pre>
<h4 id="types">Types</h4>
<p>All concrete types start with a capital letter. Names of type variables start with a lowercase letter.</p>
<h4 id="functions__2">Functions</h4>
<p>A function type is created by putting an arrow between two types.</p>
<pre><code class="language-haskell">f :: foo -&gt; bar</code></pre>
<p>A function definition uses the name of the function and formal parameters. The body of a function follows an equals sign. Furthermore, the body of a function is always an expression.</p>
<p>One of the strangest quirks about Haskell functions is that arguments are neither surrounded by parentheses nor separated by commas.</p>
<h5 id="defining_function_in_ghci">Defining Function in <code>ghci</code></h5>
<pre><code class="language-julia">-- Defining a function within ghci
-- Requires the use of multiple lines as denoted
-- by :&#123; ... :&#125; 
« Prelude » λ&gt; :&#123;
Prelude| add :: Integer -&gt; Integer -&gt; Integer -- Function declaration
Prelude| add x y &#61; x &#43; y -- Function definition
Prelude| :&#125;« Prelude » λ&gt; &#40;add 5 3&#41; -- Compute sum of two numbers
8</code></pre>
<h5 id="defining_function_in_a_script">Defining Function in a Script</h5>
<pre><code class="language-haskell">-- Creating function declaration
add :: Integer -&gt; Integer -&gt; Integer-- Creating function definition
add x y &#61; x &#43; y-- Compute sum of two numbers
add 5 3</code></pre>
<h5 id="variable_wildcards">Variable Wildcards</h5>
<p>Arguments can be discarded with a wildcard by the following notation:</p>
<pre><code class="language-haskell">fInt :: Integer -&gt; &#40;&#41;
fInt _ &#61; &#40;&#41;</code></pre>
<h4 id="function_composition">Function Composition</h4>
<p>Functions can be composed by putting a period between them &#40;or a Unicode circle, &quot;◦&quot;&#41;:</p>
<pre><code class="language-haskell">-- Define two functions:
f1 :: A -&gt; B
f2 :: B -&gt; C-- Compose them together:
f1 . f2-- Or use alternative composition syntax:
f1 ◦ f2</code></pre>
<h4 id="double_colons">Double colons</h4>
<p>In Haskell, a double colon means, &quot;has type of...&quot;</p>
<pre><code class="language-haskell">f :: foo -&gt; bar</code></pre>
<h4 id="infix_operators">Infix Operators</h4>
<p>Any infix operator can be turned into a two-argument function by surrounding them with parentheses:</p>
<pre><code class="language-haskell">&quot;Hello &quot; &#43;&#43; &quot;world&#33;&quot;</code></pre>
<p>Can be rewritten as:</p>
<pre><code class="language-haskell">&#40;&#43;&#43;&#41; &quot;Hello &quot; &quot;world&#33;&quot;</code></pre>
<h3 id="equality">Equality</h3>
<h4 id="functional_equality">Functional Equality</h4>
<p>Haskell enables you to express equality of functions:</p>
<pre><code class="language-haskell">mappend &#61; &#40;&#43;&#43;&#41;</code></pre>
<p>This is also known as point-free equality as the arguments to these functions are not defined.</p>
<h4 id="extensional_equality">Extensional Equality</h4>
<p>Haskell defines extensional equality loosely where</p>
<pre><code class="language-haskell">mappend s1 s2 &#61; &#40;&#43;&#43;&#41; s1 s2</code></pre>
<p>is saying that the output of the function of the left is equivalent to the output of the function on the right. This is also known as point-wise equality as the arguments &#40;points&#41; are defined.</p>
<h3 id="examples">Examples</h3>
<h4 id="print_hello_world">Print &quot;Hello World&#33;&quot;</h4>
<p>This goes in a script called <code>hello.hs</code></p>
<pre><code class="language-haskell">main &#61; do
    putStrLn &quot;Hello World&#33;&quot;</code></pre>
<p>To load it within <code>ghci</code>, open <code>ghci</code> within the same repository that houses the script then run in <code>gchi</code>:</p>
<ol>
<li><p><code>:load &quot;hello.hs&quot;</code></p>
</li>
<li><p><code>:main</code></p>
</li>
</ol>
<p>And here would be the respective output one should see</p>
<pre><code class="language-julia">λ&gt; :load &quot;hello.hs&quot;
&#91;1 of 1&#93; Compiling Main             &#40; hello.hs, interpreted &#41;
Ok, one module loaded.
λ&gt; :main
Hello World&#33;</code></pre>
<h4 id="reload_a_loaded_file">Reload a Loaded File</h4>
<p>To reload a previously loaded file after you make changes to the file, run <code>:reload</code>.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Notes on Programming in Haskell</em>. <a href="https://jacobzelko.com/11032021155827-haskell-programming">https://jacobzelko.com/11032021155827-haskell-programming</a>. November 3 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Wed, 03 Nov 2021 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Functional Programming  ]]>
  </title>
  <link> https://jacobzelko.com/11032021180434-functional-programming/index.html </link>
  <guid> https://jacobzelko.com/11032021180434-functional-programming/index.html </guid>
  <description>
    <![CDATA[  An overview on what functional programming is and the  ]]>
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    <![CDATA[  
<h1>Functional Programming</h1>
<p><strong>Date:</strong> November 3 2021</p>
<p><strong>Summary:</strong> An overview on what functional programming is and the</p>
<p><strong>Keywords:</strong> #functional #programming #paradigm #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Overview</li><li>Paradigm</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="overview">Overview</h3>
<ul>
<li><p>There is an interest in pure &#40;mathematical&#41; functions</p>
<ul>
<li><p>Functions that some input and output but nothing else</p>
</li>
</ul>
</li>
<li><p>Immutable data </p>
<ul>
<li><p>Data types cannot be changed in-place</p>
</li>
</ul>
</li>
<li><p>Less side effects</p>
</li>
<li><p>Declarative</p>
</li>
<li><p>Easier to verify</p>
<ul>
<li><p>Can mathematically prove an implementation</p>
</li>
</ul>
</li>
</ul>
<h3 id="paradigm">Paradigm</h3>
<p>The approach of asking programming questions that functional programmers take is much more overarching. &#91;1&#93; Examples are:</p>
<ol>
<li><p>When designing an interactive program, they would ask: What is interaction?</p>
</li>
<li><p>When implementing Conway&#39;s Game of Life, they would ruminate on the meaning of life.</p>
</li>
</ol>
<p>To a functional programmer, the essence of programming, per Milewski, is to take big problems and decompose them into smaller problems. Then create small solutions that can then be composed together to solve the big problem. &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Functional Programming</em>. <a href="https://jacobzelko.com/11032021180434-functional-programming">https://jacobzelko.com/11032021180434-functional-programming</a>. November 3 2021.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; B. Milewski, Category Theory for Programmers, Version v1.3.0-0-g6bb0bc0. 2019.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Wed, 03 Nov 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Prelude - Haskell&#39;s Standard Library  ]]>
  </title>
  <link> https://jacobzelko.com/11032021171123-prelude-haskell-library/index.html </link>
  <guid> https://jacobzelko.com/11032021171123-prelude-haskell-library/index.html </guid>
  <description>
    <![CDATA[  An overview of important components from Haskell&#39;s standard  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Prelude - Haskell&#39;s Standard Library</h1>
<p><strong>Date:</strong> November 3 2021</p>
<p><strong>Summary:</strong> An overview of important components from Haskell&#39;s standard</p>
<p><strong>Keywords:</strong> #library #package #standard #prelude #haskell #programming #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Identity Function</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="identity_function">Identity Function</h3>
<p><code>id</code> returns the argument it is given:</p>
<pre><code class="language-haskell">-- Using Prelude to declare the identity function
-- &#96;a&#96; is a type variable and stands in for all types
id :: a -&gt; a-- Definition of the function
id x &#61; x</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Prelude - Haskell&#39;s Standard Library</em>. <a href="https://jacobzelko.com/11032021171123-prelude-haskell-library">https://jacobzelko.com/11032021171123-prelude-haskell-library</a>. November 3 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Wed, 03 Nov 2021 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Weapons of Math Destruction  ]]>
  </title>
  <link> https://jacobzelko.com/11012021133502-weapons-math-destruction/index.html </link>
  <guid> https://jacobzelko.com/11012021133502-weapons-math-destruction/index.html </guid>
  <description>
    <![CDATA[  How algorithms and mathematics can be used to construct active harm across populations  ]]>
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<h1>Weapons of Math Destruction</h1>
<p><strong>Date:</strong> November 1 2021</p>
<p><strong>Summary:</strong> How algorithms and mathematics can be used to construct active harm across populations</p>
<p><strong>Keywords:</strong> #archive #book #weapon #math #destruction</p>
<h1>Bibliography</h1>
<p>O&#39;neil, C. &#40;2016&#41;. Weapons of math destruction: How big data increases inequality and threatens democracy. Broadway Books.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Quotes</li><li>General Observations</li><li>Credit Scores as a Proxy for Human Value</li><li>Concluding Thoughts</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="quotes">Quotes</h3>
<blockquote>
<p>&quot;Sometimes the job of a data scientist is to know when you don&#39;t know enough.&quot;</p>
</blockquote>
<h3 id="general_observations">General Observations</h3>
<p>According to O&#39;neil, profits have often come about to provide a stand-in as a value judgement on what is right or true. To that end, we are often vetted by algorithmically based on who we are &#40;e.g. our backgrounds, race, etc.&#41; and not on how we actually perform or fare.</p>
<p>Model construction happens from:</p>
<ol>
<li><p>not just from data but from the choices we make about which data to pay attention to—and which to leave out.</p>
</li>
</ol>
<p>Those choices are not just about logistics, profits, and efficiency. They are fundamentally moral. We have to learn to interrogate our data collection process, not just our algorithms.</p>
<h3 id="credit_scores_as_a_proxy_for_human_value">Credit Scores as a Proxy for Human Value</h3>
<p>When considering credit scores, money or wealth is no longer just about a means of survival. Wrapped up in these scores is also a value judgement on someone&#39;s self-worth. </p>
<p>Algorithms prioritize two factors: efficiency and profit. They do not care about justice or the well-being of the people underlying the data they are analyzing.</p>
<h3 id="concluding_thoughts">Concluding Thoughts</h3>
<p>So the first step is to get a grip on our techno-utopia, that unbounded and unwarranted hope in what algorithms and technology can accomplish. Before asking them to do better, we have to admit they can’t do everything</p>
<p>audits have to be carefully designed and tested by human beings, and afterward automated</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Weapons of Math Destruction</em>. <a href="https://jacobzelko.com/11012021133502-weapons-math-destruction">https://jacobzelko.com/11012021133502-weapons-math-destruction</a>. November 1 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 01 Nov 2021 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  Real-World Data and Real-World Evidence  ]]>
  </title>
  <link> https://jacobzelko.com/10282021140730-real-world-evidence/index.html </link>
  <guid> https://jacobzelko.com/10282021140730-real-world-evidence/index.html </guid>
  <description>
    <![CDATA[  A summary of what real-world data and evidence is according to the United States Food and Drug Administration  ]]>
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<h1>Real-World Data and Real-World Evidence</h1>
<p><strong>Date:</strong> October 28 2021</p>
<p><strong>Summary:</strong> A summary of what real-world data and evidence is according to the United States Food and Drug Administration</p>
<p><strong>Keywords:</strong> ##summary #real #world #data #evidence #fda  #archive</p>
<h1>Bibliography</h1>
<p>U.S. Food and Drug Administration, &quot;Real-World Evidence.&quot; Sep. 30, 2021. Accessed: Oct. 27, 2021. &#91;Online&#93;. Available: https://www.fda.gov/science-research/science-and-research-special-topics/real-world-evidence</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>United States Food and Drug Administration Definitions</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3>Background</h3>
<p>Real-World Evidence, according to Congress, is any data that concerns the use, benefits, or risks of a drug from nontraditional sources &#40;i.e. clinical trials&#41;</p>
<h3 id="united_states_food_and_drug_administration_definitions">United States Food and Drug Administration Definitions</h3>
<p>The United States Food and Drug Administration found this definition from Congress to be too expansive and vague. For their purposes, they limited the language further to make the definitions less vague. Here they are:</p>
<ul>
<li><p><strong>Real-world data</strong> &quot;relates to patient health status and/or the delivery of health care routinely collected from a variety of sources.&quot;</p>
</li>
</ul>
<p>Some examples include:</p>
<ul>
<li><p>Electronic health records</p>
</li>
<li><p>Claims and billing activities</p>
</li>
<li><p>Product and disease registries</p>
</li>
<li><p>Patient-generated data including in home-use settings</p>
</li>
<li><p>Mobile device data</p>
</li>
<li><p><strong>Real-world evidence</strong> is &quot;clinical evidence regarding the usage and potential benefits or risks of a medical product derived from analysis of real-world data.&quot;</p>
</li>
</ul>
<p>Some examples include:</p>
<ul>
<li><p>Randomized trials </p>
<ul>
<li><p>Large simple trials</p>
</li>
<li><p>Pragmatic trials</p>
<ul>
<li><p>Observational studies &#40;prospective and/or retrospective&#41;.</p>
</li>
</ul>
</li>
</ul>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Real-World Data and Real-World Evidence</em>. <a href="https://jacobzelko.com/10282021140730-real-world-evidence">https://jacobzelko.com/10282021140730-real-world-evidence</a>. October 28 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 28 Oct 2021 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Scoring systems in the intensive care unit: A compendium  ]]>
  </title>
  <link> https://jacobzelko.com/10152021023937-icu-rating-systems/index.html </link>
  <guid> https://jacobzelko.com/10152021023937-icu-rating-systems/index.html </guid>
  <description>
    <![CDATA[  A note that provides an overview to intensive care unit scoring systems  ]]>
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<h1>Scoring systems in the intensive care unit: A compendium</h1>
<p><strong>Date:</strong> October 14 2021</p>
<p><strong>Summary:</strong> A note that provides an overview to intensive care unit scoring systems</p>
<p><strong>Keywords:</strong> ##overview #intensive #care #unit #rating #scoring #prediction #quality #care #archive</p>
<h1>Bibliography</h1>
<p>A. Rapsang and D. C. Shyam, &quot;Scoring systems in the intensive care unit: A compendium,&quot; Indian Journal of Critical Care Medicine, vol. 18, no. 4, pp. 220–228, Apr. 2014, doi: 10.4103/0972-5229.130573.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>What is a Scoring System?</li><li>What Characterizes a Scoring System?</li><li>What Are Characteristics of an Ideal Model?</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>This paper was useful as it provided a good overview of intensive care unit scoring systems. It enumerated their characteristics and also talked about their advantages. The paper also went over a variety of scoring systems but as I was concerned with learning what scoring systems in general were, I stopped there.</p>
<h3 id="what_is_a_scoring_system">What is a Scoring System?</h3>
<blockquote>
<p>What is one approach clinical staff in an intensive care unit utilize to predict patient outcomes <em>and</em> to improve clinical decisions?</p>
</blockquote>
<p>In short, intensive care unit scoring systems&#33;</p>
<blockquote>
<p>What is an intensive care unit scoring system?</p>
</blockquote>
<p>These scoring systems &#40;also referred to as severity scales&#41; are calculated alongside traditional diagnosis methods. They are used to: </p>
<ol>
<li><p>Predict patient outcomes</p>
</li>
<li><p>Compare quality of care</p>
</li>
<li><p>Create breakdowns for clinical trials</p>
</li>
</ol>
<p>They are handy for also analyzing unexpected patient outcomes and what precipitated the outcome.</p>
<h3 id="what_characterizes_a_scoring_system">What Characterizes a Scoring System?</h3>
<blockquote>
<p>What is a scoring system comprised of?</p>
</blockquote>
<p>A scoring system generally has two components:</p>
<ol>
<li><p>Score - a number assigned to a given disease based on severity.</p>
</li>
<li><p>Probability Model - determines the probability of patient deaths.</p>
</li>
</ol>
<blockquote>
<p>How are scoring system probability models used?</p>
</blockquote>
<p>In practice, a model gives clinical decision makers additional insight into comparing patient populations for:</p>
<ol>
<li><p>Treatment</p>
</li>
<li><p>Triage</p>
</li>
<li><p>Comparative analysis</p>
</li>
<li><p>Understanding treatment effectiveness</p>
</li>
<li><p>Optimizing resources</p>
</li>
</ol>
<h3 id="what_are_characteristics_of_an_ideal_model">What Are Characteristics of an Ideal Model?</h3>
<blockquote>
<p>What are the three characteristics of an ideal model for scoring?</p>
</blockquote>
<p>An ideal model must be:</p>
<ol>
<li><p>Valid</p>
</li>
<li><p>Calibrated</p>
</li>
<li><p>Discriminated</p>
</li>
</ol>
<blockquote>
<p>What does it mean for a model to have &quot;validity&quot;?</p>
</blockquote>
<p>&quot;Validity&quot; means how well a model performs on test datasets during the model&#39;s creation.</p>
<blockquote>
<p>What does a &quot;calibrated&quot; model mean?</p>
</blockquote>
<p>The accuracy between estimated mortality probabilities and the actual mortalities experienced by patients. What is key to note is that it is also able to be statistically robust/rigorous. &#91;1&#93; Essentially, is the model well suited to the actual patients being evaluated?</p>
<blockquote>
<p>What does a model that is &quot;discriminatory&quot;?</p>
</blockquote>
<p>How well the model can determine what patients live and what patients die in practice. Examples of measures used to understand discriminatory patterns in a model are:</p>
<ul>
<li><p>Sensitivity</p>
</li>
<li><p>Specificity</p>
</li>
<li><p>False positive rate</p>
</li>
<li><p>False negative rate</p>
</li>
<li><p>Positive predictive power</p>
</li>
<li><p>Misclassification rate</p>
</li>
<li><p>Area under the receiver operating characteristic curve and</p>
</li>
<li><p>Concordance. &#91;2&#93;</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Scoring systems in the intensive care unit: A compendium</em>. <a href="https://jacobzelko.com/10152021023937-icu-rating-systems">https://jacobzelko.com/10152021023937-icu-rating-systems</a>. October 14 2021.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; J.-R. Le Gall, “The use of severity scores in the intensive care unit,” Intensive Care Med., vol. 31, no. 12, pp. 1618–1623, 2005.</p>
<p>&#91;2&#93; H. Champion, “Trauma scoring,” Scand. J. Surg., vol. 91, no. 1, pp. 12–22, 2002.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 14 Oct 2021 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Advantage to Disadvantage - Working Thoughts  ]]>
  </title>
  <link> https://jacobzelko.com/10092021131742-advantaged-to-disadvantaged/index.html </link>
  <guid> https://jacobzelko.com/10092021131742-advantaged-to-disadvantaged/index.html </guid>
  <description>
    <![CDATA[  An overview on my current thinking about equity and those who  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Advantage to Disadvantage - Working Thoughts</h1>
<p><strong>Date:</strong> October 9 2021</p>
<p><strong>Summary:</strong> An overview on my current thinking about equity and those who</p>
<p><strong>Keywords:</strong> #advantage #disadvantage #equity ##thought #race #class #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Thoughts on the Emerging Disadvantaged Trends in US Caucasian Populations</li><li>The Intersections of Advantaged and Disadvantaged</li><li>An Emerging Tension</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>This concerns my evolving thoughts concerning those who move from a state of historical advantage to one of disadvantage. The language of advantage to disadvantage comes from a Dr. Sylvie &#91;XXX&#93; who described this notion first at the &#91;2021 NAHDO Conference&#93;. &lt;&#33;–Find Dr. Sylvie&#39;s last name–&gt;</p>
<h3 id="thoughts_on_the_emerging_disadvantaged_trends_in_us_caucasian_populations">Thoughts on the Emerging Disadvantaged Trends in US Caucasian Populations</h3>
<p>Of particular note, there has been the emergence of a sub-class of persons in the United States amongst the low-income communities. Unlike historically marginalized people groups, such as African Americans, Asian American and Pacific Islanders, or Latin Americans, this particular sub-class exists at the intersection of traditional disadvantage and historical advantage: Caucasian. How can a class of such long-standing advantage find itself disadvantaged is the very question I have been thinking about.</p>
<h3 id="the_intersections_of_advantaged_and_disadvantaged">The Intersections of Advantaged and Disadvantaged</h3>
<p>I recall from a talk from the MIT Health Equity Conference that a Dr. &#91;XXX&#93; said the phrase, &quot;Race is not monolithic.&quot; &lt;&#33;–Find reference to MIT talk and Dr&#39;s name–&gt; That statement I think could also be extended to class structure as the aphorism, &quot;Class is not monolithic.&quot; In popular discussion, the conversation about disadvantaged populations generally have focused particularly at the intersection of disadvantage-disadvantage with respect to race and class. Yet, the intersection of advantage-disadvantage produces an uncomfortable problem: how should we handle these populations?</p>
<p>This intersectional breakdown could be summarized loosely as follows:</p>
<table><tr><th align="right">Type</th><th align="right">Race</th><th align="right">Class</th><th align="right">Examples</th></tr><tr><td align="right">Historically advantaged</td><td align="right">Advantaged</td><td align="right">Advantaged</td><td align="right">Victorian aristocracy, robber barons</td></tr><tr><td align="right">Emerging advantaged</td><td align="right">Disadvantaged</td><td align="right">Advantaged</td><td align="right">Textile traders, public servants</td></tr><tr><td align="right">Transitional disadvantaged</td><td align="right">Advantaged</td><td align="right">Disadvantaged</td><td align="right">Coal miners, share croppers</td></tr><tr><td align="right">Apparent disadvantaged</td><td align="right">Disadvantaged</td><td align="right">Disadvantaged</td><td align="right">Slaves, serfs</td></tr></table>
<h3 id="an_emerging_tension">An Emerging Tension</h3>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Advantage to Disadvantage - Working Thoughts</em>. <a href="https://jacobzelko.com/10092021131742-advantaged-to-disadvantaged">https://jacobzelko.com/10092021131742-advantaged-to-disadvantaged</a>. October 9 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 09 Oct 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Categorical Data Structures for Technical Computing  ]]>
  </title>
  <link> https://jacobzelko.com/10062021162335-ascets-paper/index.html </link>
  <guid> https://jacobzelko.com/10062021162335-ascets-paper/index.html </guid>
  <description>
    <![CDATA[  An overview on the applications of category theory to computing; introduces acsets, port graphs, and other applied category theory ideas.  ]]>
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<h1>Categorical Data Structures for Technical Computing</h1>
<p><strong>Date:</strong> October 6 2021</p>
<p><strong>Summary:</strong> An overview on the applications of category theory to computing; introduces acsets, port graphs, and other applied category theory ideas.</p>
<p><strong>Keywords:</strong> #bibliography #acsets #graph #theory #category  #archive</p>
<h1>Bibliography</h1>
<p>E. Patterson, O. Lynch, and J. Fairbanks, &quot;Categorical Data Structures for Technical Computing,&quot; arXiv:2106.04703 &#91;cs, math&#93;, Jun. 2021, Accessed: Sep. 27, 2021. &#91;Online&#93;. Available: http://arxiv.org/abs/2106.04703</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Definitions</li><li>Limitations of the Data Frame</li><li>Conclusions<ol><li>Use Cases for Acsets</li><li>Category Theory</li></ol></li><li>Discussion with Brighton Ancelin - October 6, 2021</li><li>Questions</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="definitions">Definitions</h3>
<p><strong>Combinatorial Data</strong> - data stored in a graph</p>
<p><strong>Attribute data</strong> - the data that would be put into a data frame</p>
<h3 id="limitations_of_the_data_frame">Limitations of the Data Frame</h3>
<ul>
<li><p>Does not record relationships between entities</p>
</li>
<li><p>Analogous to the <code>FOREIGN KEY</code> concept in SQL</p>
</li>
</ul>
<h3 id="conclusions">Conclusions</h3>
<h4 id="use_cases_for_acsets">Use Cases for Acsets</h4>
<ul>
<li><p>Act as a unifying abstract data type</p>
</li>
<li><p>Particularly useful for graphs and data frames, data structures</p>
</li>
<li><p>Enables creation of novel data structures</p>
</li>
</ul>
<h4 id="category_theory">Category Theory</h4>
<ul>
<li><p>The category theory for acsets is well understood</p>
</li>
<li><p>Opens possibility of implementation of</p>
</li>
</ul>
<pre><code class="language-julia">- Limits
- Colimits
- Functorial data migration</code></pre>
<h3 id="discussion_with_brighton_ancelin_-_october_6_2021">Discussion with Brighton Ancelin - October 6, 2021</h3>
<ul>
<li><p>Combinatorial data could be thought of the data that:</p>
</li>
</ul>
<pre><code class="language-julia">- Exists solely within a graph structure
- Defines vertices in a graph structure
- Defines edges in a graph structure
- Set of all vertices and set of all edges are isomorphic
	- As long as edge-vertex relationships are maintained</code></pre>
<ul>
<li><p>Attribute data has something concrete that describes it apart from a graph structure</p>
</li>
</ul>
<pre><code class="language-julia">- Encodes symmetries or relationships in data that are important to that data</code></pre>
<h3 id="questions">Questions</h3>
<ul>
<li><p>What are the &quot;new data structures&quot; that could be developed with this implementation</p>
</li>
<li><p>Why are attribute data combined in the same structure housing combinatorial data?</p>
</li>
<li><p>With the snippet of <code>add_part&#33;</code>, what is a &quot;part&quot;?</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Categorical Data Structures for Technical Computing</em>. <a href="https://jacobzelko.com/10062021162335-ascets-paper">https://jacobzelko.com/10062021162335-ascets-paper</a>. October 6 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Wed, 06 Oct 2021 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  Amortized Analysis  ]]>
  </title>
  <link> https://jacobzelko.com/10052021235121-amortized-analysis/index.html </link>
  <guid> https://jacobzelko.com/10052021235121-amortized-analysis/index.html </guid>
  <description>
    <![CDATA[  An overview of amortized analysis when addressing complexity  ]]>
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<h1>Amortized Analysis</h1>
<p><strong>Date:</strong> October 5 2021</p>
<p><strong>Summary:</strong> An overview of amortized analysis when addressing complexity</p>
<p><strong>Keywords:</strong> ##summary #complexity #amortized #analysis #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<ul>
<li><p>Amortized refers to the spread of costs over time.</p>
</li>
</ul>
<pre><code class="language-julia">- Considers all sequences of &#36;n&#36; operations
- Looks at average cost over number of operations</code></pre>
<ul>
<li><p>Looks at the sequence of \(n\) operations that gives the worst performance.</p>
</li>
</ul>
\[
\frac{\sum{Cost_{Operations}}}{\sum{Operations}}
\]
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Amortized Analysis</em>. <a href="https://jacobzelko.com/10052021235121-amortized-analysis">https://jacobzelko.com/10052021235121-amortized-analysis</a>. October 5 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 05 Oct 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Abstract Data Types  ]]>
  </title>
  <link> https://jacobzelko.com/10052021221736-abstract-data-types/index.html </link>
  <guid> https://jacobzelko.com/10052021221736-abstract-data-types/index.html </guid>
  <description>
    <![CDATA[  An overview and summary on what are abstract data types and what kinds exist  ]]>
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<h1>Abstract Data Types</h1>
<p><strong>Date:</strong> October 5 2021</p>
<p><strong>Summary:</strong> An overview and summary on what are abstract data types and what kinds exist</p>
<p><strong>Keywords:</strong> ##summary #data #data #abstract #types #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Definitions</li><li>Characteristics</li><li>Abstract Data Types<ol><li>List Abstract Data Type<ol><li>Minimum Required Operations</li></ol></li></ol></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="definitions">Definitions</h3>
<ul>
<li><p><strong>Abstract Data Types</strong> - the description of a data type based on its associated behaviors and operations.</p>
</li>
</ul>
<p>The details of Abstract Data Types are left vague &#40;i.e. abstract&#41; so that various languages can make their own implementations.</p>
<ul>
<li><p><strong>Data Structures</strong> - the concrete implementation details of a given data type.</p>
</li>
</ul>
<h3 id="characteristics">Characteristics</h3>
<ul>
<li><p>Allows an implementer to focus on the functionality requirements as opposed to the logistics in the language of implementation</p>
</li>
</ul>
<h3 id="abstract_data_types">Abstract Data Types</h3>
<h4 id="list_abstract_data_type">List Abstract Data Type</h4>
<p><strong>List Abstract Data Type</strong> - is a sequence of data values accessible via indexing.</p>
<h5 id="minimum_required_operations">Minimum Required Operations</h5>
<ul>
<li><p><code>addAtIndex&#40;int index, T data&#41;</code> - adds <code>data</code> of generic type <code>T</code> to a list at a specified <code>index</code> of type <code>int</code>.</p>
</li>
</ul>
<p>Any data at an index of <code>i</code> where it is \(\geq\) the value of <code>index</code>, has a new value of <code>i &#43; 1</code> to make space for the inserted <code>data</code>.</p>
<ul>
<li><p><code>removeAtIndex&#40;int index&#41;</code> - removes <code>data</code> at a specified <code>index</code> in a list.</p>
</li>
</ul>
<p>Any data with an index <code>i</code> where <code>i</code> is \(>\) <code>index</code> has a new index of <code>i - 1</code> to &quot;shrink&quot; the list of objects.</p>
<ul>
<li><p><code>get&#40;int index&#41;</code> - returns <code>data</code> at a specific <code>index</code>.</p>
</li>
<li><p><code>isEmpty&#40;&#41;</code> - returns if the list is empty or not.</p>
</li>
<li><p><code>clear&#40;&#41;</code> - empties list; resets list back to when it had no data.</p>
</li>
<li><p><code>size&#40;&#41;</code> - returns the number of <code>data</code> stored in list.</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Abstract Data Types</em>. <a href="https://jacobzelko.com/10052021221736-abstract-data-types">https://jacobzelko.com/10052021221736-abstract-data-types</a>. October 5 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 05 Oct 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Data Structures  ]]>
  </title>
  <link> https://jacobzelko.com/10012021003603-data-structures/index.html </link>
  <guid> https://jacobzelko.com/10012021003603-data-structures/index.html </guid>
  <description>
    <![CDATA[  An overview of asymptotic notation and time complexity  ]]>
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    <![CDATA[  
<h1>Data Structures</h1>
<p><strong>Date:</strong> September 28 2021</p>
<p><strong>Summary:</strong> An overview of asymptotic notation and time complexity</p>
<p><strong>Keywords:</strong> ##summary #data #structures #abstract #types #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Arrays</li><li>ArrayList<ol><li>Characteristics</li><li>Definitions</li><li>Requirements</li><li><a href="https://jacobzelko.com/10052021235121-amortized-analysis">Amortized Analysis</a></li></ol></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="arrays">Arrays</h3>
<p>Arrays are: 	- Statically allocated &#40;they are stored in memory and do not change; values can tho&#41; 	- Contiguous blocks of memory &#40;meaning that they are stored end to end in memory&#41;</p>
<p>They provide <a href="https://jacobzelko.com/09242021040445-asymptotic-notation">constant complexity</a> of \(\mathcal{O}(1)\) when accessing data at a specific index in memory.</p>
<p>They are of particular use in storing sequences of related items. However, they are not very efficient when dealing with dynamically changing sizes for elements. If you try to fit \(10\) objects into an array of size \(5\), the array will need to be expanded.</p>
<h3 id="arraylist">ArrayList</h3>
<h4 id="characteristics">Characteristics</h4>
<ul>
<li><p>A type of <a href="https://jacobzelko.com/10052021221736-abstract-data-types">List Abstract Data Type</a> backed by an array.</p>
</li>
</ul>
<pre><code class="language-julia">- Really just a wrapper around arrays</code></pre>
<ul>
<li><p>ArrayLists are expanded when reaching capacity</p>
</li>
</ul>
<pre><code class="language-julia">- Handled automatically by implementation
- Dynamically allocated via moving data to be copied when more space for the data is needed
	- This takes &#36;\mathcal&#123;O&#125;&#40;n&#41;&#36; time to do</code></pre>
<h4 id="definitions">Definitions</h4>
<ul>
<li><p><code>size</code> - the number of data &#40;non-null&#41; stored in an ArrayList.</p>
</li>
<li><p><code>capacity</code> - number of data that can be stored in an ArrayList without resize</p>
</li>
<li><p><strong>Amortized Analysis</strong> - looks at the cost over time rather than cost per add operation</p>
</li>
</ul>
<h4 id="requirements">Requirements</h4>
<ol>
<li><p>Data must be contiguous &#40;no gaps between data&#41;.</p>
</li>
<li><p>Data must be zero-aligned &#40;meaning that all values from zero to the end of the list, must be filled with data&#41;.</p>
</li>
<li><p>Size should be stored for efficiency.</p>
</li>
</ol>
<p><img src="10052021232522-array-list-requirements.png" alt="" /></p>
<blockquote>
<p><strong>NOTE:</strong> The empty blocks in the ArrayList sketch contain NULLs</p>
</blockquote>
<h4 id="a_hrefhttpsjacobzelkocom10052021235121-amortized-analysisamortized_analysis"><a href="https://jacobzelko.com/10052021235121-amortized-analysis">Amortized Analysis</a></h4>
<ul>
<li><p>Examples:</p>
</li>
</ul>
<pre><code class="language-julia">- Insertion:
	- Adding to the back of an ArrayList is &#36;\mathcal&#123;O&#125;&#40;1&#41;&#36;
	- Adding at an arbitrary position in the ArrayList is &#36;\mathcal&#123;O&#125;&#40;n&#41;&#36;
		- This is because when an element is inserted, the rest of the data in the list must be shifted to accommodate for the new data
- Removing examples:
	- Removing from back of ArrayList is &#36;\mathcal&#123;O&#125;&#40;1&#41;&#36;
	- Removing at arbitrary position in ArrayList is &#36;\mathcal&#123;O&#125;&#40;n&#41;&#36;</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Data Structures</em>. <a href="https://jacobzelko.com/10012021003603-data-structures">https://jacobzelko.com/10012021003603-data-structures</a>. September 28 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 28 Sep 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Asymptotic Notation  ]]>
  </title>
  <link> https://jacobzelko.com/09242021040445-asymptotic-notation/index.html </link>
  <guid> https://jacobzelko.com/09242021040445-asymptotic-notation/index.html </guid>
  <description>
    <![CDATA[  An overview of asymptotic notation and time complexity  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Asymptotic Notation</h1>
<p><strong>Date:</strong> September 28 2021</p>
<p><strong>Summary:</strong> An overview of asymptotic notation and time complexity</p>
<p><strong>Keywords:</strong> #asymptotic #notation #complexity #bigo #masters #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Big-O Notation<ol><li>Overview</li><li>Conventions</li><li>Constant Complexity: \(\mathcal{O}(1)\)</li><li>Linear Complexity: \(\mathcal{O}(n)\)</li><li>Logarithmic Complexity: \(\mathcal{O}(log(n))\)</li><li>Exercises</li></ol></li><li>Amortized Analysis</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<ul>
<li><p>Complexity of an algorithm is often calculated by counting primitive operations</p>
</li>
<li><p>Primitive operations:</p>
</li>
</ul>
<pre><code class="language-julia">- Basic memory and reference management
- Simple comparisons
- Basic arithmetic
	- Addition
	- Subtraction
	- Multiplication
	- Division
	- Modulo</code></pre>
<h3 id="big-o_notation">Big-O Notation</h3>
<h4 id="overview">Overview</h4>
<ul>
<li><p>Big-O &#40;denoted as \(\mathcal{O}\)&#41; refers to the most accurate worst case analysis with regards to either</p>
</li>
</ul>
<pre><code class="language-julia">- Execution time
- Space used &#40;in memory or disk&#41;</code></pre>
<ul>
<li><p>It always assumes the maximum number of iterations</p>
</li>
</ul>
<h4 id="conventions">Conventions</h4>
<ul>
<li><p>Constants get dropped from \(\mathcal{O}\) notation as it is small compared to infinity</p>
</li>
</ul>
<p>Example: </p>
\[
\mathcal{O}(5n) \rightarrow \mathcal{O}(n)
\]
<ul>
<li><p>Lower order terms get dropped in \(\mathcal{O}\) notation for the reason as before</p>
</li>
</ul>
<p>Example:</p>
\[
\mathcal{O}(n^{2} + 1000n - 3) \rightarrow \mathcal{O}(n^{2})
\]
<ul>
<li><p>Dropping constants theoretically is possible because constants do not grow towards infinity</p>
</li>
<li><p>In practice however, these constants can affect practical outcomes of algorithms</p>
</li>
</ul>
<h4 id="constant_complexity_mathcalo1">Constant Complexity: \(\mathcal{O}(1)\)</h4>
<ul>
<li><p>Performance does not scale with input size</p>
</li>
<li><p>Example is having a list and returning the first item in the list:</p>
</li>
</ul>
<pre><code class="language-julia">mylist &#61; &#91;1:5...&#93;
first&#40;mylist&#41;</code></pre>
<h4 id="linear_complexity_mathcalon">Linear Complexity: \(\mathcal{O}(n)\)</h4>
<ul>
<li><p>Performance does scale with size</p>
</li>
<li><p>Example is summing all elements in an array:</p>
</li>
</ul>
<pre><code class="language-julia">mylist &#61; &#91;1:5...&#93;
summed_values &#61; sum&#40;mylist&#41;</code></pre>
<h4 id="logarithmic_complexity_mathcalologn">Logarithmic Complexity: \(\mathcal{O}(log(n))\)</h4>
<ul>
<li><p>Performance scales logarithmically with input size</p>
</li>
<li><p>Base doesn&#39;t matter due to change of base:</p>
</li>
</ul>
\[
log_{m}(n) = \frac{log_{2}(n)}{log_{2}(m)} = Clog_{2}(n) \rightarrow \mathcal{O}(log_{m}(n)) \rightarrow \mathcal{O}(log(n))
\]
<ul>
<li><p>It can intuitively be thought of the running time is proportional to the \(n\) <a href="https://stackoverflow.com/a/2307307">Stack Overflow Explanation</a></p>
</li>
<li><p>Another way to think about it is that the time goes up linearly while \(n\) increases exponentially <a href="https://stackoverflow.com/a/2307330">Stack Overflow Explanation</a></p>
</li>
</ul>
<p>An example of this behavior is here:</p>
<table><tr><th align="right">Time &#40;\(t\)&#41;</th><th align="right">\(n\)</th></tr><tr><td align="right">0</td><td align="right">1</td></tr><tr><td align="right">1</td><td align="right">10</td></tr><tr><td align="right">2</td><td align="right">100</td></tr><tr><td align="right">3</td><td align="right">1000</td></tr><tr><td align="right">4</td><td align="right">10000</td></tr><tr><td align="right">5</td><td align="right">100000</td></tr></table>
<p>Where the proportion can be stated as:</p>
\[
f(n) = log_{10}(n^{t})
\]
<h4 id="exercises">Exercises</h4>
<p><em>The following exercises can be found <a href="https://www.geeksforgeeks.org/practice-questions-time-complexity-analysis/">here</a></em></p>
<ol>
<li><p>What is the time and space complexity of:</p>
</li>
</ol>
<pre><code class="language-julia">a &#61; 0
i &#61; 0while i &lt; N
	a &#61; a &#43; rand&#40;1&#41;
	i &#43;&#61; 1
end
b &#61; 0
j &#61; 0while j &lt; M
	b &#61; b &#43; rand&#40;1&#41;
	j &#43;&#61; 1
end</code></pre>
<p>Answer: \(\mathcal{O}(N + M), \mathcal{O}(1)\)</p>
<p>Explanation: Since we measure complexity by worse case scenario of primitive operations ran, there could be \(N\) and \(M\) operations executed in this code. As no additional space is being utilized, space complexity is constant as no new variables are being defined.</p>
<ol start="2">
<li><p>What is the time complexity of:</p>
</li>
</ol>
<pre><code class="language-julia">a &#61; 0
i &#61; 0
j &#61; Nwhile i &lt; N
	while j &gt; i
		a &#61; a &#43; i &#43; j
		j -&#61; 1
	end
	i &#43;&#61; 1
end</code></pre>
<p>Answer: \(\mathcal{O}(N \cdot N)\)</p>
<p>Explanation: Both loops are dependent on \(N\) so both loops, iterate \(N\) times, therefore resulting in a time complexity of \(\mathcal{O}(N \cdot N)\)</p>
<ol start="3">
<li><p>What is the time complexity of the following code:</p>
</li>
</ol>
<pre><code class="language-julia">i &#61; N / 2
k &#61; 0while i &lt;&#61; N
	j &#61; 2
	while j &lt;&#61; N
		k &#61; k &#43; N / 2
		j *&#61; 2
	end
	i &#43;&#61; 1
end</code></pre>
<p>Answer: \(\mathcal{O}(n \cdot \log(n))\)</p>
<p>Explanation: As \(n\) continues to increase, the variable, \(k\) continues to loosely grow more than exponential. Furthermore, there are, \(\frac{n}{2}\) primitive steps in the outer loop such that the total time complexity would be \(\mathcal{O}(\frac{n}{2} \cdot \log{n})\) which is then simplified to \(\mathcal{O}(n \cdot \log(n))\) I got this wrong initially because I did not account for the outer loop contributing a time complexity of \(\frac{n}{2}\).</p>
<ol start="4">
<li><p>What does it mean when we say that algorithm X is asymptotically more efficient than Y?</p>
</li>
</ol>
<p>Answer: Algorithm X will always be better for large inputs</p>
<p>Explanation: When we consider an asymptote in terms of an algorithm, we also consider that algorithms &quot;growth&quot; over time. Meaning, that if you have some algorithm that is efficient at an asymptote, by nature of asymptotic analysis, that means it is &quot;good&quot; in the worst case scenario of that algorithm.</p>
<p>Addendum: I got this wrong when thinking about asymptotic notation as I failed to consider growth. I thought X would be better for all inputs to that algorithm but that would not be so in the case of possibly a smaller input to X.</p>
<ol start="5">
<li><p>What is the time complexity of the following code:</p>
</li>
</ol>
<pre><code class="language-julia">a &#61; 0
i &#61; Nwhile i &gt; 0
	a &#43;&#61; i
	i /&#61; 2
end</code></pre>
<p>Answer: \(\mathcal{O}(\log{n})\)</p>
<p>Explanation: There is a direct proportional relationship between \(n\) and the final output.</p>
<ol start="6">
<li><p>What best describes the useful criterion for comparing the efficiency of algorithms?</p>
</li>
</ol>
<p>Answer: Time and Memory</p>
<p>Explanation: Time dictates how long a program will evaluate for and memory dictates how much a program can evaluate</p>
<ol start="7">
<li><p>How is time complexity measured?</p>
</li>
</ol>
<p>Answer: By counting the number of primitive operations in an algorithm on a given input size.</p>
<p>Explanation: Each primitive operation is generally assumed to evaluate at the cost of &quot;one&quot; for each operation.</p>
<ol start="8">
<li><p>What will be the time complexity of the following code?</p>
</li>
</ol>
<p>&lt;&#33;–NOTE: SKIPPING FOR NOW–&gt;</p>
<pre><code class="language-julia">i &#61; 0 
while i &lt; N
	i *&#61; k
end</code></pre>
<ol start="9">
<li><p>What will be the time complexity of the following code?</p>
</li>
</ol>
<p>&lt;&#33;–NOTE: SKIPPING FOR NOW–&gt;</p>
<pre><code class="language-julia">value &#61; 0
i &#61; 0
j &#61; 0while i &lt; n
	while j &lt; i
		value &#43;&#61; 1
		j &#43;&#61; 1
	end
	i &#43;&#61; 1
end</code></pre>
<ol start="10">
<li><p>Algorithm A and B have a worst-case running time of \(\mathcal{O}(n)\) and \(\mathcal{O}(logn)\), respectively. Therefore, algorithm B always runs faster than algorithm A.</p>
</li>
</ol>
<p>Answer: False</p>
<p>Explanation: Algorithm A could be faster on smaller inputs as compared to algorithm B</p>
<h3 id="amortized_analysis">Amortized Analysis</h3>
<p>See <a href="https://jacobzelko.com/10052021235121-amortized-analysis">note here for details</a></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Asymptotic Notation</em>. <a href="https://jacobzelko.com/09242021040445-asymptotic-notation">https://jacobzelko.com/09242021040445-asymptotic-notation</a>. September 28 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 28 Sep 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  All Of Us Initiative  ]]>
  </title>
  <link> https://jacobzelko.com/09202021224748-all-of-us/index.html </link>
  <guid> https://jacobzelko.com/09202021224748-all-of-us/index.html </guid>
  <description>
    <![CDATA[  An overview of the All Of Us Research Dataset and Program  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>All Of Us Initiative</h1>
<p><strong>Date:</strong> September 20 2021</p>
<p><strong>Summary:</strong> An overview of the All Of Us Research Dataset and Program</p>
<p><strong>Keywords:</strong> ##dataset #allofus #minority #archive</p>
<h1>Bibliography</h1>
<p>The All of Us Research Program is supported by the National Institutes of Health, Office of the Director: Regional Medical Centers: 1 OT2 OD026549; 1 OT2 OD026554; 1 OT2 OD026557; 1 OT2 OD026556; 1 OT2 OD026550; 1 OT2 OD 026552; 1 OT2 OD026553; 1 OT2 OD026548; 1 OT2 OD026551; 1 OT2 OD026555; IAA #: AOD 16037; Federally Qualified Health Centers: HHSN 263201600085U; Data and Research Center: 5 U2C OD023196; Biobank: 1 U24 OD023121; The Participant Center: U24 OD023176; Participant Technology Systems Center: 1 U24 OD023163; Communications and Engagement: 3 OT2 OD023205; 3 OT2 OD023206; and Community Partners: 1 OT2 OD025277; 3 OT2 OD025315; 1 OT2 OD025337; 1 OT2 OD025276. In addition, the All of Us Research Program would not be possible without the partnership of its participants.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Provenance</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="provenance">Provenance</h3>
<p>The Supported by the National Institutes of Health</p>
<p>Aggregates must be &gt;&#61; 20 people</p>
<p>Prioritizes ethnic minority groups</p>
<p>Broken into three tiers: </p>
<ol>
<li><p>Public</p>
</li>
<li><p>Registered</p>
</li>
<li><p>Controlled</p>
</li>
</ol>
<p>Training needed for 1 &amp; 2</p>
<p>Wants to work with 1 million &#43; volunteers across the US. Focuses on underrepresented populations.</p>
<p>All participants are invited to complete surveys about health and lifestyle. Collects additional information on Electronic Health Records, Physical Measurements &#40;i.e. height, weight, BMI, waist circumference, Hip circumference, blood pressure, and heart rate; bio samples such as blood, urine, and saliva; and wearable data such as heart rate and blood pressure</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>All Of Us Initiative</em>. <a href="https://jacobzelko.com/09202021224748-all-of-us">https://jacobzelko.com/09202021224748-all-of-us</a>. September 20 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Mon, 20 Sep 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  What Are Bundles or Groups?  ]]>
  </title>
  <link> https://jacobzelko.com/08052021202559-bundles-grouping/index.html </link>
  <guid> https://jacobzelko.com/08052021202559-bundles-grouping/index.html </guid>
  <description>
    <![CDATA[  Explaining what bundles or groups are in the context of All-Payer Claims Databases  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>What Are Bundles or Groups?</h1>
<p><strong>Date:</strong> August 5 2021</p>
<p><strong>Summary:</strong> Explaining what bundles or groups are in the context of All-Payer Claims Databases</p>
<p><strong>Keywords:</strong> #apcd #bundles #groups #groupers #definition #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>Bundles are when you group together medical services to a single price. Often, these bundles proprietary to vendors. To patients, the advantage to this is knowing where costs break down and to find who is charging the least. - Megan Denham</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Are Bundles or Groups?</em>. <a href="https://jacobzelko.com/08052021202559-bundles-grouping">https://jacobzelko.com/08052021202559-bundles-grouping</a>. August 5 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Thu, 05 Aug 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  My Note Templates  ]]>
  </title>
  <link> https://jacobzelko.com/08032021134232-notes-template/index.html </link>
  <guid> https://jacobzelko.com/08032021134232-notes-template/index.html </guid>
  <description>
    <![CDATA[  The template I use for taking notes  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>My Note Templates</h1>
<p><strong>Date:</strong> August 3 2021</p>
<p><strong>Summary:</strong> The template I use for taking notes</p>
<p><strong>Keywords:</strong> #notes #template #archive #blog</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Example of Actual Note</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>This is an <a href="https://jacobzelko.com/04172022033744-open-knowledge-standard">example implementation of the Open Knowledge Standard</a> I use when taking notes in Markdown:</p>
<pre><code class="language-markdown"># &#91;Title&#93;**Date:** &#91;DATE&#93;**Summary:** &#91;ONE SENTENCE SUMMARY&#93;**Keywords:** &#91;KEYWORDS PREPENDED BY #. EXAMPLE: #healthcare&#93;## Note Linked From&#91;REFERENCE TO WHERE THE NOTE WAS LINKED FROM&#93;## Bibliography&#91;BIBLIOGRAPHIC REFERENCE FOR WHERE YOU GOT THE INFORMATION&#93;## Notes&#91;CONTENT OF NOTE&#93;## References:&#91;ADDITIONAL REFERENCES USED IN NOTE&#93;</code></pre>
<h3 id="example_of_actual_note">Example of Actual Note</h3>
<p>What follows is an actual note in my knowledge management system:</p>
<pre><code class="language-markdown"># Normal Science**Date:** May 22 2022**Summary:** An overview of what normal science is according to Thomas Kuhn.**Keywords:** #normal #science #characteristics #work #archive## BibliographyT. S. Kuhn and I. Hacking, The Structure of Scientific Revolutions, Fourth edition. Chicago ; London: The University of Chicago Press, 2012.## Notes### What Is &quot;Normal Science&quot;?According to Kuhn, *normal science*, is research based on past scientific accomplishments that are considered the foundation for that area of investigation. 
Generally, this is the area where most scientists spend their time. 
The research done in normal science can be theoretical or empirical.In the book, Kuhn referred to this as &quot;mop-up work&quot; and that this mopping up or &quot;filling out&quot; of science is what most scientists do.
Although language such as &quot;mop-up&quot; work can make one think that Kuhn was being pejorative to these so-called &quot;scut scientists&quot;, he did not intend it so. 
In later versions of this book, he made a response to this point of confusion and clarified that this work still is fascinating and crucial in many ways to the advancement of science.#### What Are the Characteristics of Normal Science?An important aspect of normal science is that it does not engage with or seek out anything new. 
The invention of theories, development of new phenomena - anything abnormal - is not part of normal science. 
Novelty is abhorrent and antithetical to normal science.Aside from this fundamental aspect of normal science, Kuhn posited that there are three general areas of research in normal science. 
He emphasized that they do not always hold or are always discrete from one another:1. Investigating questions around the fundamental facts found in a specific domain.
2. Questions that are predicted and expected to have answers existing within an already existing research domain.
3. Further articulating the fundamental facts held in a given domain.## References</code></pre>
<p>NOTE: As a matter of style, I tend to put sentences each on their own line. This helps me with being able to more quickly pull pieces of information across my knowledge management system.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>My Note Templates</em>. <a href="https://jacobzelko.com/08032021134232-notes-template">https://jacobzelko.com/08032021134232-notes-template</a>. August 3 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 03 Aug 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Recommendations for Creating a New All-Payers Claim Database  ]]>
  </title>
  <link> https://jacobzelko.com/08032021211415-apcd-recommendations/index.html </link>
  <guid> https://jacobzelko.com/08032021211415-apcd-recommendations/index.html </guid>
  <description>
    <![CDATA[  Recommendations for Creating a New All-Payers Claim Database  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Recommendations for Creating a New All-Payers Claim Database</h1>
<p><strong>Date:</strong> August 3 2021</p>
<p><strong>Summary:</strong> Recommendations for Creating a New All-Payers Claim Database</p>
<p><strong>Keywords:</strong> #apcd #recommendation #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>General Recommendations</li><li>State Specific Recommendations</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="general_recommendations">General Recommendations</h3>
<p><a href="https://jacobzelko.com/08032021205910-establish-apcd">Organizers should appeal to policymakers and primary users by showing data-driven decision making on key issues</a></p>
<h3 id="state_specific_recommendations">State Specific Recommendations</h3>
<ul>
<li><p><a href="https://jacobzelko.com/08032021211753-virginia-apcd">Virginia</a></p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Recommendations for Creating a New All-Payers Claim Database</em>. <a href="https://jacobzelko.com/08032021211415-apcd-recommendations">https://jacobzelko.com/08032021211415-apcd-recommendations</a>. August 3 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 03 Aug 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Virginia All-Payers Claim Database  ]]>
  </title>
  <link> https://jacobzelko.com/08032021211753-virginia-apcd/index.html </link>
  <guid> https://jacobzelko.com/08032021211753-virginia-apcd/index.html </guid>
  <description>
    <![CDATA[  An overview of the Virginia All-Payers Claim Database  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Virginia All-Payers Claim Database</h1>
<p><strong>Date:</strong> August 3 2021</p>
<p><strong>Summary:</strong> An overview of the Virginia All-Payers Claim Database</p>
<p><strong>Keywords:</strong> #apcd #virginia ##summary #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Recommendations</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="recommendations">Recommendations</h3>
<ul>
<li><p>Using standards made with stakeholders significantly increased use of the All Payer Claims Database</p>
</li>
<li><p>Promote ability to analyze big claims data at population level.</p>
</li>
</ul>
<blockquote>
<p>IDEA: This really seems like we could off load a lot of processing to other tools.</p>
</blockquote>
<p>No need to reinvent the wheel when I think we have a lot of the tools here like in OHDSI.</p>
<ul>
<li><p>Actively review data quality impacts.</p>
</li>
</ul>
<blockquote>
<p>QUESTION: I wonder what they mean by data quality metrics?</p>
</blockquote>
<ul>
<li><p>Develop and adhere to a regular data update schedule</p>
</li>
<li><p>Consider using the Common Data Layout</p>
</li>
<li><p>Know about ERISA limitations on private self-insured employer plans</p>
</li>
<li><p>Get federal matching funds to support operation.</p>
</li>
<li><p>Know what All-Payers Claim Database data can do well and what it cannot.</p>
</li>
</ul>
<p>&#40;The Commonwealth Fund&#41;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Virginia All-Payers Claim Database</em>. <a href="https://jacobzelko.com/08032021211753-virginia-apcd">https://jacobzelko.com/08032021211753-virginia-apcd</a>. August 3 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 03 Aug 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Tools for Improving Health Care Value Part 1: How States Establish an APCD and Make it Functional  ]]>
  </title>
  <link> https://jacobzelko.com/08032021205910-establish-apcd/index.html </link>
  <guid> https://jacobzelko.com/08032021205910-establish-apcd/index.html </guid>
  <description>
    <![CDATA[  A summary paper detailing how to establish an All-Payers Claim Database with recommendations  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Tools for Improving Health Care Value Part 1: How States Establish an APCD and Make it Functional</h1>
<p><strong>Date:</strong> August 3 2021</p>
<p><strong>Summary:</strong> A summary paper detailing how to establish an All-Payers Claim Database with recommendations</p>
<p><strong>Keywords:</strong> #apcd #commonwealth #fund #transparency #recommendations  #archive</p>
<h1>Bibliography</h1>
<p>The Commonwealth Fund. 2020. State All-Payer Claims Databases: Tools for Improving Health Care Value, Part 1 — How States Establish an APCD and Make It Functional.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Summary</li><li>Intended Uses of All-Payers Claim Databases</li><li>Recommendations for States in Creating All-Payers Claim Databases</li><li>Potential Ways an All-Payers Claim Database Can Be Used</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="summary">Summary</h3>
<p>This was a summary paper detailing how to establish an All-Payers Claim Database with recommendations from 8 states across the US with All-Payer Claims Databases. It was a high value paper&#33; Lots of great insights in this document with good summary insights from across the states interviewed which were:</p>
<ul>
<li><p>Arkansas</p>
</li>
<li><p>Colorado</p>
</li>
<li><p>Maine</p>
</li>
<li><p>Minnesota</p>
</li>
<li><p>New Hampshire</p>
</li>
<li><p>Utah</p>
</li>
<li><p>Virginia</p>
</li>
<li><p>Wisconsin</p>
</li>
</ul>
<p>However, the general insights were rather vague about what states actually <em>did</em> with their APCD. This paper gains even more benefit when read in conjunction with <a href="https://jacobzelko.com/08062021145920-benefits-state-apcds">Part 2 of this series</a>.</p>
<h3 id="intended_uses_of_all-payers_claim_databases">Intended Uses of All-Payers Claim Databases</h3>
<p><strong>Information transparency</strong> is disclosing and highlighting variation in:</p>
<ul>
<li><p>utilization</p>
</li>
<li><p>cost</p>
</li>
<li><p>service quality</p>
</li>
</ul>
<p>Enables employers to choose value-based care. Consumers will know what options they have.</p>
<h3 id="recommendations_for_states_in_creating_all-payers_claim_databases">Recommendations for States in Creating All-Payers Claim Databases</h3>
<ul>
<li><p><a href="https://jacobzelko.com/08032021211415-apcd-recommendations">General Recommendations</a></p>
</li>
<li><p><a href="https://jacobzelko.com/08032021211753-virginia-apcd">Virginia All-Payers Claim Database</a></p>
</li>
</ul>
<h3 id="potential_ways_an_all-payers_claim_database_can_be_used">Potential Ways an All-Payers Claim Database Can Be Used</h3>
<p>An All-Payers Claim Database can be used as a state oversight tool for:</p>
<ol>
<li><p>Insurance markets</p>
</li>
<li><p>Public coverage programs</p>
</li>
<li><p>Public health.</p>
</li>
</ol>
<p>It can also be used as a research tool for health care research and system improvement</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Tools for Improving Health Care Value Part 1: How States Establish an APCD and Make it Functional</em>. <a href="https://jacobzelko.com/08032021205910-establish-apcd">https://jacobzelko.com/08032021205910-establish-apcd</a>. August 3 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 03 Aug 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Goals of OHDSI  ]]>
  </title>
  <link> https://jacobzelko.com/07282021185354-ohdsi-goals/index.html </link>
  <guid> https://jacobzelko.com/07282021185354-ohdsi-goals/index.html </guid>
  <description>
    <![CDATA[  The priorities and goals of OHDSI  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Goals of OHDSI</h1>
<p><strong>Date:</strong> July 28 2021</p>
<p><strong>Summary:</strong> The priorities and goals of OHDSI</p>
<p><strong>Keywords:</strong> #ohdsi #goals #archive</p>
<h1>Bibliography</h1>
<p>EHDEN Academy</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>The goals of OHDSI are to:</p>
<ol>
<li><p>Facilitate an open science community across discipline and stakeholder groups</p>
</li>
<li><p>Establish open community data standards</p>
</li>
<li><p>Create international collaboration</p>
</li>
<li><p>Make end to end solutions of translating observational data to reliable evidence</p>
</li>
<li><p>Have fun&#33;</p>
</li>
</ol>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Goals of OHDSI</em>. <a href="https://jacobzelko.com/07282021185354-ohdsi-goals">https://jacobzelko.com/07282021185354-ohdsi-goals</a>. July 28 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Wed, 28 Jul 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  The Origins of the Observational Medical Outcomes Partnership &#40;OMOP&#41;  ]]>
  </title>
  <link> https://jacobzelko.com/07282021181744-origins-omop/index.html </link>
  <guid> https://jacobzelko.com/07282021181744-origins-omop/index.html </guid>
  <description>
    <![CDATA[  The origins of the observational medical outcomes partnership  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>The Origins of the Observational Medical Outcomes Partnership &#40;OMOP&#41;</h1>
<p><strong>Date:</strong> July 28 2021</p>
<p><strong>Summary:</strong> The origins of the observational medical outcomes partnership</p>
<p><strong>Keywords:</strong> #omop #medical #outcomes #partnership #observational #archive</p>
<h1>Bibliography</h1>
<p>EHDEN Academy</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>The Observational Medical Outcomes Partnership &#40;OMOP&#41; was created in 2009 to reach consensus on data types, study designs, and privacy concerns while sharing data.</p>
<p>The ground truth for OMOP investigations were positive and negative tests regarding drugs. Examples of positive controls were:</p>
<pre><code class="language-julia">- Events on drug label warnings/precautions
- If it was a causative agenda</code></pre>
<p>Examples of negative controls were:</p>
<pre><code class="language-julia">- Events not listed on drug labels
- No powered studies with evidence of potential positive association</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>The Origins of the Observational Medical Outcomes Partnership &#40;OMOP&#41;</em>. <a href="https://jacobzelko.com/07282021181744-origins-omop">https://jacobzelko.com/07282021181744-origins-omop</a>. July 28 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Wed, 28 Jul 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Exploring Drug Concepts by Name  ]]>
  </title>
  <link> https://jacobzelko.com/07282021211226-drug-concepts/index.html </link>
  <guid> https://jacobzelko.com/07282021211226-drug-concepts/index.html </guid>
  <description>
    <![CDATA[  How to explore drugs in an OHDSI table by name  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Exploring Drug Concepts by Name</h1>
<p><strong>Date:</strong> July 28 2021</p>
<p><strong>Summary:</strong> How to explore drugs in an OHDSI table by name</p>
<p><strong>Keywords:</strong> #ohdsi #sql #drug #name #r  #archive</p>
<h1>Bibliography</h1>
<p>EHDEN Academy</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Setting Up Environment<ol><li>Installation Requirements</li><li>Making Connection to Eunomia</li><li>Querying Drugs by Name</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="setting_up_environment">Setting Up Environment</h3>
<h4 id="installation_requirements">Installation Requirements</h4>
<p>We install the OHDSI dummy database, <code>Eunomia</code>, to write our queries:</p>
<pre><code class="language-R">install.packages&#40;c&#40;&quot;SqlRender&quot;, &quot;DatabaseConnector&quot;, &quot;remotes&quot;&#41;&#41;
remotes::install_github&#40;&quot;ohdsi/Eunomia&quot;, ref &#61; &quot;v1.0.0&quot;&#41;</code></pre>
<p>We will also install the package <code>knitr</code> for viewing and working with resulting tables easily:</p>
<pre><code class="language-R">install.packages&#40;&quot;knitr&quot;&#41;</code></pre>
<h4 id="making_connection_to_eunomia">Making Connection to Eunomia</h4>
<p>Here we load the <code>DatabaseConnector</code> library to connect to <code>Eunomia</code>: </p>
<pre><code class="language-R">library&#40;&#39;DatabaseConnector&#39;&#41;
library&#40;&#39;knitr&#39;&#41;</code></pre>
<p>And set a connection to Eunomia</p>
<pre><code class="language-R">connectionDetails &lt;-Eunomia::getEunomiaConnectionDetails&#40;&#41;
connection &lt;- connect&#40;connectionDetails&#41;</code></pre>
<h4 id="querying_drugs_by_name">Querying Drugs by Name</h4>
<p>First we need to write our SQL query as follows:</p>
<pre><code class="language-R">sql &lt;-	&quot;
	SELECT * FROM @cdm.concept WHERE lower&#40;concept_name&#41; &#61; &#39;warfarin&#39;
	&quot;</code></pre>
<p>And then we can run our SQL query and return the results as follows:</p>
<pre><code class="language-julia">result &lt;- renderTranslateQuerySql&#40;connection, sql,cdm &#61;&quot;main&quot;&#41;
knitr::kable&#40;result&#41;</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Exploring Drug Concepts by Name</em>. <a href="https://jacobzelko.com/07282021211226-drug-concepts">https://jacobzelko.com/07282021211226-drug-concepts</a>. July 28 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Wed, 28 Jul 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Exploring Ancestors and Descendants of a Concept  ]]>
  </title>
  <link> https://jacobzelko.com/07282021202459-exploring-ancestors-concept/index.html </link>
  <guid> https://jacobzelko.com/07282021202459-exploring-ancestors-concept/index.html </guid>
  <description>
    <![CDATA[  How to explore ancestors and descendants of OHDSI concepts  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Exploring Ancestors and Descendants of a Concept</h1>
<p><strong>Date:</strong> July 28 2021</p>
<p><strong>Summary:</strong> How to explore ancestors and descendants of OHDSI concepts</p>
<p><strong>Keywords:</strong> #ohdsi #sql #ancestor #descendant #r  #archive</p>
<h1>Bibliography</h1>
<p>EHDEN Academy</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Setting Up Environment<ol><li>Installation Requirements</li><li>Making Connection to Eunomia</li><li>Querying Ancestors from OHDSI</li><li>Querying Descendants from OHDSI</li></ol></li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="setting_up_environment">Setting Up Environment</h3>
<h4 id="installation_requirements">Installation Requirements</h4>
<p>We install the OHDSI dummy database, <code>Eunomia</code>, to write our queries:</p>
<pre><code class="language-R">install.packages&#40;c&#40;&quot;SqlRender&quot;, &quot;DatabaseConnector&quot;, &quot;remotes&quot;&#41;&#41;
remotes::install_github&#40;&quot;ohdsi/Eunomia&quot;, ref &#61; &quot;v1.0.0&quot;&#41;</code></pre>
<p>We will also install the package <code>knitr</code> for viewing and working with resulting tables easily:</p>
<pre><code class="language-R">install.packages&#40;&quot;knitr&quot;&#41;</code></pre>
<h4 id="making_connection_to_eunomia">Making Connection to Eunomia</h4>
<p>Here we load the <code>DatabaseConnector</code> library to connect to <code>Eunomia</code>: </p>
<pre><code class="language-R">library&#40;&#39;DatabaseConnector&#39;&#41;</code></pre>
<p>And set a connection to Eunomia</p>
<pre><code class="language-R">connectionDetails &lt;-Eunomia::getEunomiaConnectionDetails&#40;&#41;
connection &lt;- connect&#40;connectionDetails&#41;</code></pre>
<h4 id="querying_ancestors_from_ohdsi">Querying Ancestors from OHDSI</h4>
<p>First we need to write our SQL query as follows:</p>
<pre><code class="language-R">sql &lt;-	&quot;
	SELECT max_levels_of_separation, concept.*
	FROM @cdm.concept_ancestor
	JOIN concept ON ancestor_concept_id &#61; concept_id
	WHERE descendant_concept_id &#61; 313217
	ORDER BY max_levels_of_separation
	&quot;</code></pre>
<p>And then we can run our SQL query and return the results as follows:</p>
<pre><code class="language-julia">result &lt;- renderTranslateQuerySql&#40;connection, sql,cdm &#61;&quot;main&quot;&#41;
knitr::kable&#40;result&#41;</code></pre>
<h4 id="querying_descendants_from_ohdsi">Querying Descendants from OHDSI</h4>
<p>First we need to write our SQL query as follows:</p>
<pre><code class="language-R">sql &lt;-	&quot;
	SELECT max_levels_of_separation, concept.*
	FROM @cdm.concept_ancestor
	JOIN concept ON descendant_concept_id &#61; concept_id
	WHERE descendant_concept_id &#61; 4478217
	ORDER BY max_levels_of_separation
	&quot;</code></pre>
<p>And then we can run our SQL query and return the results as follows:</p>
<pre><code class="language-julia">result &lt;- renderTranslateQuerySql&#40;connection, sql,cdm &#61;&quot;main&quot;&#41;
knitr::kable&#40;result&#41;</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Exploring Ancestors and Descendants of a Concept</em>. <a href="https://jacobzelko.com/07282021202459-exploring-ancestors-concept">https://jacobzelko.com/07282021202459-exploring-ancestors-concept</a>. July 28 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Wed, 28 Jul 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  United States Drug Approval Process  ]]>
  </title>
  <link> https://jacobzelko.com/07282021174136-drug-approval/index.html </link>
  <guid> https://jacobzelko.com/07282021174136-drug-approval/index.html </guid>
  <description>
    <![CDATA[  How novel drugs are approved in the United States  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>United States Drug Approval Process</h1>
<p><strong>Date:</strong> July 28 2021</p>
<p><strong>Summary:</strong> How novel drugs are approved in the United States</p>
<p><strong>Keywords:</strong> #drug #approval #fda #food #drug #administration  #archive</p>
<h1>Bibliography</h1>
<p>EHDEN Academy</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<ol>
<li><p>Pharmaceutical company develops drug</p>
</li>
<li><p>Gets tested in clinical trials</p>
</li>
<li><p>Results are submitted to the US Food and Drug Administration</p>
</li>
<li><p>After US Food and Drug Administration approval, drug can be sold</p>
</li>
<li><p>If <a href="https://jacobzelko.com/07282021175202-fda-risk-prevention">negative side effects discovered</a>, FDA takes action</p>
</li>
</ol>
<pre><code class="language-julia">1. Apply warning label to drug2. Possibly withdraws product</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>United States Drug Approval Process</em>. <a href="https://jacobzelko.com/07282021174136-drug-approval">https://jacobzelko.com/07282021174136-drug-approval</a>. July 28 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Wed, 28 Jul 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Observational Health Data Sciences and Informatics &#40;OHDSI&#41; Origins  ]]>
  </title>
  <link> https://jacobzelko.com/07282021184510-ohdsi-background/index.html </link>
  <guid> https://jacobzelko.com/07282021184510-ohdsi-background/index.html </guid>
  <description>
    <![CDATA[  Origins of OHDSI initiative  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Observational Health Data Sciences and Informatics &#40;OHDSI&#41; Origins</h1>
<p><strong>Date:</strong> July 28 2021</p>
<p><strong>Summary:</strong> Origins of OHDSI initiative</p>
<p><strong>Keywords:</strong> #ohdsi #origins #archive</p>
<h1>Bibliography</h1>
<p>EHDEN Academy</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<ul>
<li><p>Was formed by <a href="https://jacobzelko.com/07282021181744-origins-omop">OMOP</a></p>
</li>
<li><p>Based out of Columbia University</p>
</li>
</ul>
<pre><code class="language-julia">- Rose out of distrust with pharma-funded institutions</code></pre>
<ul>
<li><p>International initiative for interdisciplinary, observational-based problem solving</p>
</li>
</ul>
<p>It has a clearly defined set of <a href="https://jacobzelko.com/07282021185354-ohdsi-goals">goals</a> to encourage international collaboration on observational health research.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Observational Health Data Sciences and Informatics &#40;OHDSI&#41; Origins</em>. <a href="https://jacobzelko.com/07282021184510-ohdsi-background">https://jacobzelko.com/07282021184510-ohdsi-background</a>. July 28 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Wed, 28 Jul 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  FDA Amendment Act  ]]>
  </title>
  <link> https://jacobzelko.com/07282021175202-fda-risk-prevention/index.html </link>
  <guid> https://jacobzelko.com/07282021175202-fda-risk-prevention/index.html </guid>
  <description>
    <![CDATA[  How the FDA addressed concerns about drug recalls  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>FDA Amendment Act</h1>
<p><strong>Date:</strong> July 28 2021</p>
<p><strong>Summary:</strong> How the FDA addressed concerns about drug recalls</p>
<p><strong>Keywords:</strong> #food #drug #administration #omop #act #congress #sentinel #initiative #archive</p>
<h1>Bibliography</h1>
<p>EHDEN Academy</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<ul>
<li><p>FDA thought clinical trials for drug testing was:</p>
</li>
</ul>
<pre><code class="language-julia">- Too short
- Too small scale</code></pre>
<ul>
<li><p>FDA requested observational testing of released drugs based on actual patients</p>
</li>
<li><p>US Congress passed the FDA Amendment Act</p>
</li>
</ul>
<pre><code class="language-julia">- Establishing a Risk Identification and Analysis System
	- Framework to generate evidence to characterise any possible effects from drugs in use
	- Utilizes observational healthcare data sources
- Sentinel Initiative created by FDA
	- Surveys and studies effects of drugs on patients</code></pre>
<ul>
<li><p>Lack of regulation and drug approval guidelines after decision</p>
</li>
</ul>
<pre><code class="language-julia">- Required industry partnerships 
- Culminated in the creation of the &#91;Observational Medical Outcomes Partnership &#40;OMOP&#41;&#93;&#40;https://jacobzelko.com/07282021181744-origins-omop&#41;</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>FDA Amendment Act</em>. <a href="https://jacobzelko.com/07282021175202-fda-risk-prevention">https://jacobzelko.com/07282021175202-fda-risk-prevention</a>. July 28 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Wed, 28 Jul 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Cuebiq Mobility Data Summary  ]]>
  </title>
  <link> https://jacobzelko.com/06082021203922-cuebiq-mobility-summary/index.html </link>
  <guid> https://jacobzelko.com/06082021203922-cuebiq-mobility-summary/index.html </guid>
  <description>
    <![CDATA[  An overview of where Cuebiq mobility data comes from and a highlight of some of its key variables.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Cuebiq Mobility Data Summary</h1>
<p><strong>Date:</strong> June 8 2021</p>
<p><strong>Summary:</strong> An overview of where Cuebiq mobility data comes from and a highlight of some of its key variables.</p>
<p><strong>Keywords:</strong> #cuebiq #mobility #dataset #policy #index #cci #cmi  #archive</p>
<h1>Bibliography</h1>
<p>Cuebiq, &quot;Mobility Insights - Cuebiq,&quot; Jun. 08, 2021. https://www.cuebiq.com/visitation-insights-covid19/?utm<em>source&#61;nyt&amp;utm</em>medium&#61;article&amp;utm_campaign&#61;organic &#40;accessed Jun. 08, 2021&#41;.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Origins of the Data</li><li>Mobility Metrics</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="origins_of_the_data">Origins of the Data</h3>
<p>Cuebiq collects 1st party location data from over twenty five million active users daily.  The data covers the continental US and excludes Hawaii and Alaska.  Cuebiq brokers with 100&#43; applications to collect this location data. This creates a diversity of data from opted-in individuals while preserving anonymity. &#91;1&#93;</p>
<h3 id="mobility_metrics">Mobility Metrics</h3>
<p><strong>Shelter-In-Place:</strong> Percent of devices staying within 300 ft of home each day</p>
<p><strong>Cuebiq Contact Index:</strong> When &gt; 1 devices are within 50ft of one another for &gt; 5min. &#91;1&#93;</p>
<p><strong>Cuebiq Mobility Index:</strong> How far devices move each day. It is calculated using a derivative factor indicating the distance between opposite corners of a box drawn around the locations observed for devices on each day. </p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Cuebiq Mobility Data Summary</em>. <a href="https://jacobzelko.com/06082021203922-cuebiq-mobility-summary">https://jacobzelko.com/06082021203922-cuebiq-mobility-summary</a>. June 8 2021.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; Cuebiq, “Mobility Insights - Cuebiq,” Jun. 08, 2021. https://www.cuebiq.com/visitation-insights-covid19/?utm<em>source&#61;nyt&amp;utm</em>medium&#61;article&amp;utm_campaign&#61;organic &#40;accessed Jun. 08, 2021&#41;.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 08 Jun 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Association of State-Issued Mask Mandates and Allowing On-Premises Restaurant Dining with County-Level COVID-19 Case and Death Growth Rates - United States, March 1 - December 31, 2020  ]]>
  </title>
  <link> https://jacobzelko.com/06072021210734-mask-mandates-association/index.html </link>
  <guid> https://jacobzelko.com/06072021210734-mask-mandates-association/index.html </guid>
  <description>
    <![CDATA[  How mask mandates could be correlated with on site dining and COVID death and growth rates  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Association of State-Issued Mask Mandates and Allowing On-Premises Restaurant Dining with County-Level COVID-19 Case and Death Growth Rates - United States, March 1 - December 31, 2020</h1>
<p><strong>Date:</strong> June 7 2021</p>
<p><strong>Summary:</strong> How mask mandates could be correlated with on site dining and COVID death and growth rates</p>
<p><strong>Keywords:</strong> #covid #growth #death #mask #mandates #policy #restaurants  #archive</p>
<h1>Bibliography</h1>
<p>G. P. Guy et al., &quot;Association of State-Issued Mask Mandates and Allowing On-Premises Restaurant Dining with County-Level COVID-19 Case and Death Growth Rates — United States, March 1–December 31, 2020,&quot; MMWR Morb. Mortal. Wkly. Rep., vol. 70, no. 10, pp. 350–354, Mar. 2021, doi: 10.15585/mmwr.mm7010e3.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Definitions and Background</li><li>Equations</li><li>Methods</li><li>Results</li><li>Limitations</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="definitions_and_background">Definitions and Background</h3>
<p><strong>State-issued mask mandates:</strong> Required to wear masks at:</p>
<ol>
<li><p>Outside home</p>
</li>
<li><p>Businesses and food establishments.</p>
</li>
</ol>
<p><strong>State-issued restaurant closures:</strong> Restaurants not operating or restricting service to takeout, curbside pickup, or delivery. </p>
<p><strong>Providing indoor or outdoor on-premises dining:</strong> State lifting a restaurant closure. No distinction was made on how restaurants reopened &#40;such as with reduced capacity, enhanced sanitation, etc.&#41;. Per states, if a bar served food, it was coded as a restaurant and if a bar did not serve food, there were bars.</p>
<h3 id="equations">Equations</h3>
<p>&#40;1&#41; Daily growth rate : </p>
\[
\ln(cumulative cases or deaths)_{day} - \ln(cumulative cases or deaths)_{day} - 1 * 100
\]
<h3 id="methods">Methods</h3>
<p>Analyses were weighted by county population; standard errors were robust to heteroscedasticity; clustered by state. </p>
<p>Relationship between policies and COVID-19 measured 1–20 days prior to implementation compared with seven mutually exclusive time ranges post-implementation. Associations were examined 60 - 41 and 40 - 21 days before implementation and 1–20, 21–40, 41–60, 61–80, and 81–100 days after implementation.</p>
<p>COVID-19 case and death growth rates were compared via weighted least-squares regression with county and day fixed effects. Four regression models were used for associating mandates and COVID-19 growth rates by controlling for:</p>
<ul>
<li><p>Restaurant closures in mask mandate models</p>
</li>
<li><p>Mask mandates in the restaurant reopening models</p>
</li>
<li><p>Bar closures</p>
</li>
<li><p>Stay-at-home orders</p>
</li>
<li><p>Bans on gatherings of &gt;&#61; 10 persons</p>
</li>
<li><p>Daily COVID-19 tests per 100000 persons</p>
</li>
<li><p>County</p>
</li>
<li><p>Day</p>
</li>
</ul>
<p><em>QUESTION: I wonder how they controlled for these covariate variables?</em></p>
<h3 id="results">Results</h3>
<p>Decreases in daily COVID-19 case and death growth rates over these day ranges post-mask mandate implementation were seen:</p>
<ul>
<li><p>1 - 20</p>
</li>
<li><p>21 - 40</p>
</li>
<li><p>41 - 60</p>
</li>
<li><p>61 - 80</p>
</li>
<li><p>81 - 100</p>
</li>
</ul>
<p>Permitting on-premises dining saw increases in daily COVID-19 case growth rates</p>
<ul>
<li><p>41 - 60</p>
</li>
<li><p>61 - 80</p>
</li>
<li><p>81 - 100</p>
</li>
</ul>
<p>days after reopening.</p>
<p>Increases in daily COVID-19 death growth rates were observed</p>
<ul>
<li><p>61 - 80</p>
</li>
<li><p>81 - 100</p>
</li>
</ul>
<p>days after reopening.</p>
<p>During March 1–December 31, 2020, state-issued mask mandates applied in 2,313 &#40;73.6&#37;&#41; of the 3,142 U.S. counties. Post mask mandate COVID case growth rates:</p>
<ul>
<li><p>1 - 20 days: -0.5&#37; &#40;p &#61; 0.02&#41;</p>
</li>
<li><p>21 - 40 days: -1.1&#37; &#40;p &lt; 0.01 for all&#41;</p>
</li>
<li><p>41 - 60 days: -1.5&#37; &#40;p &lt; 0.01 for all&#41;</p>
</li>
<li><p>61 - 80 days: -1.7&#37; &#40;p &lt; 0.01 for all&#41;</p>
</li>
<li><p>81 -100 days: -1.8&#37; &#40;p &lt; 0.01 for all&#41;</p>
</li>
</ul>
<p>Post mask mandate COVID death growth rates:</p>
<ul>
<li><p>1 - 20 days: -0.7&#37; &#40;p &#61; 0.03&#41;</p>
</li>
<li><p>21 - 40 days: -1.0&#37; &#40;p &lt; 0.01 for all&#41;</p>
</li>
<li><p>41 - 60 days: -1.4&#37; &#40;p &lt; 0.01 for all&#41;</p>
</li>
<li><p>61 - 80 days: -1.6&#37; &#40;p &lt; 0.01 for all&#41;</p>
</li>
<li><p>81 -100 days: -1.9&#37; &#40;p &lt; 0.01 for all&#41;</p>
</li>
</ul>
<p><em>QUESTION: Oh so does this suggest that it took about 20 days before we started to see the lagging effects of these mandates?</em></p>
<p>After &gt; 40 days on-premises dining was permitted, increases in case and death growth rates were observed. Possible explanations:</p>
<ul>
<li><p>Restaurants may have delayed reopening after on-premises dining allowed</p>
</li>
<li><p>Restaurant patrons cautious at reopen but grew bolder as time passed.</p>
</li>
</ul>
<h3 id="limitations">Limitations</h3>
<ol>
<li><p>Models not control for other policies like: other types of business closures, physical distancing recommendations, policies issued by localities, and county-level policy variances.</p>
</li>
<li><p>Policy compliance and enforcement not explored.</p>
</li>
<li><p>No differentiating indoor and outdoor dining, ventilation, and following physical distancing and occupancy not investigated.</p>
</li>
</ol>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Association of State-Issued Mask Mandates and Allowing On-Premises Restaurant Dining with County-Level COVID-19 Case and Death Growth Rates - United States, March 1 - December 31, 2020</em>. <a href="https://jacobzelko.com/06072021210734-mask-mandates-association">https://jacobzelko.com/06072021210734-mask-mandates-association</a>. June 7 2021.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Mon, 07 Jun 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Decline in COVID-19 Hospitalization Growth Rates Associated with Statewide Mask Mandates — 10 States, March–October 2020  ]]>
  </title>
  <link> https://jacobzelko.com/06072021214725-decline-hospitilizations-mask/index.html </link>
  <guid> https://jacobzelko.com/06072021214725-decline-hospitilizations-mask/index.html </guid>
  <description>
    <![CDATA[  How mask mandates were associated with decreases in COVID hospitalization growth rates  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Decline in COVID-19 Hospitalization Growth Rates Associated with Statewide Mask Mandates — 10 States, March–October 2020</h1>
<p><strong>Date:</strong> June 7 2021</p>
<p><strong>Summary:</strong> How mask mandates were associated with decreases in COVID hospitalization growth rates</p>
<p><strong>Keywords:</strong> #hospitalization #covid #policy #mask #mandates #decrease #archive</p>
<h1>Bibliography</h1>
<p>H. Joo et al., &quot;Decline in COVID-19 Hospitalization Growth Rates Associated with Statewide Mask Mandates — 10 States, March–October 2020,&quot; MMWR Morb. Mortal. Wkly. Rep., vol. 70, no. 6, pp. 212–216, Feb. 2021, doi: 10.15585/mmwr.mm7006e2.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Study Purpose</li><li>Definitions</li><li>Data Source</li><li>Methods</li><li>Results</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="study_purpose">Study Purpose</h3>
<p>Examined whether implementation of statewide mask mandates was associated with COVID-19–associated hospitalization growth rates among different age groups.</p>
<h3 id="definitions">Definitions</h3>
<p><strong>Statewide mask mandate:</strong> persons operating in a personal capacity must wear a mask</p>
<ol>
<li><p>Outside home</p>
</li>
<li><p>At businesses and in restaurants &amp; food establishments</p>
</li>
</ol>
<p><strong>COVID-NET Site:</strong> Group of counties within a state. Sites in states that did not have statewide mask mandates during March 1– October 17, 2020, were excluded from the analyses.</p>
<p><strong>Nonpharmaceutical Interventions &#40;NPIs&#41;:</strong> Actions taken to slow the spread of infectious diseases.</p>
<h3 id="data_source">Data Source</h3>
<p><strong>COVID-NET:</strong> population-based surveillance system &#91;1&#93; that provides laboratory-confirmed, COVID-19–associated hospitalization rates in 99 counties located in 14 states, beginning March 1, 2020 &#91;2&#93;</p>
<h3 id="methods">Methods</h3>
<p>For analyses, cumulative hospitalization rates for each week of the study period for seven age cohorts &#40;adults aged 18–29, 30–39, 40–49, 50–64, 65–74, 75–84, and ≥85 years&#41; were aggregated into three age groups &#40;18–39, 40–64, and ≥65 years&#41;.</p>
<p>Weekly cumulative hospitalization growth rate &#40;HGrowthast&#41; for age cohort a in site s during week t is defined as the weekly percentage change in COVID-19 hospitalizations per 100,000 persons, estimated by HGrowth<em>&#123;ast&#125; &#61; &#40;&#40;log &#40;HR</em>&#123;ast&#125;&#41;-log &#40;HR<em>&#123;as&#40;t-1&#41;&#125;&#41;&#41;×100, where HR</em>&#123;ast&#125; &#61; cumulative hospitalization rate per 100,000 population for age cohort a in site s in week t. The log of the cumulative hospitalization growth rate is similar to the log of the cumulative cases per week, as the denominators are equivalent.</p>
<h3 id="results">Results</h3>
<p>For 40-64 year-olds, 2 weeks after statewide mask mandates: weekly hospitalization growth rates declined by 2.9&#37;.</p>
<p>For 40-64, 18 - 39 year-olds, &gt;&#61; 3 weeks after statewide mask mandates: weekly hospitalization growth rates declined by 5.5&#37;.</p>
<p><em>QUESTION: How were these age groupings made I wonder?</em></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Decline in COVID-19 Hospitalization Growth Rates Associated with Statewide Mask Mandates — 10 States, March–October 2020</em>. <a href="https://jacobzelko.com/06072021214725-decline-hospitilizations-mask">https://jacobzelko.com/06072021214725-decline-hospitilizations-mask</a>. June 7 2021.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; “Coronavirus Disease 2019 &#40;COVID-19&#41;-Associated Hospitalization Surveillance Network &#40;COVID-NET&#41; | CDC.” https://www.cdc.gov/coronavirus/2019-ncov/covid-data/covid-net/purpose-methods.html &#40;accessed Jun. 08, 2021&#41;.</p>
<p>&#91;2&#93; S. Garg et al., “Hospitalization rates and characteristics of patients hospitalized with laboratory-confirmed coronavirus disease 2019—COVID-NET, 14 States, March 1–30, 2020,” Morb. Mortal. Wkly. Rep., vol. 69, no. 15, p. 458, 2020.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Mon, 07 Jun 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  A Systematic Review of Publications Assessing Reliability and Validity of the Behavioral Risk Factor Surveillance System &#40;BRFSS&#41;  ]]>
  </title>
  <link> https://jacobzelko.com/06072021202628-brfss-systematic-review/index.html </link>
  <guid> https://jacobzelko.com/06072021202628-brfss-systematic-review/index.html </guid>
  <description>
    <![CDATA[  A systematic review to determine the reliability and validity of the BRFSS  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>A Systematic Review of Publications Assessing Reliability and Validity of the Behavioral Risk Factor Surveillance System &#40;BRFSS&#41;</h1>
<p><strong>Date:</strong> June 7 2021</p>
<p><strong>Summary:</strong> A systematic review to determine the reliability and validity of the BRFSS</p>
<p><strong>Keywords:</strong> #brfss #survey #reliability #validity #reports #archive</p>
<h1>Bibliography</h1>
<p>C. Pierannunzi, S. S. Hu, and L. Balluz, &quot;A systematic review of publications assessing reliability and validity of the Behavioral Risk Factor Surveillance System &#40;BRFSS&#41;, 2004–2011,&quot; BMC Med Res Methodol, vol. 13, no. 1, p. 49, Dec. 2013, doi: 10.1186/1471-2288-13-49.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>How Reliability and Validity Were Measured</li><li>Conclusions</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>Reduction of non-response bias through the introduction of new weighting techniques. &#91;1&#93; <em>QUESTION: What is non-response bias and how do you adjust for that?</em></p>
<h3 id="how_reliability_and_validity_were_measured">How Reliability and Validity Were Measured</h3>
<p>High reliable papers included:</p>
<ul>
<li><p>Conducted reliability tests using repeated test/retest measures</p>
</li>
<li><p>Used multiple samples/populations</p>
</li>
<li><p>Used multiple time periods.</p>
</li>
<li><p>Ran statistical tests</p>
</li>
</ul>
<p>How authors achieved higher validity by:</p>
<ul>
<li><p>Comparing BRFSS to physical measures.</p>
</li>
</ul>
<h3 id="conclusions">Conclusions</h3>
<p>Self-report on chronic conditions between BRFSS and surveys are highly reliable.</p>
<p>As time between conducting the same survey lapses, reliability for some questions decrease when re-asked. &#91;2&#93;</p>
<p>Sometimes, self-reports from the BRFSS were very reliable but prevalence differed. <em>QUESTION: What does it mean when self-reports are highly reliable and prevalence rates still differ? Seems really strange and I am not sure why this would happen...</em></p>
<p>Similarities between BRFSS and other surveys using self-reports persisted across different modes of reporting like phone calls or in-person interviews. Researchers observed BRFSS reliability and validity for some cohorts but not for others. &#91;3&#93;</p>
<p>All surveys consistently showed the proportion of respondents indicating general health to be &quot;excellent&quot; was declining. <em>RESEARCH OPPORTUNITY</em></p>
<p>BRFSS physical activity measures and responses were compared sometimes to physical device measures.Prevalence variation estimates found occasionally; trends similar when comparing survey results over time. <em>QUESTION: Interesting how with devices prevalences did vary but trends were found to be similar across demographics. I wonder what reports did that? I&#39;ll stick a pin in this for now.</em></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>A Systematic Review of Publications Assessing Reliability and Validity of the Behavioral Risk Factor Surveillance System &#40;BRFSS&#41;</em>. <a href="https://jacobzelko.com/06072021202628-brfss-systematic-review">https://jacobzelko.com/06072021202628-brfss-systematic-review</a>. June 7 2021.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; D. G. Altman and J. M. Bland, “Diagnostic tests. 1: Sensitivity and specificity.” BMJ, vol. 308, no. 6943, p. 1552, 1994.</p>
<p>&#91;2&#93; M. M. Yore et al., “Reliability and validity of the instrument used in BRFSS to assess physical activity.” Med. Sci. Sports Exerc., vol. 39, no. 8, pp. 1267–1274, 2007.</p>
<p>&#91;3&#93; L. A. Mucci, P. A. Wood, B. Cohen, K. M. Clements, P. Brawarsky, and D. R. Brooks, “Validity of self-reported health plan information in a population-based health survey,” J. Public Health Manag. Pract., vol. 12, no. 6, pp. 570–577, 2006.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 07 Jun 2021 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  The Book of OHDSI  ]]>
  </title>
  <link> https://jacobzelko.com/05172021000348-book-of-ohdsi/index.html </link>
  <guid> https://jacobzelko.com/05172021000348-book-of-ohdsi/index.html </guid>
  <description>
    <![CDATA[  The bible of OHDSI detailing how to work with the OHDSI research network.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>The Book of OHDSI</h1>
<p><strong>Date:</strong> May 16 2021</p>
<p><strong>Summary:</strong> The bible of OHDSI detailing how to work with the OHDSI research network.</p>
<p><strong>Keywords:</strong> ##bibliography #ohdsi #research #omop #cdm #atlas #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Background</li><li>Study Types</li><li>Study Packages</li><li>Cohorts</li><li>OHDSI Guiding Principles for Studies</li><li>Feasibility</li><li>Site Collaboration</li><li>Pursuing Publication</li><li>Observational Medical Outcomes Partnership &#40;OMOP&#41;</li><li>Observational Health Data Sciences and Informatics &#40;OHDSI&#41;</li><li>Misc</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>The Book of OHDSI, to quote my friend and mentor Kristin Kostka, is &quot;an act of God&quot; that it came to be in how thorough and useful a resource it is for the OHDSI community. Over the past couple years, I have read multiple parts of this book over and over again for my work and research. In general, this book is a useful resource for OHDSI but I do find it to be sometimes limited in utility for the greater observational health community. These are my notes on the book along with various commentary.</p>
<h3 id="background">Background</h3>
<p>Here we aim to provide a general step­by­step guide to the design and implementation of an observational study with the OHDSI tools Note: In this case, this is the critical flaw of this book when tells i y about studies. It limits itself to only thinking within the context of the available HADES Tools when there is SO much more going on&#33; </p>
<h3 id="study_types">Study Types</h3>
<p><a href="https://jacobzelko.com/05302023183944-open-network-studies">Open Network Studies</a> <a href="https://jacobzelko.com/05172021000429-observational-studies">Observational research studies</a> </p>
<h3 id="study_packages">Study Packages</h3>
<p><a href="https://jacobzelko.com/05302023184217-study-packages">Study Packages</a> <a href="https://jacobzelko.com/05302023185922-study-package-requirements">Requirements</a> <a href="https://jacobzelko.com/05302023190833-study-package-deficiencies">Deficiencies</a> <a href="https://jacobzelko.com/05302023193327-study-data-quality">Data Quality</a> <a href="https://jacobzelko.com/05302023195603-study-code-quality">Code Quality</a></p>
<h3 id="cohorts">Cohorts</h3>
<p><a href="https://jacobzelko.com/05302023184442-ohdsi-cohorts">Cohorts</a> <a href="https://jacobzelko.com/05302023195713-cohort-revisions">Revisions</a></p>
<h3 id="ohdsi_guiding_principles_for_studies">OHDSI Guiding Principles for Studies</h3>
<p><a href="https://jacobzelko.com/05302023184624-general-study-guidelines">General Guidelines</a> <a href="https://jacobzelko.com/05302023184827-study-design-ohdsi">Study Design</a> <a href="https://jacobzelko.com/05302023185043-ohdsi-protocol-study">Protocols</a> <a href="https://jacobzelko.com/05302023185223-checking-study-design">Reviewing Study Design</a> <a href="https://jacobzelko.com/05302023185737-finalizing-ohdsi-study">Finalizing Study Creation</a></p>
<h3 id="feasibility">Feasibility</h3>
<p><a href="https://jacobzelko.com/05302023200034-feasibility-assessment-approach">Checking Feasibility Approach</a></p>
<h3 id="site_collaboration">Site Collaboration</h3>
<p><a href="https://jacobzelko.com/05302023200241-site-collaboration">Background</a> <a href="https://jacobzelko.com/05302023200347-roles-network-study">Roles</a> <a href="https://jacobzelko.com/05302023200536-study-collaboration-deficiencies">Deficiencies</a> <a href="https://jacobzelko.com/05302023202626-site-collaboration-requirements">Requirements</a></p>
<h3 id="pursuing_publication">Pursuing Publication</h3>
<p><a href="https://jacobzelko.com/05302023203344-pursuing-publication-venues">Resources</a></p>
<h3 id="observational_medical_outcomes_partnership_omop">Observational Medical Outcomes Partnership &#40;OMOP&#41;</h3>
<ul>
<li><p><a href="https://jacobzelko.com/07282021181744-origins-omop">OMOP Origins</a></p>
</li>
<li><p><a href="https://jacobzelko.com/02082021170353-cdm-standardized-tables">OMOP CDM standardized tables</a></p>
</li>
</ul>
<h3 id="observational_health_data_sciences_and_informatics_ohdsi">Observational Health Data Sciences and Informatics &#40;OHDSI&#41;</h3>
<ul>
<li><p><a href="https://jacobzelko.com/07282021184510-ohdsi-background">OHDSI Origins</a></p>
</li>
<li><p><a href="https://jacobzelko.com/07282021185354-ohdsi-goals">Goals of OHDSI</a></p>
</li>
</ul>
<h3 id="misc">Misc</h3>
<p>Observational Health Data Sciences and Informatics &#40;OHDSI&#41;: open community improving health by generating evidence to better health decisions and care. &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>The Book of OHDSI</em>. <a href="https://jacobzelko.com/05172021000348-book-of-ohdsi">https://jacobzelko.com/05172021000348-book-of-ohdsi</a>. May 16 2021.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; G. Hripcsak et al., “Observational health data sciences and informatics &#40;OHDSI&#41;: Opportunities for observational researchers,” Stud. Health Technol. Inform., vol. 216, p. 574, 2015.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 16 May 2021 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Observational Health Research Studies  ]]>
  </title>
  <link> https://jacobzelko.com/05172021000429-observational-studies/index.html </link>
  <guid> https://jacobzelko.com/05172021000429-observational-studies/index.html </guid>
  <description>
    <![CDATA[  Basic terminology of observational health studies  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Observational Health Research Studies</h1>
<p><strong>Date:</strong> May 16 2021</p>
<p><strong>Summary:</strong> Basic terminology of observational health studies</p>
<p><strong>Keywords:</strong> #observational #research #study #ohdsi #archive</p>
<h1>Bibliography</h1>
<p>Observational Health Data Sciences and Informatics Collaborative, The Book of OHDSI. OHDSI, 2021. &#91;Online&#93;. Available: https://ohdsi.github.io/TheBookOfOhdsi/</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Motivation</li><li>Characteristics</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="motivation">Motivation</h3>
<p>Building an understanding of how observational studies are defined generally.</p>
<h3 id="characteristics">Characteristics</h3>
<p>Observational study: a study where patients are observed; no intervention of any kind is not introduced. </p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Observational Health Research Studies</em>. <a href="https://jacobzelko.com/05172021000429-observational-studies">https://jacobzelko.com/05172021000429-observational-studies</a>. May 16 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 16 May 2021 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Learning MySQL  ]]>
  </title>
  <link> https://jacobzelko.com/03152021204433-mysql-programming/index.html </link>
  <guid> https://jacobzelko.com/03152021204433-mysql-programming/index.html </guid>
  <description>
    <![CDATA[  Notes on my adventures in learning MySQL syntax and concepts  ]]>
  </description>  
  
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<h1>Learning MySQL</h1>
<p><strong>Date:</strong> March 15 2021</p>
<p><strong>Summary:</strong> Notes on my adventures in learning MySQL syntax and concepts</p>
<p><strong>Keywords:</strong> ##zettel #mysql #sql #query #language #databases #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Security<ol><li>Adjusting Password Security<ol><li>Low Validate Password Policy</li></ol></li></ol></li><li>Managing Users and Permissions<ol><li>User Creation</li><li>Adding User Permissions<ol><li>Grant User Permission to Everything</li></ol></li></ol></li><li>Manipulating Databases<ol><li>Create a Database</li></ol></li><li>Manipulating Tables<ol><li>Creating Tables</li><li>Keys<ol><li>Primary Key</li></ol></li><li>Wildcards<ol><li>Gobble</li><li>Placeholder</li></ol></li></ol></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="security">Security</h3>
<h4 id="adjusting_password_security">Adjusting Password Security</h4>
<h5 id="low_validate_password_policy">Low Validate Password Policy</h5>
<pre><code class="language-sql">SET GLOBAL validate_password.policy&#61;LOW;</code></pre>
<h3 id="managing_users_and_permissions">Managing Users and Permissions</h3>
<h4 id="user_creation">User Creation</h4>
<pre><code class="language-sql">CREATE USER &#39;username&#39;@&#39;localhost&#39; IDENTIFIED BY &#39;mypassword&#39;;</code></pre>
<h4 id="adding_user_permissions">Adding User Permissions</h4>
<h5 id="grant_user_permission_to_everything">Grant User Permission to Everything</h5>
<pre><code class="language-sql">GRANT ALL PRIVILEGES ON * . * TO &#39;username&#39;@&#39;localhost&#39;;</code></pre>
<h3 id="manipulating_databases">Manipulating Databases</h3>
<h4 id="create_a_database">Create a Database</h4>
<pre><code class="language-sql">CREATE DATABASE mydatabase;</code></pre>
<h3 id="manipulating_tables">Manipulating Tables</h3>
<h4 id="creating_tables">Creating Tables</h4>
<h4 id="keys">Keys</h4>
<h5 id="primary_key">Primary Key</h5>
<pre><code class="language-sql">CREATE TABLE foo &#40;
	id INT PRIMARY KEY
&#41;;</code></pre>
<h4 id="wildcards">Wildcards</h4>
<h5 id="gobble">Gobble</h5>
<pre><code class="language-sql">SELECT * FROM table WHERE last_name LIKE &#39;&#37;Smith&#39;;</code></pre>
<h5 id="placeholder">Placeholder</h5>
<pre><code class="language-sql">SELECT * FROM table WHERE date LIKE &#39;____-10&#37;&#39;;</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Learning MySQL</em>. <a href="https://jacobzelko.com/03152021204433-mysql-programming">https://jacobzelko.com/03152021204433-mysql-programming</a>. March 15 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 15 Mar 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Metapopulation Analysis  ]]>
  </title>
  <link> https://jacobzelko.com/03012021162136-metapopulation-analysis/index.html </link>
  <guid> https://jacobzelko.com/03012021162136-metapopulation-analysis/index.html </guid>
  <description>
    <![CDATA[  An overview of metapopulation analysis and how it could be  ]]>
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    <![CDATA[  
<h1>Metapopulation Analysis</h1>
<p><strong>Date:</strong> March 1 2021</p>
<p><strong>Summary:</strong> An overview of metapopulation analysis and how it could be</p>
<p><strong>Keywords:</strong> ##zettel #biology #sociology #population #analysis #mobility #extinction  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Conversation with Jakob Nissen</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="conversation_with_jakob_nissen">Conversation with Jakob Nissen</h3>
<p>I was explained by Jakob Nissen, a Danish Bioinformatics PhD, that one can think of metapopulation analysis as follows:</p>
<p>The analysis has its foundation in ecology where the goal was to explore a specific species as a &quot;population of populations&quot;. For example, if you have a large area where there are many smaller habitats, a species can go extinct without causing a large problem for or impact on the overall area. This is because other species from nearby habitats will eventually move in to the old habitat of that species. Therefore, to ascertain the status of that species, the larger area needs to be considered</p>
<p>When I asked about how one could map these approach to humans, Jakob had the following idea:</p>
<p>One could model society as a large group of social bubbles where people see other people inside the bubble in the context of epidemics. So perhaps here, the virus is going extinct in social bubbles and migrating from bubble to bubble.</p>
<p>This gave some good thoughts on approaches for metapopulation-based analysis to epidemics/pandemics.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Metapopulation Analysis</em>. <a href="https://jacobzelko.com/03012021162136-metapopulation-analysis">https://jacobzelko.com/03012021162136-metapopulation-analysis</a>. March 1 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 01 Mar 2021 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  Positivism  ]]>
  </title>
  <link> https://jacobzelko.com/02142021230244-positivism/index.html </link>
  <guid> https://jacobzelko.com/02142021230244-positivism/index.html </guid>
  <description>
    <![CDATA[  The philosophy of positivism  ]]>
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<h1>Positivism</h1>
<p><strong>Date:</strong> February 14 2021</p>
<p><strong>Summary:</strong> The philosophy of positivism</p>
<p><strong>Keywords:</strong> ##zettela #positivism  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Positivism: the universe is a product of human thought. Science is only a description of those thoughts.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Positivism</em>. <a href="https://jacobzelko.com/02142021230244-positivism">https://jacobzelko.com/02142021230244-positivism</a>. February 14 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 14 Feb 2021 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Artificial Intelligence Timeline  ]]>
  </title>
  <link> https://jacobzelko.com/02152021024738-artificial-intelligence-timeline/index.html </link>
  <guid> https://jacobzelko.com/02152021024738-artificial-intelligence-timeline/index.html </guid>
  <description>
    <![CDATA[  A timeline summary of the history of Artificial Intelligence  ]]>
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<h1>Artificial Intelligence Timeline</h1>
<p><strong>Date:</strong> February 14 2021</p>
<p><strong>Summary:</strong> A timeline summary of the history of Artificial Intelligence</p>
<p><strong>Keywords:</strong> ##timeline #artificial #intelligence #history  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>1900 CE<ol><li>1980 - 1989 CE</li></ol></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="1900_ce">1900 CE</h3>
<h4 id="1980_-_1989_ce">1980 - 1989 CE</h4>
<ul>
<li><p>1980 - expert systems struggled with making correct inferences from uncertain knowledge.</p>
</li>
<li><p>1989 - Yann LeCun develops handwriting recognition</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Artificial Intelligence Timeline</em>. <a href="https://jacobzelko.com/02152021024738-artificial-intelligence-timeline">https://jacobzelko.com/02152021024738-artificial-intelligence-timeline</a>. February 14 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 14 Feb 2021 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  Organized Denialism  ]]>
  </title>
  <link> https://jacobzelko.com/02092021024221-organized-denialism/index.html </link>
  <guid> https://jacobzelko.com/02092021024221-organized-denialism/index.html </guid>
  <description>
    <![CDATA[  Organized ignorance and invalidation of legitimate information  ]]>
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<h1>Organized Denialism</h1>
<p><strong>Date:</strong> February 8 2021</p>
<p><strong>Summary:</strong> Organized ignorance and invalidation of legitimate information</p>
<p><strong>Keywords:</strong> ##zettel #denialism #organized #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>&quot;Organized Denialism&quot; - a term coined by Judea Pearl in his book <a href="https://jacobzelko.com/01072021082043-book-of-why"><em>The Book of Why</em></a> when he discussed the US tobacco industry&#39;s organized denial of the negative effects of cigarettes. Organized ignorance and invalidation of legitimate information.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Organized Denialism</em>. <a href="https://jacobzelko.com/02092021024221-organized-denialism">https://jacobzelko.com/02092021024221-organized-denialism</a>. February 8 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 08 Feb 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Manipulating Files in R  ]]>
  </title>
  <link> https://jacobzelko.com/02082021203741-R-file-manipulation/index.html </link>
  <guid> https://jacobzelko.com/02082021203741-R-file-manipulation/index.html </guid>
  <description>
    <![CDATA[  Tips and tricks on how to manipulate files in R  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Manipulating Files in R</h1>
<p><strong>Date:</strong> February 8 2021</p>
<p><strong>Summary:</strong> Tips and tricks on how to manipulate files in R</p>
<p><strong>Keywords:</strong> #zettel #r #programming #tips #tricks #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Loading Files</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="loading_files">Loading Files</h3>
<p>To load in files via the R REPL, do:</p>
<pre><code class="language-r">source&#40;&quot;name_of_file.R&quot;&#41;</code></pre>
<p>This updates the state of the session and brings into the current session any variables defined within the file.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Manipulating Files in R</em>. <a href="https://jacobzelko.com/02082021203741-R-file-manipulation">https://jacobzelko.com/02082021203741-R-file-manipulation</a>. February 8 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 08 Feb 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  renv - Reproducible Environments in R  ]]>
  </title>
  <link> https://jacobzelko.com/02082021205610-renv-package/index.html </link>
  <guid> https://jacobzelko.com/02082021205610-renv-package/index.html </guid>
  <description>
    <![CDATA[  Useful state of the art package for reproducing R projects  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>renv - Reproducible Environments in R</h1>
<p><strong>Date:</strong> February 8 2021</p>
<p><strong>Summary:</strong> Useful state of the art package for reproducing R projects</p>
<p><strong>Keywords:</strong> #zettel #r #programming #package #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>General Workflow When Working with <code>renv</code></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="general_workflow_when_working_with_renv">General Workflow When Working with <code>renv</code></h3>
<ol>
<li><p>Call <code>renv::init&#40;&#41;</code> to initialize a new project-local environment with a private R library,</p>
</li>
<li><p>Work in the project as normal, installing and removing new R packages as they are needed in the project,</p>
</li>
<li><p>Call <code>renv::snapshot&#40;&#41;</code> to save the state of the project library to the lockfile &#40;called <code>renv.lock</code>&#41;,</p>
</li>
<li><p>Continue working on your project, installing and updating R packages as needed.</p>
</li>
<li><p>Call <code>renv::snapshot&#40;&#41;</code> again to save the state of your project library if your attempts to update R packages were successful, or call <code>renv::restore&#40;&#41;</code> to revert to the previous state as encoded in the lockfile if your attempts to update packages introduced some new problems.</p>
</li>
</ol>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>renv - Reproducible Environments in R</em>. <a href="https://jacobzelko.com/02082021205610-renv-package">https://jacobzelko.com/02082021205610-renv-package</a>. February 8 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 08 Feb 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Programming in R  ]]>
  </title>
  <link> https://jacobzelko.com/02082021203324-r-programming/index.html </link>
  <guid> https://jacobzelko.com/02082021203324-r-programming/index.html </guid>
  <description>
    <![CDATA[  Tips and tricks I learn while writing R code  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Programming in R</h1>
<p><strong>Date:</strong> February 8 2021</p>
<p><strong>Summary:</strong> Tips and tricks I learn while writing R code</p>
<p><strong>Keywords:</strong> #zettel #r #programming #statistics #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Reading and Loading Files</li><li>Packages</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="reading_and_loading_files">Reading and Loading Files</h3>
<ul>
<li><p><a href="https://jacobzelko.com/02082021203741-R-file-manipulation">File manipulation</a></p>
</li>
</ul>
<h3 id="packages">Packages</h3>
<ul>
<li><p><a href="https://jacobzelko.com/02082021205610-renv-package">renv</a> - Useful state of the art package for reproducing R projects.</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Programming in R</em>. <a href="https://jacobzelko.com/02082021203324-r-programming">https://jacobzelko.com/02082021203324-r-programming</a>. February 8 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 08 Feb 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  CDM Standardized Tables  ]]>
  </title>
  <link> https://jacobzelko.com/02082021170353-cdm-standardized-tables/index.html </link>
  <guid> https://jacobzelko.com/02082021170353-cdm-standardized-tables/index.html </guid>
  <description>
    <![CDATA[  Standardized tables used in the OMOP Common Data Model  ]]>
  </description>  
  
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    <![CDATA[  
<h1>CDM Standardized Tables</h1>
<p><strong>Date:</strong> February 8 2021</p>
<p><strong>Summary:</strong> Standardized tables used in the OMOP Common Data Model</p>
<p><strong>Keywords:</strong> #zettel #omop #cdm #table #standardized #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>OMOP CDM Design Elements</li><li>OMOP CDM Conventions</li><li>OMOP CDM &quot;Concept&quot;&#39;s<ol><li>&quot;Concept&quot; Example</li><li>Drug &quot;Concepts&quot;</li></ol></li><li>Use Cases for the OMOP CDM</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>OMOP Common Data Model &#40;CDM&#41;: effort to standardize observational data to enable transferable analysis. &#91;1&#93;</p>
<h3 id="omop_cdm_design_elements">OMOP CDM Design Elements</h3>
<p>The OMOP CDM features person­centric design where each domain records personal identity and a ate while prioritizing data protection through the limiting of information that could endanger patient anonymity. The CDM relies on Standardized Vocabularies and attempts to reuse existing vocabularies where it can. Furthermore, to prevent data loss, the CDM stores original patient source codes.</p>
<p>The CDM itself does not require a specific technology to work with the data stored in this standard. As a result of this, all versions of the CDM are backwards compatible Even more the CDM is scalable for data processing and analy­sis</p>
<h3 id="omop_cdm_conventions">OMOP CDM Conventions</h3>
<p>The CDM is person ­centric meaning tha all clinical Event tables are linked to the<code>PERSON</code> table. Tables that need to be manipulated by users are stored in the &quot;Results&quot; schema. The two tables in the &quot;Results&quot; schema are: <code>COHORT</code> and <code>COHORT_DEFINITION</code>. The data types defined in these tables are ANSI SQL:</p>
<ul>
<li><p>VARCHAR</p>
</li>
<li><p>INTEGER</p>
</li>
<li><p>FLOAT</p>
</li>
<li><p>DATE</p>
</li>
<li><p>DATETIME</p>
</li>
<li><p>CLOB</p>
</li>
</ul>
<h3 id="omop_cdm_concepts">OMOP CDM &quot;Concept&quot;&#39;s</h3>
<p>All content in the OMOP CDM is a concept. They form relationships with one another in a hierarchical manner. This concept information is stored in the following tables:</p>
<ol>
<li><p><code>CONCEPT</code> - the concepts in the CDM</p>
</li>
<li><p><code>CONCEPT_RELATIONSHIP</code> - the relationships between concepts</p>
</li>
<li><p><code>CONCEPT_ANCESTOR</code> - hierarchical concept relationships; see <a href="https://jacobzelko.com/07282021202459-exploring-ancestors-concept">Exploring Ancestors and Descendants of a Concept</a></p>
</li>
</ol>
<h4 id="concept_example">&quot;Concept&quot; Example</h4>
<p>| CONCEPT<em>ID       | 313217             | | CONCEPT</em>NAME     | Atrial Fibrilation | | DOMAIN<em>ID        | Condition          | | VOCABULARY</em>ID    | SNOMED             | | CONCEP<em>CLASS</em>ID  | Clinical Finding   | | STANDARD<em>CONCEPT | S                  | | CONCEPT</em>CODE     | 4936004            | | VALID<em>START</em>DATE | 01-Jan-1970        | | VALID<em>END</em>DATE   | 31-Dec-2099        | | INVALID_REASON   |                    |</p>
<ul>
<li><p><code>CONCEPT_ID</code> is used internally by the OMOP CDM to reference a specific concept</p>
</li>
<li><p><code>STANDARD_CONCEPT</code> designates if a concept is standard within the OMOP CDM: &quot;S&quot; represents it is standard, &quot;C&quot; represents its classification, and no value means that concept is not used inside the OMOP CDM</p>
</li>
</ul>
<h4 id="drug_concepts">Drug &quot;Concepts&quot;</h4>
<p>Includes:</p>
<ul>
<li><p>Drug Products</p>
</li>
<li><p>Drug Ingredients</p>
</li>
<li><p>Drug Classes</p>
</li>
</ul>
<p>One can query <a href="https://jacobzelko.com/07282021211226-drug-concepts">drug concepts by name</a> easily in OHDSI tools.</p>
<h3 id="use_cases_for_the_omop_cdm">Use Cases for the OMOP CDM</h3>
<p>The OMOP CDM is implemented to help with Big Health Data collection. We use Big Health Data because it:</p>
<ol>
<li><p>Enables research</p>
</li>
<li><p>Backs effective healthcare</p>
</li>
<li><p>Manages healthcare claims</p>
</li>
</ol>
<p>The CDM is optimized for typical observational research purposes such as</p>
<ol>
<li><p>Identifying patient populations</p>
</li>
<li><p>Characterize populations</p>
</li>
<li><p>Determining effects of population-based interventions</p>
</li>
<li><p>Organize data for analysis</p>
</li>
</ol>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>CDM Standardized Tables</em>. <a href="https://jacobzelko.com/02082021170353-cdm-standardized-tables">https://jacobzelko.com/02082021170353-cdm-standardized-tables</a>. February 8 2021.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; J. M. Overhage, P. B. Ryan, C. G. Reich, A. G. Hartzema, and P. E. Stang, “Validation of a common data model for active safety surveillance research,” J. Am. Med. Inform. Assoc., vol. 19, no. 1, pp. 54–60, 2012.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 08 Feb 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Functional Gestures  ]]>
  </title>
  <link> https://jacobzelko.com/02072021223949-functional-gestures/index.html </link>
  <guid> https://jacobzelko.com/02072021223949-functional-gestures/index.html </guid>
  <description>
    <![CDATA[  Physical gestures that carry semantic meaning  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Functional Gestures</h1>
<p><strong>Date:</strong> February 7 2021</p>
<p><strong>Summary:</strong> Physical gestures that carry semantic meaning</p>
<p><strong>Keywords:</strong> ##zettel #gestures #computer #vision #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>A functional gesture is defined as the semantic meaning of an event that triggers a state transition and not as the movement to be performed.  &#91;1&#93; &#91;Twitch Stream User: gwd999&#93;</p>
<p>its basically computer vision project to recognise hand gestures that carries some meaning &#91;Twitch Stream User: quantum_booty&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Functional Gestures</em>. <a href="https://jacobzelko.com/02072021223949-functional-gestures">https://jacobzelko.com/02072021223949-functional-gestures</a>. February 7 2021.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; S. Carrino, M. Caon, O. Abou Khaled, R. Ingold, and E. Mugellini, “Functional Gestures for Human-Environment Interaction,” in Human-Computer Interaction. Interaction Modalities and Techniques, vol. 8007, M. Kurosu, Ed. Berlin, Heidelberg: Springer Berlin Heidelberg, 2013, pp. 167–176. doi: 10.1007/978-3-642-39330-3_18.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 07 Feb 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  What Is Race  ]]>
  </title>
  <link> https://jacobzelko.com/01202021041928-what-is-race/index.html </link>
  <guid> https://jacobzelko.com/01202021041928-what-is-race/index.html </guid>
  <description>
    <![CDATA[  Overviews on what race is as a concept  ]]>
  </description>  
  
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    <![CDATA[  
<h1>What Is Race</h1>
<p><strong>Date:</strong> January 19 2021</p>
<p><strong>Summary:</strong> Overviews on what race is as a concept</p>
<p><strong>Keywords:</strong> ##zettel #race #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p><strong>Race:</strong> organizing inequalities across economic, environmental, social and political domains of human interactions &#91;1&#93;–&#91;3&#93;</p>
<p><em>THOUGHTS: I am somewhat confused by this definition of race. Perhaps ask someone for further explanation on the matter.</em></p>
<p><strong>Whiteness:</strong> power, privilege and identity organized along white racialized ideologies and practices. &#91;3&#93;, &#91;4&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Is Race</em>. <a href="https://jacobzelko.com/01202021041928-what-is-race">https://jacobzelko.com/01202021041928-what-is-race</a>. January 19 2021.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; J. Acker, “Inequality regimes: Gender, class, and race in organizations,” Gend. Soc., vol. 20, no. 4, pp. 441–464, 2006.</p>
<p>&#91;2&#93; A. Sriprakash and S. Walker, “Questions of Race in Education and Development,” presented at the Questions of Race in Education and Development Workshop, 2018.</p>
<p>&#91;3&#93; G. Marchais, P. Bazuzi, and A. Amani Lameke, “‘The data is gold, and we are the gold-diggers’: Whiteness, race and contemporary academic research in eastern DRC,” Critical African Studies, vol. 12, no. 3, pp. 372–394, Sep. 2020, doi: 10.1080/21681392.2020.1724806.</p>
<p>&#91;4&#93; D. van Zyl-Hermann and J. Boersema, “Introduction: The politics of whiteness in Africa,” Africa, vol. 87, no. 4, pp. 651–661, 2017.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 19 Jan 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Census Groups  ]]>
  </title>
  <link> https://jacobzelko.com/01202021043013-census-groups/index.html </link>
  <guid> https://jacobzelko.com/01202021043013-census-groups/index.html </guid>
  <description>
    <![CDATA[  Overview on what US Census block groups are  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Census Groups</h1>
<p><strong>Date:</strong> January 19 2021</p>
<p><strong>Summary:</strong> Overview on what US Census block groups are</p>
<p><strong>Keywords:</strong> ##zettel #census #usa #block #groups #cbgs #archive</p>
<h1>Bibliography</h1>
<p>Not available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Census block groups: Geographical units that typically contain 600–3,000 people &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Census Groups</em>. <a href="https://jacobzelko.com/01202021043013-census-groups">https://jacobzelko.com/01202021043013-census-groups</a>. January 19 2021.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; S. Chang et al., “Mobility network models of COVID-19 explain inequities and inform reopening,” Nature, vol. 589, no. 7840, pp. 82–87, Jan. 2021, doi: 10.1038/s41586-020-2923-3.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 19 Jan 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Mobility Network Models of COVID-19 Explain Inequities and Inform Reopening  ]]>
  </title>
  <link> https://jacobzelko.com/01202021043643-mobility-network-models/index.html </link>
  <guid> https://jacobzelko.com/01202021043643-mobility-network-models/index.html </guid>
  <description>
    <![CDATA[  How estimations of mobility patterns were used to estimate infections and identify disparities in Census Block Groups  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Mobility Network Models of COVID-19 Explain Inequities and Inform Reopening</h1>
<p><strong>Date:</strong> January 19 2021</p>
<p><strong>Summary:</strong> How estimations of mobility patterns were used to estimate infections and identify disparities in Census Block Groups</p>
<p><strong>Keywords:</strong> ##bibliography #places #interest #policy #bipartite #graphs #counterfactual #mobility #models  #archive</p>
<h1>Bibliography</h1>
<p>S. Chang et al., &quot;Mobility network models of COVID-19 explain inequities and inform reopening,&quot; Nature, vol. 589, no. 7840, pp. 82–87, Jan. 2021, doi: 10.1038/s41586-020-2923-3.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Points of Interest</li><li>Counterfactual Mobility Network</li><li>Limitations</li><li>Conclusions</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Iterative proportional fitting &#91;1&#93; was used to make POI –&gt; <a href="https://jacobzelko.com/01202021043013-census-groups">CBG</a> networks from SafeGraph data. SafeGraph mobility data was validated against Google mobility data.</p>
<p><em>THOUGHTS: What is iterative proportional fitting?</em></p>
<p>Model fits observed daily case counts from 8 March to 9 May 2020</p>
<h3 id="points_of_interest">Points of Interest</h3>
<p>POI hourly infection rate determined via:</p>
<ol>
<li><p>Area</p>
</li>
<li><p>Median visit duration</p>
</li>
<li><p>Time-varying density of infectious individuals</p>
</li>
</ol>
<p>Three free time-invariant parameters that scale:</p>
<ol>
<li><p>POI transmission rates</p>
</li>
<li><p>CBG transmission rates</p>
</li>
<li><p>Initial amount of exposed individuals</p>
</li>
</ol>
<p>Points of interest for this paper are such as: </p>
<ol>
<li><p>Restaurants</p>
</li>
<li><p>Grocery stores</p>
</li>
<li><p>Religious establishments</p>
</li>
</ol>
<p>Certain categories of POIs contributed far more to infections like restaurants and hotels The model predicted time-dependent variation - likely due to policy change.</p>
<p>Model can identify at-risk populations and determined that disadvantaged racial socioeconomic groups face higher rates of infection.</p>
<p><em>THOUGHTS: This conclusion seems very obvious – of course people are going to have to move and keep doing things.</em></p>
<h3 id="counterfactual_mobility_network">Counterfactual Mobility Network</h3>
<p>Counterfactual mobility network creation:</p>
<ol>
<li><p>Scaling magnitude of mobility reduction down</p>
</li>
<li><p>Positioning the model at different times</p>
</li>
<li><p>Apply model to counterfactual networks to simulate infection trajectories.</p>
</li>
</ol>
<p><em>THOUGHTS: What is a counterfactual network? I wonder in what sense they are using the word &quot;counterfactual&quot;?</em></p>
<h3 id="limitations">Limitations</h3>
<p>Limitations of dataset:</p>
<ol>
<li><p>Some populations missing</p>
</li>
<li><p>All POIs not ID&#39;d</p>
</li>
<li><p>Does not break up CBGs</p>
</li>
</ol>
<p>The model is sparse.  It does not include all real-world disease transmission variables.</p>
<h3 id="conclusions">Conclusions</h3>
<p>COVID-19 superspreader events &#91;2&#93;–&#91;5&#93; motivate risk modeling. Infection rates among different people groups &#91;6&#93;–&#91;12&#93; require modeling effects of the virus on disadvantaged groups.</p>
<p>The observed disparity was driven by a few POIs. Majority of infections from small fraction of superspreader POIs.</p>
<p>&quot;Probably because they cannot work from home as easily.&quot; &#91;10&#93;</p>
<p><em>THOUGHTS: It almost feels insulting that after this entire analysis, there is only one footnote on the topic of what people actually experience. On the flip side, I can empathize where a research group could lack time and/or means to contextualize results. Either way, it feels ripe to build on top of this work/paper to better examine the actual effects of policy adjustments and life changes.</em></p>
<p>CBGs with fewer white residents had higher predicted infection risks.</p>
<p><em>THOUGHTS: Seems somewhat odd? This is interesting to me in how they keep bringing up race or economic status as a variable, but never fully commit to an investigation. Feels really weird to talk about issues without actually addressing them.</em></p>
<p>Mobility data showed average grocery store visits from lower-income CBGs had 59&#37; more hourly visitors per square foot. Median metro area data showed they stayed 17&#37; longer.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Mobility Network Models of COVID-19 Explain Inequities and Inform Reopening</em>. <a href="https://jacobzelko.com/01202021043643-mobility-network-models">https://jacobzelko.com/01202021043643-mobility-network-models</a>. January 19 2021.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; W. E. Deming and F. F. Stephan, “On a least squares adjustment of a sampled frequency table when the expected marginal totals are known,” Ann. Math. Stat., vol. 11, no. 4, pp. 427–444, 1940.</p>
<p>&#91;2&#93; Q. Bi et al., “Epidemiology and transmission of COVID-19 in 391 cases and 1286 of their close contacts in Shenzhen, China: A retrospective cohort study,” Lancet Infect. Dis., 2020.</p>
<p>&#91;3&#93; S. Y. Park et al., “Early release-coronavirus disease outbreak in call center, south korea,” 2020.</p>
<p>&#91;4&#93; D. Adam et al., “Clustering and superspreading potential of severe acute respiratory syndrome coronavirus 2 &#40;SARS-CoV-2&#41; infections in Hong Kong,” 2020.</p>
<p>&#91;5&#93; A. Endo, S. Abbott, A. J. Kucharski, S. Funk, et al., “Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China,” Wellcome Open Res., vol. 5, no. 67, p. 67, 2020.</p>
<p>&#91;6&#93; M. Chowkwanyun and A. L. Reed Jr, “Racial health disparities and Covid-19—caution and context,” N. Engl. J. Med., 2020.</p>
<p>&#91;7&#93; C. W. Yancy, “COVID-19 and african americans,” Jama, 2020.</p>
<p>&#91;8&#93; A. van Dorn, R. E. Cooney, and M. L. Sabin, “COVID-19 exacerbating inequalities in the US,” Lancet Lond. Engl., vol. 395, no. 10232, p. 1243, 2020.</p>
<p>&#91;9&#93; M. Pareek et al., “Ethnicity and COVID-19: An urgent public health research priority,” The Lancet, vol. 395, no. 10234, pp. 1421–1422, 2020.</p>
<p>&#91;10&#93; R. Reeves and J. Rothwell, “Class and COVID: How the less affluent face double risks,” Retrieved March, vol. 30, p. 2020, 2020.</p>
<p>&#91;11&#93; S. Garg et al., “Hospitalization rates and characteristics of patients hospitalized with laboratory-confirmed coronavirus disease 2019—COVID-NET, 14 States, March 1–30, 2020,” Morb. Mortal. Wkly. Rep., vol. 69, no. 15, p. 458, 2020.</p>
<p>&#91;12&#93; C. Wilson, “These graphs show how COVID-19 is ravaging New York City’s low-income neighborhoods,” Time, 2020.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 19 Jan 2021 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  ‘The Data Is Gold, And We Are The gold-diggers&#39;: Whiteness, Race And Contemporary Academic Research In Eastern DRC  ]]>
  </title>
  <link> https://jacobzelko.com/01132021041501-gold-diggers/index.html </link>
  <guid> https://jacobzelko.com/01132021041501-gold-diggers/index.html </guid>
  <description>
    <![CDATA[  How data mining in African countries is a type of neocolonialism  ]]>
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<h1>‘The Data Is Gold, And We Are The gold-diggers&#39;: Whiteness, Race And Contemporary Academic Research In Eastern DRC</h1>
<p><strong>Date:</strong> January 12 2021</p>
<p><strong>Summary:</strong> How data mining in African countries is a type of neocolonialism</p>
<p><strong>Keywords:</strong> ##bibliography #race #whiteness #africa #data #gold  #archive</p>
<h1>Bibliography</h1>
<p>G. Marchais, P. Bazuzi, and A. Amani Lameke, &quot;‘The Data Is Gold, And We Are The gold-diggers&#39;: Whiteness, Race And Contemporary Academic Research In Eastern DRC,&quot; Critical African Studies, vol. 12, no. 3, pp. 372–394, Sep. 2020, doi: 10.1080/21681392.2020.1724806.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Background<ol><li>Review Process</li><li>Research Projects Are a Lucrative Business</li><li>Accidental Whiteness</li></ol></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="background">Background</h3>
<h4 id="review_process">Review Process</h4>
<p>First stage, a white European male&#39;s reflection on academic research in DRC and setting up Marakuja Kive Research group.  Second stage, two Congolese researchers and Marakuja Kive Research founders review ideas in initial draft.</p>
<p>Retreating to safety founded on racial inequality creates a resource for researchers to access - consciously or not. This is often hard to identify due to delicacy of research endeavors. In Africa, is race colonial legacy or a resource for projects actively relied on, or both?</p>
<h4 id="research_projects_are_a_lucrative_business">Research Projects Are a Lucrative Business</h4>
<p>International research projects are beginning to much more resemble supply chains &#91;1&#93;</p>
<p>Increased demands for data in research enabled businesses based on multi-actor business models and knowledge value chains to exist &#91;2&#93; Quantitative research is closer to the big data sector. &#91;3&#93;</p>
<p>Three main groups of people enable the collection of data. </p>
<ol>
<li><p>Western, generally white researchers control project resources; namely funding.</p>
</li>
<li><p>Non-Western associates: their work is usually hidden from outputs &#91;4&#93;, &#91;5&#93;</p>
</li>
<li><p>Subjects who are generally from lower socio-economic positioning.</p>
</li>
</ol>
<p><em>THOUGHTS: Point 1 reminds me of the Communist Manifesto by Marx on those that control the means of production.</em></p>
<p>Data derives its value from its rawness at extraction and via processing.  International academic pipeline construction is analogous to generic resource mining: </p>
<ol>
<li><p>African data is collected</p>
</li>
<li><p>Exported</p>
</li>
<li><p>Processed</p>
</li>
<li><p>Converted to high value goods &#40;papers, reports, etc.&#41;</p>
</li>
</ol>
<p>This mirrors very closely how international academic endeavors can look like a supply chain.</p>
<h4 id="accidental_whiteness">Accidental Whiteness</h4>
<p>White academics incidentally separate to give themselves a sense of racial inapplicability &#91;6&#93;, &#91;7&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>‘The Data Is Gold, And We Are The gold-diggers&#39;: Whiteness, Race And Contemporary Academic Research In Eastern DRC</em>. <a href="https://jacobzelko.com/01132021041501-gold-diggers">https://jacobzelko.com/01132021041501-gold-diggers</a>. January 12 2021.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; D. Desai and R. Tapscott, “Tomayto tomahto: The research supply chain and the ethics of knowledge production,” Humanity J. Online, 2004.</p>
<p>&#91;2&#93; F. Bédécarrats, I. Guérin, and F. Roubaud, “All that glitters is not gold. The political economy of randomized evaluations in development,” Dev. Change, vol. 50, no. 3, pp. 735–762, 2019.</p>
<p>&#91;3&#93; L. Mann, “Left to other peoples’ devices? A political economy perspective on the big data revolution in development,” Dev. Change, vol. 49, no. 1, pp. 3–36, 2018.</p>
<p>&#91;4&#93; T. Middleton and E. Pradhan, “Dynamic duos: On partnership and the possibilities of postcolonial ethnography,” Ethnography, vol. 15, no. 3, pp. 355–374, 2014.</p>
<p>&#91;5&#93; S. A. Jenkins, “Assistants, guides, collaborators, friends: The concealed figures of conflict research,” J. Contemp. Ethnogr., vol. 47, no. 2, pp. 143–170, 2018.</p>
<p>&#91;6&#93; S. Sullivan, Revealing whiteness: The unconscious habits of racial privilege. Indiana University Press, 2006.</p>
<p>&#91;7&#93; C. Mills, “White ignorance,” Race Epistemol. Ignorance, vol. 247, pp. 26–31, 2007.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 12 Jan 2021 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  As We May Think  ]]>
  </title>
  <link> https://jacobzelko.com/01112021180936-we-may-think/index.html </link>
  <guid> https://jacobzelko.com/01112021180936-we-may-think/index.html </guid>
  <description>
    <![CDATA[  An overview on Vannevar Bush&#39;s concept of a memex and additional thoughts on the issue of information overload  ]]>
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<h1>As We May Think</h1>
<p><strong>Date:</strong> January 11 2021</p>
<p><strong>Summary:</strong> An overview on Vannevar Bush&#39;s concept of a memex and additional thoughts on the issue of information overload</p>
<p><strong>Keywords:</strong> ##bibliography #memex #thinking #knowledge #management #archive</p>
<h1>Bibliography</h1>
<p>V. Bush and others, &quot;As we may think,&quot; The Atlantic monthly, vol. 176, no. 1, pp. 101–108, 1945.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>The Failure of the Publication Machine</li><li>The idea of Automated Knowledge Systems</li><li>Regarding Thought</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="the_failure_of_the_publication_machine">The Failure of the Publication Machine</h3>
<p>Publication has been extended beyond usefulness of the record. Current methods for finding relevant information is impractical.</p>
<p><em>THOUGHTS: Very convicting retrospection on how we handle copious amounts of information. A record which contains too little information is not informative and one that contains too much is overwhelming.</em></p>
<p>Those who try to stay current with research may have difficulty to recall last month&#39;s material studied.</p>
<p><em>THOUGHTS: This is so convicting&#33; Even though it is a nearly 80 year old paper, the problems that he discusses are still in existence&#33;  The problem of having too many papers and the inability to extract the truly worthwhile pieces of information are still present.</em></p>
<h3 id="the_idea_of_automated_knowledge_systems">The idea of Automated Knowledge Systems</h3>
<p>When one associates information along logical processes, creativity is limited to data selection to match a process. After this initial surge of creativity, the work is fit for automation</p>
<h3 id="regarding_thought">Regarding Thought</h3>
<p>There exist no substitute for nuanced thinking. Imagination and repetitious thinking are diverse. Repetitive thought is much easier automated.</p>
<p><em>THOUGHTS: I like this notion of repetitive thought. As much as there are repetitive thought, there are repetitive actions accordingly.</em></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>As We May Think</em>. <a href="https://jacobzelko.com/01112021180936-we-may-think">https://jacobzelko.com/01112021180936-we-may-think</a>. January 11 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 11 Jan 2021 00:00:00 +0000</pubDate>  
  
  
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  <title>
    <![CDATA[  Divide and Conquer Algorithmic Design  ]]>
  </title>
  <link> https://jacobzelko.com/01072021062203-divide-conquer/index.html </link>
  <guid> https://jacobzelko.com/01072021062203-divide-conquer/index.html </guid>
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    <![CDATA[  The divide and conquer design paradigm to break down a problem to smaller parts and rebuild it to a solution  ]]>
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<h1>Divide and Conquer Algorithmic Design</h1>
<p><strong>Date:</strong> January 7 2021</p>
<p><strong>Summary:</strong> The divide and conquer design paradigm to break down a problem to smaller parts and rebuild it to a solution</p>
<p><strong>Keywords:</strong> ##zettel #computer #science #algorithm #design #divide #conquer #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>&quot;Divide-and-Conquer&quot;: an algorithm design paradigm comprised of three steps </p>
<ol>
<li><p>Break a problem into smaller subproblems</p>
</li>
<li><p>Recursively evaluate subproblems</p>
</li>
<li><p>Combine subproblem solutions to one solution for the original problem.</p>
</li>
</ol>
<p>One example of this paradigm is <a href="https://jacobzelko.com/12192020184204-merge-sort">Merge Sort</a>.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Divide and Conquer Algorithmic Design</em>. <a href="https://jacobzelko.com/01072021062203-divide-conquer">https://jacobzelko.com/01072021062203-divide-conquer</a>. January 7 2021.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; T. Roughgarden, Algorithms illuminated. Part 1: The Basics. San Francisco, CA: Soundlikeyourself Publishing, 2017.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 07 Jan 2021 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  Loop Invariants  ]]>
  </title>
  <link> https://jacobzelko.com/01072021071650-loop-invariants/index.html </link>
  <guid> https://jacobzelko.com/01072021071650-loop-invariants/index.html </guid>
  <description>
    <![CDATA[  Statements used to show the correctness of an algorithm  ]]>
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<h1>Loop Invariants</h1>
<p><strong>Date:</strong> January 7 2021</p>
<p><strong>Summary:</strong> Statements used to show the correctness of an algorithm</p>
<p><strong>Keywords:</strong> ##zettel #computer #science  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p><strong>Loop Invariant:</strong> a statement which explains why an algorithm is correct. &#91;1&#93;</p>
<p>It is comprised of three steps: Initialization: The statement is valid before the first iteration of the loop. Maintenance: If it is true before a loop iteration, it remains true throughout the loop. Termination: At the loop&#39;s end, the invariant yields a property to aid in showing the algorithm works expectedly.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Loop Invariants</em>. <a href="https://jacobzelko.com/01072021071650-loop-invariants">https://jacobzelko.com/01072021071650-loop-invariants</a>. January 7 2021.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; T. H. Cormen, Ed., Introduction to algorithms, 3rd ed. Cambridge, Mass: MIT Press, 2009.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 07 Jan 2021 00:00:00 +0000</pubDate>  
  
  
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  <title>
    <![CDATA[  The Book of Why  ]]>
  </title>
  <link> https://jacobzelko.com/01072021082043-book-of-why/index.html </link>
  <guid> https://jacobzelko.com/01072021082043-book-of-why/index.html </guid>
  <description>
    <![CDATA[  How causality gives us tools to understand the question of cause-and-effect and confounders  ]]>
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    <![CDATA[  
<h1>The Book of Why</h1>
<p><strong>Date:</strong> January 7 2021</p>
<p><strong>Summary:</strong> How causality gives us tools to understand the question of cause-and-effect and confounders</p>
<p><strong>Keywords:</strong> ##bibliography #causality #diagrams #counterfactual #statistics #graphs ##book ##blog #archive</p>
<h1>Bibliography</h1>
<p>J. Pearl and D. Mackenzie, The book of why: the new science of cause and effect, First edition. New York: Basic Books, 2018.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Benefits of Causal Analysis</li><li>Critiques of Statistics</li><li>Causal Calculus</li><li>Inference Engine</li><li>Ladder of Causality</li><li>Mini-Turing Test</li><li>Bayesian Analysis</li><li>Causal Diagrams<ol><li>Paths in Path Diagrams<ol><li>Chain junction</li><li>Fork Junction</li><li>Collider Junction</li></ol></li><li>Lessons from Path Diagrams</li></ol></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>This book shows that data is stupid. Data can record events but cannot answer why any of the events are the way they are.</p>
<p>Causal inference posits the brain as the most advanced tool for understanding cause and effect.</p>
<p>Forcing an occurrence means to submit it to one influence to trigger the desired event</p>
<p><strong>Counterfactual:</strong> When scientific inquiry involves retrospective reflection. &quot;Why?&quot; is a counterfactual question.</p>
<p>Probabilities encode our beliefs about a static world. Causality explains probabilities in a changing world.</p>
<h3 id="benefits_of_causal_analysis">Benefits of Causal Analysis</h3>
<p>Create a smoother human-machine interface.</p>
<p><em>THOUGHTS: I wonder if that is what attracted me to the idea of Causal Inference - that it enables better human-machine interfaces. Like human-machine interaction as a discipline; I wonder if they have much in this area. Perhaps reach out to Valentine Wilson about the question?</em></p>
<h3 id="critiques_of_statistics">Critiques of Statistics</h3>
<p>Galton separated causation from statistics in 1889 causing the two separate fields to fully manifest.</p>
<p>&quot;Granger causality&quot; and &quot;vector autocorrelation&quot; exists to accommodate for causal explanations. Associated Thoughts: Judea&#39;s critique on probability-based causality</p>
<h3 id="causal_calculus">Causal Calculus</h3>
<p>Causal calculus uses two communications forms: </p>
<ol>
<li><p>Causal Diagrams: communicates what is known.</p>
</li>
<li><p>Symbolic language: defines what is wanted to be known</p>
</li>
</ol>
<h3 id="inference_engine">Inference Engine</h3>
<p>The inference engine assumes perfect and unlimited data for the given figure:</p>
<p><img src="https://jacobzelko.com/assets/01082021030619-inference-engine.png" alt="" /></p>
<p><strong>Estimand:</strong> generalized mathematical formula to answer data questions. A statistical quantity estimated from data that can represent an answer to a query.</p>
<p>A given estimand is computed on the basis of the causal model alone, prior to an examination of the specifics of the data. This gives the inference engine better adaptibility.</p>
<p><strong>Binary Evaluation of Query:</strong> determines if a query can be answered under an existing causal model.</p>
<p><strong>Knowledge:</strong> experience from the past such as prior observations and education.</p>
<p><strong>Assumptions:</strong> explicit statements from available Knowledge.</p>
<p><strong>Queries:</strong> the scientific questions to be answered.</p>
<p><strong>Testable Implications:</strong> observable patterns or dependencies resulting from the listening pattern of a causal model.</p>
<p><strong>Estimate:</strong> Estimate for the answer is determined alongside uncertainty metrics.The metrics reflect limited data, measurement errors, or missing data.</p>
<h3 id="ladder_of_causality">Ladder of Causality</h3>
<p>First rung: observation. This concerns recognition of patterns. This rung asks, &quot;What if I see ...?&quot;</p>
<p>The second rung: Doing. Altering an environment to achieve a certain goal. This rung poses the questions of &quot;What if we do...?&quot; or &quot;How?&quot;</p>
<h3 id="mini-turing_test">Mini-Turing Test</h3>
<p>Mini-Turing Test: Encode a simple story on a machine and see if it can answer causal questions a human can answer.</p>
<p>Rules:</p>
<ol>
<li><p>Limited only to causal reasoning and language.</p>
</li>
<li><p>The story can be encoded in the easiest way for the programmer.</p>
</li>
</ol>
<h3 id="bayesian_analysis">Bayesian Analysis</h3>
<p>Simplified Bayesian analysis: prior belief &#43; new evidence &#61; revised belief.</p>
<p>Bayesian inference enables one to express personal experiences mathematically and combine it with data in a principled and transparent way.</p>
<h3 id="causal_diagrams">Causal Diagrams</h3>
<p>&quot;Causation&quot; via a causal diagram is straightforward. A variable X is a cause of Y if Y listens to X. Y&#39;s value is determined by what it hears.</p>
<h4 id="paths_in_path_diagrams">Paths in Path Diagrams</h4>
<h5 id="chain_junction">Chain junction</h5>
\[
A \rightarrow B \rightarrow C
\]
<p>B is the mediator which relays the effect of A to C. B filters information about A from C.</p>
<h5 id="fork_junction">Fork Junction</h5>
\[
A \leftarrow B \rightarrow C
\]
<p>B is a confounder of A and C. B makes A and C statistically correlated despite no direct link between them.</p>
<h5 id="collider_junction">Collider Junction</h5>
\[
A \rightarrow B \leftarrow C
\]
<p>Conditioning on B will make A and C dependent</p>
<h4 id="lessons_from_path_diagrams">Lessons from Path Diagrams</h4>
<ol>
<li><p>Causal analysis allows us to quantify real world processes</p>
</li>
<li><p>Path analysis draws conclusions about individual causal relationships by examining the diagram as a whole.</p>
</li>
<li><p>Two people creating differing causal diagrams for the same data and may not arrive at the same result.</p>
</li>
</ol>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>The Book of Why</em>. <a href="https://jacobzelko.com/01072021082043-book-of-why">https://jacobzelko.com/01072021082043-book-of-why</a>. January 7 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 07 Jan 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Independent Component Analysis  ]]>
  </title>
  <link> https://jacobzelko.com/01072021054854-independent-component-analysis/index.html </link>
  <guid> https://jacobzelko.com/01072021054854-independent-component-analysis/index.html </guid>
  <description>
    <![CDATA[  What independent component analysis is  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Independent Component Analysis</h1>
<p><strong>Date:</strong> January 7 2021</p>
<p><strong>Summary:</strong> What independent component analysis is</p>
<p><strong>Keywords:</strong> ##zettel #mathematics #analysis #independent #component #analysis #speech #fmri #noise #separation #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>ICA seeks to minimize mutual information between projections.Independent component analysis finds a coordinate frame onto which the projection of the data has minimal temporal overlap. &#91;1&#93;</p>
<p>ICA is considered a linear decomposition alternative to principal component analysis &#40;PCA&#41;. In PCA, the data is represented using perpendicular axes. ICA is not limited by this constraint &#91;2&#93;</p>
<p>ICA has been applied to domains such as:</p>
<ul>
<li><p>fMRI</p>
</li>
<li><p>performing speech</p>
</li>
<li><p>noise separation &#91;3&#93;</p>
</li>
</ul>
<p>ICA decompositions are best for sources linearly mixed in a recorded signal.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Independent Component Analysis</em>. <a href="https://jacobzelko.com/01072021054854-independent-component-analysis">https://jacobzelko.com/01072021054854-independent-component-analysis</a>. January 7 2021.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; A. Delorme, S. Makeig, M. Fabre-Thorpe, and T. Sejnowski, “From single-trial EEG to brain area dynamics,” Neurocomputing, vol. 44–46, pp. 1057–1064, Jun. 2002, doi: 10.1016/S0925-2312&#40;02&#41;00415-0.</p>
<p>&#91;2&#93; S. Makeig et al., “Functionally independent components of the late positive event-related potential during visual spatial attention,” J. Neurosci., vol. 19, no. 7, pp. 2665–2680, 1999.</p>
<p>&#91;3&#93; H.-M. Park, H.-Y. Jung, T.-W. Lee, and S.-Y. Lee, “Subband-based blind signal separation for noisy speech recognition,” Electron. Lett., vol. 35, no. 23, pp. 2011–2012, 1999.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 07 Jan 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Random Access Machine &#40;RAM&#41; Model  ]]>
  </title>
  <link> https://jacobzelko.com/01072021072613-random-access-model/index.html </link>
  <guid> https://jacobzelko.com/01072021072613-random-access-model/index.html </guid>
  <description>
    <![CDATA[  Modeling computational actions as single step actions  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Random Access Machine &#40;RAM&#41; Model</h1>
<p><strong>Date:</strong> January 7 2021</p>
<p><strong>Summary:</strong> Modeling computational actions as single step actions</p>
<p><strong>Keywords:</strong> ##zettel #random #access #machine #model #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Properties of RAM<ol><li>Step Execution of Times</li><li>Data Types</li></ol></li><li>Algorithmic Analysis within the RAM Model</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p><strong>Random Access Machine &#40;RAM&#41; Model:</strong> instructions are executed contiguously without concurrency. &#91;1&#93;</p>
<h3 id="properties_of_ram">Properties of RAM</h3>
<h4 id="step_execution_of_times">Step Execution of Times</h4>
<p>RAM concerns common real-world instructions executed at constant times: </p>
<ol>
<li><p>Arithmetic:</p>
<ul>
<li><p>Add</p>
</li>
<li><p>Subtract</p>
</li>
<li><p>Multiply</p>
</li>
<li><p>Divide</p>
</li>
<li><p>Remainder</p>
</li>
<li><p>Floor</p>
</li>
<li><p>Ceiling</p>
</li>
</ul>
</li>
<li><p>Data Movement</p>
<ul>
<li><p>Loading</p>
</li>
<li><p>Storing</p>
</li>
<li><p>Copying</p>
</li>
</ul>
</li>
<li><p>Control flow </p>
<ul>
<li><p>Conditionals and unconditional branches</p>
</li>
<li><p>Subroutine calls</p>
</li>
<li><p>Returns</p>
</li>
</ul>
</li>
</ol>
<h4 id="data_types">Data Types</h4>
<ul>
<li><p>The RAM model concerns integers and floating points for real number representation.</p>
</li>
<li><p>A limit on the size of each word of data is assumed.</p>
</li>
<li><p>The memory hierarchy &#40;i.e. model caches or virtual memory on modern computers&#41; is not modeled.</p>
</li>
</ul>
<h3 id="algorithmic_analysis_within_the_ram_model">Algorithmic Analysis within the RAM Model</h3>
<p><strong>Algorithm analysis:</strong> predicting the resources an algorithm requires.Computational time is what is commonly measured. Memory, hardware, or bandwidth are sometimes also analyzed. &#91;1&#93;</p>
<p><strong>Running time:</strong> the number of basic operations executed in an algorithm. In the RAM model, each executed line takes the constant time ci.</p>
<p>Generally, time taken by an algorithm grows in proportion to the size of the input. &#91;1&#93; Definitions for input size depend on what is studied:</p>
<ul>
<li><p>The number of items in the input</p>
</li>
<li><p>The total number of bits needed to represent the input in binary notation</p>
</li>
<li><p>Numbers of vertices and edges in a graph</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Random Access Machine &#40;RAM&#41; Model</em>. <a href="https://jacobzelko.com/01072021072613-random-access-model">https://jacobzelko.com/01072021072613-random-access-model</a>. January 7 2021.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; T. H. Cormen, Ed., Introduction to algorithms, 3rd ed. Cambridge, Mass: MIT Press, 2009.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 07 Jan 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Electronic Health Records  ]]>
  </title>
  <link> https://jacobzelko.com/01082021031034-electronic-health-records/index.html </link>
  <guid> https://jacobzelko.com/01082021031034-electronic-health-records/index.html </guid>
  <description>
    <![CDATA[  An overview of Electronic Health Records  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Electronic Health Records</h1>
<p><strong>Date:</strong> January 7 2021</p>
<p><strong>Summary:</strong> An overview of Electronic Health Records</p>
<p><strong>Keywords:</strong> ##zettel #ehr #healthcare #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Assessment of EHRs</li><li>Limitations of EHRs</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="assessment_of_ehrs">Assessment of EHRs</h3>
<p>US Department of Health and Human Services&#39; &#40;HHS&#41; Office of the National Coordinator of Health Information Technology &#40;ONC&#41; specifies standards for EHR systems. This is to ensure that EHRs meet &quot;Meaningful Use&quot; criteria.</p>
<p>EHR data is generally from patients who have the means of seeing a provider. &#91;1&#93; This data may be available from different encounters. Examples include:</p>
<ul>
<li><p>Inpatient</p>
</li>
<li><p>Outpatient</p>
</li>
<li><p>Emergency department visits</p>
</li>
</ul>
<h3 id="limitations_of_ehrs">Limitations of EHRs</h3>
<p>EHRs are not optimized for secondary uses. They have multiple limitations for research &#91;1&#93;, &#91;2&#93; EHR data is recorded during healthcare visitations. As a result, bias can favor those sicker in datasets. This results in what is known as informative censoring &#91;1&#93;, &#91;3&#93;, &#91;4&#93; It is important to distinguish between &quot;not present&quot; in datasets versus &quot;did not assess&quot;.</p>
<p>Errors propagate EHRs and ancillary sources. Data is entered by providers during visitation or memory. &#91;1&#93;</p>
<p>Healthcare standards change over time. Collection standards vary by location. Much data is unstructured and narrative in nature. <a href="https://jacobzelko.com/01112021180936-we-may-think">Vannevar Bush article &quot;As We May Think&quot;</a> also has relation to this very same issue. Regarding how clinicians&#39; recall or anyone&#39;s recall of an incident from more than a few days ago may be impossible. There are analogies between the two disparate lines of thought: one clinical, the other academic: both overwhelming.</p>
<p>Only a few data fields are common across different EHRs. Most phenotype definitions use combinations of:</p>
<ul>
<li><p>ICD-9 codes</p>
</li>
<li><p>Medication names</p>
</li>
<li><p>Laboratory tests.</p>
</li>
</ul>
<p>EHRs will use ICD-10 codes for diagnoses and potentially SNOMED-CT codes for problem lists and other aspects of EHRs.  EHRs also consist of free form text where Natural Language Processing could be of use. &#91;5&#93; ICD-9-CM diagnosis codes can be found in technical billing, professional billing, and/or problem lists.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Electronic Health Records</em>. <a href="https://jacobzelko.com/01082021031034-electronic-health-records">https://jacobzelko.com/01082021031034-electronic-health-records</a>. January 7 2021.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; R. Richesson and M. Smerek, “Electronic health records-based phenotyping,” Rethink. Clin. Trials Living Textb. Pragmatic Clin. Trials, vol. 2016, 2014.</p>
<p>&#91;2&#93; K. B. Bayley, T. Belnap, L. Savitz, A. L. Masica, N. Shah, and N. S. Fleming, “Challenges in using electronic health record data for CER: Experience of 4 learning organizations and solutions applied,” Med. Care, pp. S80–S86, 2013.</p>
<p>&#91;3&#93; W. J. Shih, “Problems in dealing with missing data and informative censoring in clinical trials,” Curr. Control. Trials Cardiovasc. Med., vol. 3, no. 1, pp. 1–7, 2002.</p>
<p>&#91;4&#93; N. R. Council et al., The prevention and treatment of missing data in clinical trials. National Academies Press, 2010.</p>
<p>&#91;5&#93; J. F. Ludvigsson et al., “Use of computerized algorithm to identify individuals in need of testing for celiac disease,” J. Am. Med. Inform. Assoc., vol. 20, no. e2, pp. e306–e310, 2013.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 07 Jan 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Timing of State and Territorial COVID-19 Stay-at-Home Orders and Changes in Population Movement — United States, March 1–May 31, 2020  ]]>
  </title>
  <link> https://jacobzelko.com/01072021062915-mobility-patterns-gtri/index.html </link>
  <guid> https://jacobzelko.com/01072021062915-mobility-patterns-gtri/index.html </guid>
  <description>
    <![CDATA[  How population mobility was affected by US mandates for stay-at-home orders  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Timing of State and Territorial COVID-19 Stay-at-Home Orders and Changes in Population Movement — United States, March 1–May 31, 2020</h1>
<p><strong>Date:</strong> January 7 2021</p>
<p><strong>Summary:</strong> How population mobility was affected by US mandates for stay-at-home orders</p>
<p><strong>Keywords:</strong> ##bibliography #covid #population #dynamics #gtri #cdc #mmwr #dataset #agriculture #rural #urban #archive</p>
<h1>Bibliography</h1>
<p>A. Moreland et al., &quot;Timing of State and Territorial COVID-19 Stay-at-Home Orders and Changes in Population Movement — United States, March 1–May 31, 2020,&quot; MMWR Morb. Mortal. Wkly. Rep., vol. 69, no. 35, pp. 1198–1203, Sep. 2020, doi: 10.15585/mmwr.mm6935a2.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Methods and Materials<ol><li>Classifying Stay-at-Home Orders</li><li>Determining Time Windows</li><li>Analyzing for Changes in Population Movement Patterns</li></ol></li><li>Discussion<ol><li>General Insights</li><li>Limitations of this analysis</li></ol></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion</li></ol></div>
<h3 id="methods_and_materials">Methods and Materials</h3>
<p>Changes in population movement based on stay-at-home orders between March 1–May 31, 2020 given by all 50 states, the District of Columbia, and five U.S. territories were examined.</p>
<h4 id="classifying_stay-at-home_orders">Classifying Stay-at-Home Orders</h4>
<p>Coding of orders was based solely on the legal language in each state or territorial order. Stay-at-home orders were assigned a mutually exclusive category based on this language:</p>
<ol>
<li><p>All required &#40;language examples: persons &quot;shall,&quot; &quot;must,&quot; or &quot;are directed to&quot;&#41;</p>
</li>
<li><p>Applied to persons in specific jurisdictions&#39; locations &#40;language examples: persons &quot;shall,&quot; &quot;must,&quot; or &quot;are directed to&quot;&#41;</p>
</li>
<li><p>Required for individuals &gt; 65 years or with underlying conditions</p>
</li>
<li><p>Mandatory for individuals &gt; 65 years or with underlying conditions in specific jurisdictions&#39; locations</p>
</li>
<li><p>Not required but advised to stay home &#40;language examples: persons &quot;should,&quot; &quot;are encouraged to,&quot; or &quot;are urged to&quot;&#41;</p>
</li>
<li><p>Jurisdictions that did not issue an order were coded as having no state- or territory-issued order</p>
</li>
</ol>
<h4 id="determining_time_windows">Determining Time Windows</h4>
<p>Given a state &quot;s&quot; that issues a stay-at-home order at date &quot;t&quot;, pre- and post-order windows for each county, &quot;c&quot;, in a state can be defined. c&#39;s preorder window contains movement values, m, during the time period before, t. The postorder window contains m values during the time period after t. Each county&#39;s preorder window serves as a county- and COVID-specific baseline. Small time values observed during these periods reflect county-specific invariants and impacts of the pandemic on behavior in the absence of state- or territory-issued community mitigation policies. ***QUESTION:** What is a sufficiently small value of n-days &#40;or time period before and after t&#41;?* ***QUESTION:** What is a county-specific invariant?*</p>
<p>Order index date types:</p>
<ol>
<li><p>Start of each state or territorial stay-at-home order for each jurisdiction&#39;s counties</p>
</li>
<li><p>Waning or end of each state or territorial stay-at-home order for each jurisdiction&#39;s counties</p>
</li>
<li><p>Date of the first state stay-at-home order</p>
</li>
<li><p>Date of the first termination of a state stay-at-home order</p>
</li>
</ol>
<h4 id="analyzing_for_changes_in_population_movement_patterns">Analyzing for Changes in Population Movement Patterns</h4>
<p>Counties were broken into rural-urban categories to ensure groupings of counties with similar population sizes. Box plots were constructed for each category to examine the distribution of county mean percentages of devices at home during the pre- and postorder periods associated with each index date. Movement values following a normal distribution was not assumed for all counties and periods.  A clustered Wilcoxon signed rank test was then performed, with counties as clusters, on the constituent counties&#39; median pre- and post-order values associated with each index date. A lower-tailed test was used for dates regarding the start of regional mandates. An upper-tailed test was used for dates recording the end of regional mandates. Strata-level statistical significance was assessed at the 99&#37; confidence level &#40;alpha &#61; 0.01&#41;. <em>Dataset used: <a href="https://www.ers.usda.gov/data-products/rural-urban-continuum-codes/documentation/">The U.S. Department of Agriculture&#39;s Rural-Urban Continuum Codes</a> are used to stratify counties in this analysis</em> <strong>QUESTION:</strong> What is a &quot;clustered Wilcoxon signed rank test&quot;?_</p>
<p>Population movement was inferred via the percentage of individual devices reported each day that were home for each county. A 7-day rolling average was used to smooth each county&#39;s pre- and postorder time series values ***QUESTION:** I wonder how good a metric this observation serves as a proxy of measuring population movement?*</p>
<h3 id="discussion">Discussion</h3>
<h4 id="general_insights">General Insights</h4>
<p>Regions which issued stay-at-home mandates saw general declines in population movement. At the same time as the first state relaxed their mandate, regions that had not relaxed their mandates saw increased population movement. Stay-at-home orders can reduce activities associated with community spread of COVID-19. This includes population movement and external person-to-person contact.</p>
<h4 id="limitations_of_this_analysis">Limitations of this analysis</h4>
<ol>
<li><p>Device coverage correlates with US pop density.</p>
</li>
</ol>
<p>However, certain regions or groups might be inequitably represented. ***QUESTION:** How does relative device coverage largely correlate with US pop density?*</p>
<ol start="2">
<li><p>People may have multiple mobile devices and might take any number of them when they leave home.</p>
</li>
<li><p>The clustered Wilcoxon signed rank test is used with counties as clusters.</p>
</li>
</ol>
<p>This is because a county&#39;s median pre- and postorder values are paired comparisons. Possible spatial dependence between counties wasn&#39;t addressed.</p>
<ol start="4">
<li><p>The report does not account for nationwide protests affects on mobility patterns.</p>
</li>
<li><p>The only relationship analyzed was between stay-at-home orders and population movement.</p>
</li>
</ol>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Timing of State and Territorial COVID-19 Stay-at-Home Orders and Changes in Population Movement — United States, March 1–May 31, 2020</em>. <a href="https://jacobzelko.com/01072021062915-mobility-patterns-gtri">https://jacobzelko.com/01072021062915-mobility-patterns-gtri</a>. January 7 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion__2">Discussion</h2>
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  <pubDate>Thu, 07 Jan 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
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<item>
  <title>
    <![CDATA[  What Are Computable Phenotypes?  ]]>
  </title>
  <link> https://jacobzelko.com/01072021074632-computable-phenotypes/index.html </link>
  <guid> https://jacobzelko.com/01072021074632-computable-phenotypes/index.html </guid>
  <description>
    <![CDATA[  An overview into what computable phenotypes are and how they are used.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>What Are Computable Phenotypes?</h1>
<p><strong>Date:</strong> January 7 2021</p>
<p><strong>Summary:</strong> An overview into what computable phenotypes are and how they are used.</p>
<p><strong>Keywords:</strong> ##zettel #ehr #electronic #health #records #computable #phenotypes #codes #icd-9 #icd-10 #snomed-ct #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Operational Definitions</li><li>Computable Phenotypes Definitions<ol><li>Creating Computable Phenotypes</li><li>Characteristics of a Good Phenotype Definitions</li><li>Determining the Validity of a Phenotype Definition</li></ol></li><li>Available Phenotype Definitions</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="operational_definitions">Operational Definitions</h3>
<p><strong>Phenotype:</strong> a measurable biological, behavioral, or cognitive marker found more often in specific individuals than the general population; the appearance it presents to observers.&#91;1&#93;</p>
<p><a href="https://jacobzelko.com/./08122022205622-assessing-phenotype-fairness"><strong>Phenotyping:</strong></a> Identifying a set of patients with a particular disease </p>
<p><strong>Computable phenotype:</strong> a clinical element that can derived from queries to an EHR or ancillary data sources &#40;such as claims data, or disease registries&#41; using a defined set of data elements and logical expressions.  It does not require chart review or interpretation by a clinician. </p>
<p><strong>Data element:</strong> the unit of data being queried, exchanged, or analyzed. It includes:</p>
<ul>
<li><p>Descriptive name for the concept</p>
</li>
<li><p>A specified value set</p>
</li>
<li><p>Additional metadata</p>
</li>
</ul>
<p><strong>Value set:</strong> the set of possible information associated with a particular data element. &#91;2&#93;</p>
<p><strong>Metadata:</strong> descriptive data about objects, including data objects; data about data.</p>
<h3 id="computable_phenotypes_definitions">Computable Phenotypes Definitions</h3>
<p><strong>Computable phenotype definitions:</strong> classifying individuals with a given characteristic of interest from EHRs. Done by using data routinely collected in EHRs or ancillary data sources &#40;such as claims data, or disease registries&#41;.</p>
<p>Computable phenotype definitions enable reproducible queries of EHRs. They are made of data elements and boolean operators which are executed by a computer. Furthermore, they rely on value sets derived from standardized coding systems.</p>
<p>These definitions help identify people with particular conditions across healthcare organizations by using common definitions. Standard phenotype definitions can enable direct identification of cohorts. This allows decision-makers to specifically target screening tests and interventions to such cohorts.</p>
<h4 id="creating_computable_phenotypes">Creating Computable Phenotypes</h4>
<ol>
<li><p>Define how a concept should be studied given available data.</p>
</li>
<li><p>Identify which diagnoses, treatments, and patient characteristics suggest a condition of interest.</p>
</li>
<li><p>Specify clinical condition being searched for and how that would be represented in various EHRs.</p>
</li>
</ol>
<h4 id="characteristics_of_a_good_phenotype_definitions">Characteristics of a Good Phenotype Definitions</h4>
<ol>
<li><p>Does not conflict with a previously pre-defined phenotype definitions</p>
</li>
<li><p>Details of a definition need be communicated.</p>
</li>
</ol>
<p>It should enable reproducible queries in other contexts.</p>
<ol start="3">
<li><p>They must always yield similar results given same data; be reliable.</p>
</li>
<li><p>Assess implementation for a given setting</p>
</li>
<li><p>Phenotype definition must be compared using available clinical gold standard.</p>
</li>
</ol>
<h4 id="determining_the_validity_of_a_phenotype_definition">Determining the Validity of a Phenotype Definition</h4>
<ol>
<li><p>Ability to correctly identify which individuals exhibit the phenotype.</p>
</li>
</ol>
<h3 id="available_phenotype_definitions">Available Phenotype Definitions</h3>
<p>This paper contains a plethora of resources regarding phenotype definitions:</p>
<blockquote>
<p>R. Richesson and M. Smerek, &quot;Electronic health records-based phenotyping,&quot; Rethinking clinical trials: A living textbook of pragmatic clinical trials, vol. 2016, 2014.</p>
</blockquote>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Are Computable Phenotypes?</em>. <a href="https://jacobzelko.com/01072021074632-computable-phenotypes">https://jacobzelko.com/01072021074632-computable-phenotypes</a>. January 7 2021.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; R. Richesson and M. Smerek, “Electronic health records-based phenotyping,” Rethink. Clin. Trials Living Textb. Pragmatic Clin. Trials, vol. 2016, 2014.</p>
<p>&#91;2&#93; “NIH Common Data Elements &#40;CDE&#41; Repository.” https://cde.nlm.nih.gov/home &#40;accessed Dec. 30, 2020&#41;.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 07 Jan 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Anticipatory Biasing of Visuospatial Attention Indexed by Retinotopically Specific α-Bank Electroencephalography Increases over Occipital Cortex  ]]>
  </title>
  <link> https://jacobzelko.com/01062021042121-anticipatory-biasing/index.html </link>
  <guid> https://jacobzelko.com/01062021042121-anticipatory-biasing/index.html </guid>
  <description>
    <![CDATA[  How EEGs were used to measure brain activity in this study  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Anticipatory Biasing of Visuospatial Attention Indexed by Retinotopically Specific α-Bank Electroencephalography Increases over Occipital Cortex</h1>
<p><strong>Date:</strong> January 6 2021</p>
<p><strong>Summary:</strong> How EEGs were used to measure brain activity in this study</p>
<p><strong>Keywords:</strong> ##bibliography #archive</p>
<h1>Bibliography</h1>
<p>M. S. Worden, J. J. Foxe, N. Wang, and G. V. Simpson, &quot;Anticipatory Biasing of Visuospatial Attention Indexed by Retinotopically Specific α-Bank Electroencephalography Increases over Occipital Cortex,&quot; J. Neurosci., vol. 20, no. 6, pp. RC63–RC63, Mar. 2000, doi: 10.1523/JNEUROSCI.20-06-j0002.2000.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Materials and Methods</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="materials_and_methods">Materials and Methods</h3>
<p>EEGs from 128 tin electrodes, referenced to the nose. Data acquired at 500 Hz &#40;pass band of DC, 100 Hz&#41;, impedances &lt; 10 KOhms, and interelectrode spacing at 2.4 cm. Eye position monitored with electrooculographic recordings from the external canthi. Eye movements and artifacts were removed off-line.</p>
<p><em>QUESTION: How was it referenced to the nose?  QUESTION: What is an electrooculographic recording? QUESTION: Where is the external canthi?</em></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Anticipatory Biasing of Visuospatial Attention Indexed by Retinotopically Specific α-Bank Electroencephalography Increases over Occipital Cortex</em>. <a href="https://jacobzelko.com/01062021042121-anticipatory-biasing">https://jacobzelko.com/01062021042121-anticipatory-biasing</a>. January 6 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Wed, 06 Jan 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Mathematical Sums and Series  ]]>
  </title>
  <link> https://jacobzelko.com/01042021224715-sums-series/index.html </link>
  <guid> https://jacobzelko.com/01042021224715-sums-series/index.html </guid>
  <description>
    <![CDATA[  Mathematical sums and series which are commonly used to assess complexity and create relationships  ]]>
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<h1>Mathematical Sums and Series</h1>
<p><strong>Date:</strong> January 4 2021</p>
<p><strong>Summary:</strong> Mathematical sums and series which are commonly used to assess complexity and create relationships</p>
<p><strong>Keywords:</strong> ##summary #mathematics #sums #series #arithmetic #geometric #sequence #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<ul>
<li><p><a href="https://jacobzelko.com/01052021044121-arithmetic-series">Arithmetic Sums &amp; Series</a> - A brief overview on what arithmetic series are and some of its underlying math.</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Mathematical Sums and Series</em>. <a href="https://jacobzelko.com/01042021224715-sums-series">https://jacobzelko.com/01042021224715-sums-series</a>. January 4 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 04 Jan 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Arithmetic Sums &amp; Series  ]]>
  </title>
  <link> https://jacobzelko.com/01052021044121-arithmetic-series/index.html </link>
  <guid> https://jacobzelko.com/01052021044121-arithmetic-series/index.html </guid>
  <description>
    <![CDATA[  A brief overview on what arithmetic series are and some of its underlying math.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Arithmetic Sums &amp; Series</h1>
<p><strong>Date:</strong> January 4 2021</p>
<p><strong>Summary:</strong> A brief overview on what arithmetic series are and some of its underlying math.</p>
<p><strong>Keywords:</strong> ##zettel #arithmetic #sums #series #proof  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>An arithmetic sequence is one which the difference between one term and the next only differs by a constant. One example is this:</p>
\[
1+2+3+\cdots+n
\]
<p>where the difference between each proceeding term is the constant value, 1.</p>
<p>An arithmetic series is one in which values in an arithmetic sequence are summed together:</p>
\[
\sum_{k=1}^{n} k=1+2+\cdots+n
\]
<p>This is a visual proof of the Arithmetic Series algorithm:</p>
<p><img src="01052021044019-pwow-arithmetic-mean.png" alt="" /></p>
<p>A formalization of the above is:</p>
\[
\sum_{k=1}^{n} = \frac{n(a_{1} + a_{n})}{2}
\]
<p>which is equivalent to:</p>
\[
\sum_{k=1}^{n} = \frac{a_{n}(a_{1} + a_{n})}{2}
\]
<p>The latter formalization is somewhat more common and it works as \(a_{n}\) gives the same values as what the size of the sequence is which is \(n\). From the visual proof, the \(\frac{n}{2}\) constant comes from halving the size of each region.</p>
<p>&#40;Thanks to Mark Kittisopikul, Yingbo Ma, and Benoit Pasquier for these explanations&#41;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Arithmetic Sums &amp; Series</em>. <a href="https://jacobzelko.com/01052021044121-arithmetic-series">https://jacobzelko.com/01052021044121-arithmetic-series</a>. January 4 2021.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 04 Jan 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  All-Payer Claims Database  ]]>
  </title>
  <link> https://jacobzelko.com/01022021031334-all-payer-claims/index.html </link>
  <guid> https://jacobzelko.com/01022021031334-all-payer-claims/index.html </guid>
  <description>
    <![CDATA[  An overview on what all payer claims databases are  ]]>
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    <![CDATA[  
<h1>All-Payer Claims Database</h1>
<p><strong>Date:</strong> January 1 2021</p>
<p><strong>Summary:</strong> An overview on what all payer claims databases are</p>
<p><strong>Keywords:</strong> ##zettel #apcd #claims #database  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Overview</li><li>Advantages of APCDs over other federal health datasets</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="overview">Overview</h3>
<p>The goal of APCDs is to improve affordability of healthcare, its efficiency, and cost transparency. &#91;1&#93;</p>
<p>All-payer claims databases: State databases which contain the following information on private and public payers:</p>
<ul>
<li><p>Medical claims</p>
</li>
<li><p>Pharmacy claims</p>
</li>
<li><p>Dental claims</p>
</li>
<li><p>Eligibility and provider files</p>
</li>
</ul>
<p>Insurers are usually mandated by the state to provide APCD data to States.</p>
<h3 id="advantages_of_apcds_over_other_federal_health_datasets">Advantages of APCDs over other federal health datasets</h3>
<p>APCDs contain private insurance. This is not common for other datasets.</p>
<p>APCDs contain data from most or all insurance companies in a State. Other datasets do not have them.</p>
<p>APCDs include info on care for patients across care sites rather than only from discharge data systems. APCDs include large sample sizes, geographic representation, and capture of longitudinal information on a wide range of individual patients.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>All-Payer Claims Database</em>. <a href="https://jacobzelko.com/01022021031334-all-payer-claims">https://jacobzelko.com/01022021031334-all-payer-claims</a>. January 1 2021.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; Agency for Healthcare Research and Quality, “All-Payer Claims Databases,” Feb. 2018. https://www.ahrq.gov/data/apcd/index.html</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 01 Jan 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Anticipatory Biasing of Visuospatial Attention Indexed by Retinotopically Specific α-Bank Electroencephalography Increases over Occipital Cortex  ]]>
  </title>
  <link> https://jacobzelko.com/01022021030923-retinotopically-alpha-band/index.html </link>
  <guid> https://jacobzelko.com/01022021030923-retinotopically-alpha-band/index.html </guid>
  <description>
    <![CDATA[  Quick review of this paper to understand how covert attention works and how the study was used to assess this  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Anticipatory Biasing of Visuospatial Attention Indexed by Retinotopically Specific α-Bank Electroencephalography Increases over Occipital Cortex</h1>
<p><strong>Date:</strong> January 1 2021</p>
<p><strong>Summary:</strong> Quick review of this paper to understand how covert attention works and how the study was used to assess this</p>
<p><strong>Keywords:</strong> ##bibliography #attention #erp #archive</p>
<h1>Bibliography</h1>
<p>M. S. Worden, J. J. Foxe, N. Wang, and G. V. Simpson, &quot;Anticipatory Biasing of Visuospatial Attention Indexed by Retinotopically Specific α-Bank Electroencephalography Increases over Occipital Cortex,&quot; J. Neurosci., vol. 20, no. 6, pp. RC63–RC63, Mar. 2000, doi: 10.1523/JNEUROSCI.20-06-j0002.2000.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Materials &amp; Methods</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="materials_methods">Materials &amp; Methods</h3>
<p>Ten right-handed subjects, five male and five female, participated and gave informed consent. Their mean age was 27.1 years with a standard deviation of 6.7 years.</p>
<p><strong>Covert attention:</strong> how one can intentionally focus on locations in visual space where stimuli are expected without eye movement.Results in better stimuli processing occurring at the locus of attention while attenuating attention given elsewhere. &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Anticipatory Biasing of Visuospatial Attention Indexed by Retinotopically Specific α-Bank Electroencephalography Increases over Occipital Cortex</em>. <a href="https://jacobzelko.com/01022021030923-retinotopically-alpha-band">https://jacobzelko.com/01022021030923-retinotopically-alpha-band</a>. January 1 2021.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; M. I. Posner, C. R. Snyder, and B. J. Davidson, “Attention and the detection of signals.” J. Exp. Psychol. Gen., vol. 109, no. 2, p. 160, 1980.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 01 Jan 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Peripheral Nervous System  ]]>
  </title>
  <link> https://jacobzelko.com/01022021030507-peripheral-nervous-system/index.html </link>
  <guid> https://jacobzelko.com/01022021030507-peripheral-nervous-system/index.html </guid>
  <description>
    <![CDATA[  Notes on the peripheral nervous system  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Peripheral Nervous System</h1>
<p><strong>Date:</strong> January 1 2021</p>
<p><strong>Summary:</strong> Notes on the peripheral nervous system</p>
<p><strong>Keywords:</strong> #zettel #pns #nervous #system #brain #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Peripheral nervous system: relays information between body and brain via nerve impulses. &#91;1&#93; It has two divisions:</p>
<ol>
<li><p>Afferent division - information for the brain</p>
</li>
<li><p>Efferent division - messaging from the brain</p>
</li>
</ol>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Peripheral Nervous System</em>. <a href="https://jacobzelko.com/01022021030507-peripheral-nervous-system">https://jacobzelko.com/01022021030507-peripheral-nervous-system</a>. January 1 2021.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; R. Carter, S. Aldridge, M. Page, and S. Parker, The Human Brain Book. DK Publishing, 2019.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 01 Jan 2021 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  From Single-Trial EEG To Brain Area Dynamics  ]]>
  </title>
  <link> https://jacobzelko.com/12312020235220-single-trial-eeg/index.html </link>
  <guid> https://jacobzelko.com/12312020235220-single-trial-eeg/index.html </guid>
  <description>
    <![CDATA[  Modeling brain EEG using EEGLAB on a Go/Nogo Dataset to model brain activity  ]]>
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    <![CDATA[  
<h1>From Single-Trial EEG To Brain Area Dynamics</h1>
<p><strong>Date:</strong> December 31 2020</p>
<p><strong>Summary:</strong> Modeling brain EEG using EEGLAB on a Go/Nogo Dataset to model brain activity</p>
<p><strong>Keywords:</strong> ##bibliography #eeg #brain #data #ica #archive</p>
<h1>Bibliography</h1>
<p>A. Delorme, S. Makeig, M. Fabre-Thorpe, and T. Sejnowski, &quot;From single-trial EEG to brain area dynamics,&quot; Neurocomputing, vol. 44–46, pp. 1057–1064, Jun. 2002, doi: 10.1016/S0925-2312&#40;02&#41;00415-0.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Materials and Methods</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="materials_and_methods">Materials and Methods</h3>
<p>EEG data from rapid go/nogo visual categorization via natural photographs &#91;1&#93; Though the task involved complicated visual processing, averaged EEG epochs for target and non-target stimuli differed greatly as early as 150 ms after stimulus onset. It appeared to involve automated processing in the visual system.&#91;2&#93; <em>QUESTION: What is a go/nogo visual categorization task?</em></p>
<p><strong>EEG inverse problem:</strong> reconstructing intracranial brain sources from collected signals.Disparate EEG processes generally overlap in time and space. They become intertwined in scalp electrode recordings. &#91;3&#93;</p>
<p>Subjects were presented pictures for 20 ms at random intervals between 1.8–2.2s. Half of the pictures were animals. Subjects released a held button when an animal was observed. Subject accuracy was 94&#37; for correct responses. Median reaction time was 440 ms</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>From Single-Trial EEG To Brain Area Dynamics</em>. <a href="https://jacobzelko.com/12312020235220-single-trial-eeg">https://jacobzelko.com/12312020235220-single-trial-eeg</a>. December 31 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; M. Fabre-Thorpe, A. Delorme, C. Marlot, and S. Thorpe, “A limit to the speed of processing in ultra-rapid visual categorization of novel natural scenes,” J. Cogn. Neurosci., vol. 13, no. 2, pp. 171–180, 2001.</p>
<p>&#91;2&#93; S. J. Thorpe and M. Fabre-Thorpe, “Seeking categories in the brain,” Science, vol. 291, no. 5502, pp. 260–263, 2001.</p>
<p>&#91;3&#93; S. Thorpe, D. Fize, and C. Marlot, “Speed of processing in the human visual system,” nature, vol. 381, no. 6582, pp. 520–522, 1996.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 31 Dec 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  Flow  ]]>
  </title>
  <link> https://jacobzelko.com/12302020172825-flow/index.html </link>
  <guid> https://jacobzelko.com/12302020172825-flow/index.html </guid>
  <description>
    <![CDATA[  What is the concept of flow and being in a flow state  ]]>
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<h1>Flow</h1>
<p><strong>Date:</strong> December 30 2020</p>
<p><strong>Summary:</strong> What is the concept of flow and being in a flow state</p>
<p><strong>Keywords:</strong> ##zettel #learning #flow #psychology #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p><strong>Flow</strong>: The state of mind where one stops being mentally interrupted and becomes completely absorbed in the task at hand; the enjoyable state between boredom and frustration.</p>
<p><a href="https://jacobzelko.com/07082020163004-ultralearning">Idea attributed to psychologist Mihály Csíkszentmihályi</a></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Flow</em>. <a href="https://jacobzelko.com/12302020172825-flow">https://jacobzelko.com/12302020172825-flow</a>. December 30 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Wed, 30 Dec 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Positron Emission Tomography &#40;PET&#41;  ]]>
  </title>
  <link> https://jacobzelko.com/12282020161408-positron-emission-tomography/index.html </link>
  <guid> https://jacobzelko.com/12282020161408-positron-emission-tomography/index.html </guid>
  <description>
    <![CDATA[  What is Positron Emission Tomography &#40;PET&#41; scans  ]]>
  </description>  
  
  <content:encoded>
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<h1>Positron Emission Tomography &#40;PET&#41;</h1>
<p><strong>Date:</strong> December 28 2020</p>
<p><strong>Summary:</strong> What is Positron Emission Tomography &#40;PET&#41; scans</p>
<p><strong>Keywords:</strong> ##zettel #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Positron Emission Tomography &#40;PET&#41; scanners use radioactive marker signals in brain tissue to show activity. &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Positron Emission Tomography &#40;PET&#41;</em>. <a href="https://jacobzelko.com/12282020161408-positron-emission-tomography">https://jacobzelko.com/12282020161408-positron-emission-tomography</a>. December 28 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; R. Carter, S. Aldridge, M. Page, and S. Parker, The Human Brain Book. DK Publishing, 2019.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 28 Dec 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Income and Poverty in the COVID-19 Pandemic  ]]>
  </title>
  <link> https://jacobzelko.com/12282020152055-income-poverty-pandemic/index.html </link>
  <guid> https://jacobzelko.com/12282020152055-income-poverty-pandemic/index.html </guid>
  <description>
    <![CDATA[  Emerging insights into income and poverty during the COVID-19 pandemic  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Income and Poverty in the COVID-19 Pandemic</h1>
<p><strong>Date:</strong> December 28 2020</p>
<p><strong>Summary:</strong> Emerging insights into income and poverty during the COVID-19 pandemic</p>
<p><strong>Keywords:</strong> ##bibliography #pandemic #covid #economics #poverty #population #survey  #archive</p>
<h1>Bibliography</h1>
<p>J. Han, B. Meyer, and J. Sullivan, &quot;Income and Poverty in the COVID-19 Pandemic,&quot; National Bureau of Economic Research, Cambridge, MA, w27729, Aug. 2020. doi: 10.3386/w27729.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>General Insights</li><li>Methods of Research</li><li>Key Conclusions</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="general_insights">General Insights</h3>
<p>This study provides a template for understanding large economic shocks as they happen to counter the problem of data availability during major economic shocks. The start of the pandemic saw an unprecedented decline in economic activity in the US. The largest single month decline in US unemployment was 14 percent in April 2020.</p>
<p>The federal government&#39;s response totalled to nearly three trillion dollars spent to counter pandemic effects. Their response comprised of:</p>
<ul>
<li><p>Economic Impact Payments &#40;tax rebates&#41;</p>
</li>
<li><p>Small business loans</p>
</li>
<li><p>Massive increase in unemployment insurance as part of the CARES Act</p>
</li>
</ul>
<h3 id="methods_of_research">Methods of Research</h3>
<p>Basic Monthly Current Population Survey &#40;Monthly CPS&#41;, was used due to its quick release to understand the impact of macroeconomic conditions and government policies on US families&#39; incomes.</p>
<p>Family income from respondents in their first or fifth month in the survey were observed for a monthly sample ranging from 8,999 households and 20,822 individuals in February 2020 to 6,149 households and 14,383 individuals in April 2020.  Monthly CPS data from IPUMS-CPS &#91;1&#93; Generally, 90&#37; of earnings are reported in CPS, as opposed to ~60&#37; of unemployment insurance. &#91;2&#93;</p>
<h3 id="key_conclusions">Key Conclusions</h3>
<p>Without US government intervention, poverty would have risen by 2.7 percentage points between January and June.</p>
<p>The COVID Impact survey &#91;3&#93; finds an increase in food insecurity when compared to a different earlier survey while the Census Bureau&#39;s Household Pulse survey &#91;4&#93; finds high rates of inability to pay rent.  These sources suggest increased hardship after the pandemic. The increase in deprivation is not due to the overall income loss, but rather due to other disruptions of the pandemic, including possibly the unevenness of the income flows.</p>
<p>Disruptions such as:</p>
<ul>
<li><p>Closures of schools</p>
</li>
<li><p>Stores</p>
</li>
<li><p>Churches and other facilities</p>
</li>
<li><p>The uncertainty about future income streams</p>
</li>
<li><p>Concerns about the health of family and friends</p>
</li>
<li><p>Other disruptions</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Income and Poverty in the COVID-19 Pandemic</em>. <a href="https://jacobzelko.com/12282020152055-income-poverty-pandemic">https://jacobzelko.com/12282020152055-income-poverty-pandemic</a>. December 28 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; S. Flood, M. King, R. Rodgers, S. Ruggles, and J. Warren, “Integrated public use microdata series, current population survey: Version 7.0 &#91;dataset&#93;. Minneapolis, MN: Integrated public use microdata; 2020.”</p>
<p>&#91;2&#93; B. D. Meyer, W. K. Mok, and J. X. Sullivan, “Household surveys in crisis,” J. Econ. Perspect., vol. 29, no. 4, pp. 199–226, 2015.</p>
<p>&#91;3&#93; L. Bauer, “The COVID-19 Crisis Has Already Left Too Many Children Hungry in America,” May 06, 2020. https://www.hamiltonproject.org/blog/the<em>covid</em>19<em>crisis</em>has<em>already</em>left<em>too</em>many<em>children</em>hungry<em>in</em>america &#40;accessed Nov. 08, 2020&#41;.</p>
<p>&#91;4&#93; J. Fields et al., “Design and Operation of the 2020 Household Pulse Survey, 2020,” U.S. Census Bureau, 2020. Accessed: Nov. 08, 2020. &#91;Online&#93;. Available: https://www2.census.gov/programs-surveys/demo/technical-documentation/hhp/2020<em>HPS</em>Background.pdf</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 28 Dec 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Why everyone should care about &#39;Computable Phenotypes&#39;  ]]>
  </title>
  <link> https://jacobzelko.com/12292020005502-care-computable-phenotypes/index.html </link>
  <guid> https://jacobzelko.com/12292020005502-care-computable-phenotypes/index.html </guid>
  <description>
    <![CDATA[  A brief summary on why this paper was not very useful in discussing computable phenotypes.  ]]>
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<h1>Why everyone should care about &#39;Computable Phenotypes&#39;</h1>
<p><strong>Date:</strong> December 28 2020</p>
<p><strong>Summary:</strong> A brief summary on why this paper was not very useful in discussing computable phenotypes.</p>
<p><strong>Keywords:</strong> ##bibliography #computable #phenotypes #sepsis #lung #informatics  #archive</p>
<h1>Bibliography</h1>
<p>R. C. Tasker, &quot;Why everyone should care about ‘Computable Phenotypes,’&quot; Pediatr Crit Care Med, vol. 18, no. 5, pp. 489–490, May 2017, doi: 10.1097/PCC.0000000000001115.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>I do not believe the author is very familiar with the notion of mutltimodal analysis or standard data fusion methodologies. This was such a strange article that was more excitement and jubilation over the phenomenon of the possibility of computable phenotypes that I think the author was distracted from the message they were trying to convey. Though, they did talk about some applications regarding lung injury and sepsis, there was nothing really to suggest novelty in their assessment.</p>
<p>I reviewed this author&#39;s work and it appears the author has no formal training in informatics or analytics. So, I do not fault them for this article - however, to me, it read like something out of MIT Technology Review or a Science &amp; Technology Magazine. Not a professional scientific publication.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Why everyone should care about &#39;Computable Phenotypes&#39;</em>. <a href="https://jacobzelko.com/12292020005502-care-computable-phenotypes">https://jacobzelko.com/12292020005502-care-computable-phenotypes</a>. December 28 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 28 Dec 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Functional Magnetic Resonance Imaging  ]]>
  </title>
  <link> https://jacobzelko.com/12282020003750-functional-mri/index.html </link>
  <guid> https://jacobzelko.com/12282020003750-functional-mri/index.html </guid>
  <description>
    <![CDATA[  What is an fMRI or Functional Magnetic Resonance Imaging  ]]>
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<h1>Functional Magnetic Resonance Imaging</h1>
<p><strong>Date:</strong> December 28 2020</p>
<p><strong>Summary:</strong> What is an fMRI or Functional Magnetic Resonance Imaging</p>
<p><strong>Keywords:</strong> ##zettel #imaging #brain #fmri #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Functional Magnetic Resonance Imaging &#40;fMRI&#41; finds levels of electrical brain activity.Great at determining where brain activity is. &#91;1&#93; fMRI imaging was used to show activation patterns in spatially separated, though in-sync, <a href="https://jacobzelko.com/12282020003106-dynamic-functional-connectivity">brain region activity</a>. It has become clear there is a spatial and temporal periodicity in the brain that probably reflects some of the constant processes of the brain.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Functional Magnetic Resonance Imaging</em>. <a href="https://jacobzelko.com/12282020003750-functional-mri">https://jacobzelko.com/12282020003750-functional-mri</a>. December 28 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; R. Carter, S. Aldridge, M. Page, and S. Parker, The Human Brain Book. DK Publishing, 2019.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 28 Dec 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Magnetoencephalography &#40;MEG&#41;  ]]>
  </title>
  <link> https://jacobzelko.com/12282020161201-magnetoencephalography/index.html </link>
  <guid> https://jacobzelko.com/12282020161201-magnetoencephalography/index.html </guid>
  <description>
    <![CDATA[  What Magnetoencephalography is  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Magnetoencephalography &#40;MEG&#41;</h1>
<p><strong>Date:</strong> December 28 2020</p>
<p><strong>Summary:</strong> What Magnetoencephalography is</p>
<p><strong>Keywords:</strong> ##zettel #meg #brain #activity #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Magnetoencephalography &#40;MEG&#41; detects magnetic traces of brain activity to determine activity start time. Poor at locating where activity is. &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Magnetoencephalography &#40;MEG&#41;</em>. <a href="https://jacobzelko.com/12282020161201-magnetoencephalography">https://jacobzelko.com/12282020161201-magnetoencephalography</a>. December 28 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; R. Carter, S. Aldridge, M. Page, and S. Parker, The Human Brain Book. DK Publishing, 2019.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 28 Dec 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Electroencephalography  ]]>
  </title>
  <link> https://jacobzelko.com/12282020023207-electroencephalographs/index.html </link>
  <guid> https://jacobzelko.com/12282020023207-electroencephalographs/index.html </guid>
  <description>
    <![CDATA[  What is Electroencephalography?  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Electroencephalography</h1>
<p><strong>Date:</strong> December 28 2020</p>
<p><strong>Summary:</strong> What is Electroencephalography?</p>
<p><strong>Keywords:</strong> ##zettel #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Electroencephalographs show electrical activity from nerve cells firing. &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Electroencephalography</em>. <a href="https://jacobzelko.com/12282020023207-electroencephalographs">https://jacobzelko.com/12282020023207-electroencephalographs</a>. December 28 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; R. Carter, S. Aldridge, M. Page, and S. Parker, The Human Brain Book. DK Publishing, 2019.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 28 Dec 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Data Visualization in the Neurosciences: Overcoming the Curse of Dimensionality  ]]>
  </title>
  <link> https://jacobzelko.com/12282020001029-overcoming-dimensionality-neuroscience/index.html </link>
  <guid> https://jacobzelko.com/12282020001029-overcoming-dimensionality-neuroscience/index.html </guid>
  <description>
    <![CDATA[  How to approach the dilemma of visualizing complex data in neuroscience.  ]]>
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<h1>Data Visualization in the Neurosciences: Overcoming the Curse of Dimensionality</h1>
<p><strong>Date:</strong> December 27 2020</p>
<p><strong>Summary:</strong> How to approach the dilemma of visualizing complex data in neuroscience.</p>
<p><strong>Keywords:</strong> ##bibliography #neuroscience #dataviz #curse #dimensionality #visualization #data #science #archive</p>
<h1>Bibliography</h1>
<p>E. A. Allen, E. B. Erhardt, and V. D. Calhoun, &quot;Data Visualization in the Neurosciences: Overcoming the Curse of Dimensionality,&quot; Neuron, vol. 74, no. 4, pp. 603–608, May 2012, doi: 10.1016/j.neuron.2012.05.001.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Methods</li><li>Purpose</li><li>Ways to Reduce Complexity</li><li>Common Perceptions of Neuroscience Visualizations<ol><li>Bar Plots</li></ol></li><li>Key Takeaways</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="methods">Methods</h3>
<p>1,451 figures were examined from 288 neuroscience papers in 2010.</p>
<h3 id="purpose">Purpose</h3>
<p>They investigated current practices in data visualization in the realm of neuroscience and offered potential improvements to better reveal data than hide it.</p>
<p>Using work by Howard Wainer, Allen and co developed questions that were used to determine the effectiveness of particular visualizations.  These were the questions they came up with:</p>
<ol>
<li><p>Quantity of interest labeled?</p>
</li>
<li><p>Scale of the dependent variable indicated?</p>
</li>
<li><p>Measure of uncertainty displayed &#40;as needed&#41;?</p>
</li>
<li><p>Is the type of uncertainty &#40;e.g., standard error bars or confidence intervals&#41; defined in the figure or accompanying legend?</p>
</li>
</ol>
<blockquote>
<p><em>Interesting how they based it off of Wainer.  That paper on depicting error may be worth a read.</em></p>
</blockquote>
<h3 id="ways_to_reduce_complexity">Ways to Reduce Complexity</h3>
<p>Efficient method introduced to analyze rapidly changing functional patterns is by transforming fMRI <a href="https://jacobzelko.com/12282020020156-brain-biomarkers">BOLD</a> data to point processes. &#91;1&#93;, &#91;2&#93; Achieved by selecting peaks of the BOLD signal in each <a href="https://jacobzelko.com/11302020054820-voxel">voxel</a>. This reduction of data by &gt; 95&#37;, has been found very similar to inferences of functional connectivity from full signal analysis. &#91;3&#93;, &#91;4&#93;</p>
<p><em>QUESTION: What is a point process? Why is BOLD important?</em></p>
<h3 id="common_perceptions_of_neuroscience_visualizations">Common Perceptions of Neuroscience Visualizations</h3>
<p>Researchers may choose values for great visual appeal and easier interpretation. However, it reduces the analysis to a binary representation that suffers from the limitations of all-or-none hypothesis testing. &#91;5&#93;</p>
<p>Aesthetically pleasing brain image results are viewed more persuasive and credible than identical information presented in less appealing formats. &#91;6&#93;, &#91;7&#93;</p>
<p>Effective data visualization communicates that the data displayed does contain some uncertainty and that it quantifies that uncertainty as it pertains to conclusions one would make off the visualization. &#91;8&#93; - <em>Thoughts by Howard Wainer</em></p>
<h4 id="bar_plots">Bar Plots</h4>
<p>The usage of Bar Plots in neuroscience can certainly be beneficial but are not without their drawbacks:</p>
<p><strong>Pros of bar plots</strong></p>
<ul>
<li><p>Easy to generate</p>
</li>
<li><p>Straightforward to comprehend</p>
</li>
<li><p>Efficiently contrast a large number of conditions in a small space.</p>
</li>
<li><p>Great for binary data samples that reflect successes</p>
</li>
</ul>
<p><strong>Cons of bar plots</strong></p>
<ul>
<li><p>Commonly used in scenarios where distance from zero is not meaningful</p>
</li>
<li><p>Doesn&#39;t show distributional information</p>
</li>
</ul>
<h3 id="key_takeaways">Key Takeaways</h3>
<p>To better improve understanding of figures, integrating descriptions into the figure itself can:</p>
<ul>
<li><p>Discourages misinterpretation</p>
</li>
<li><p>Lead to quicker understanding of figure</p>
</li>
<li><p>Additional annotation should not detract from figure</p>
</li>
</ul>
<p>Dependent variables are more difficult to label when they represent abstract parameter estimates rather than directly measured quantities. Uncertainty is more challenging to render when data sets require error surfaces rather than error bars.  Displays should become increasingly informative regarding complex data in illustrating relationships that would not be well defined in tables or values alone.</p>
<p>Link to code in this paper: http://mialab.mrn.org/datavis</p>
<p><em>QUESTION: One thing that I realize and think a lot about from this paper is the question of: how easy is it to represent this sort of additional information that tells more the story of the neuroscientific data? Obviously, the authors have expertise with making their own tools.  But what about for those who do not have them?</em></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Data Visualization in the Neurosciences: Overcoming the Curse of Dimensionality</em>. <a href="https://jacobzelko.com/12282020001029-overcoming-dimensionality-neuroscience">https://jacobzelko.com/12282020001029-overcoming-dimensionality-neuroscience</a>. December 27 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; E. Tagliazucchi, M. Siniatchkin, H. Laufs, and D. R. Chialvo, “The voxel-wise functional connectome can be efficiently derived from co-activations in a sparse spatio-temporal point-process,” Front. Neurosci., vol. 10, p. 381, 2016.</p>
<p>&#91;2&#93; E. Tagliazucchi, R. Carhart-Harris, R. Leech, D. Nutt, and D. R. Chialvo, “Enhanced repertoire of brain dynamical states during the psychedelic experience,” Hum. Brain Mapp., vol. 35, no. 11, pp. 5442–5456, 2014.</p>
<p>&#91;3&#93; E. Tagliazucchi, P. Balenzuela, D. Fraiman, and D. R. Chialvo, “Criticality in large-scale brain fMRI dynamics unveiled by a novel point process analysis,” Front. Physiol., vol. 3, p. 15, 2012.</p>
<p>&#91;4&#93; E. Tagliazucchi, P. Balenzuela, D. Fraiman, P. Montoya, and D. R. Chialvo, “Spontaneous BOLD event triggered averages for estimating functional connectivity at resting state,” Neurosci. Lett., vol. 488, no. 2, pp. 158–163, 2011.</p>
<p>&#91;5&#93; L. L. Harlow, S. A. Mulaik, and J. H. Steiger, “What if there were no significance tests,” 1998.</p>
<p>&#91;6&#93; M. Keehner, L. Mayberry, and M. H. Fischer, “Different clues from different views: The role of image format in public perceptions of neuroimaging results,” Psychon. Bull. Rev., vol. 18, no. 2, pp. 422–428, 2011.</p>
<p>&#91;7&#93; D. P. McCabe and A. D. Castel, “Seeing is believing: The effect of brain images on judgments of scientific reasoning,” Cognition, vol. 107, no. 1, pp. 343–352, 2008.</p>
<p>&#91;8&#93; H. Wainer, “Depicting error,” Am. Stat., vol. 50, no. 2, pp. 101–111, 1996.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 27 Dec 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  What Is a Connectogram?  ]]>
  </title>
  <link> https://jacobzelko.com/12282020022324-connectogram/index.html </link>
  <guid> https://jacobzelko.com/12282020022324-connectogram/index.html </guid>
  <description>
    <![CDATA[  Connectograms visuzalize the complicated data found in  ]]>
  </description>  
  
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<h1>What Is a Connectogram?</h1>
<p><strong>Date:</strong> December 27 2020</p>
<p><strong>Summary:</strong> Connectograms visuzalize the complicated data found in</p>
<p><strong>Keywords:</strong> ##zettel #connectogram #brain #neuroscience #dataviz #visualizations #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Usage</li><li>Characteristics of a Connectogram</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="usage">Usage</h3>
<p>Connectograms based on diffusion MRI data employ graphs to demonstrate white matter connections and cortical characteristics. Connectograms can inform treatment of patients with neuroanatomical abnormalities. They can also be used for average cortical metrics and tractography data, across populations of any size.</p>
<h3 id="characteristics_of_a_connectogram">Characteristics of a Connectogram</h3>
<p>The outermost cortical surface ring:</p>
<ul>
<li><p>Circular</p>
</li>
<li><p>Left and right depicts respective hemispheres</p>
</li>
<li><p>Hemispheres comprise frontal lobe, insular cortex, limbic lobe, temporal lobe, parietal lobe, occipital lobe, subcortical structures, and cerebellum</p>
</li>
<li><p>Brain stem is represented between the two hemispheres at the bottom.</p>
</li>
</ul>
<p>Inside the cortical ring represented such as:</p>
<ul>
<li><p>Grey matter volume</p>
</li>
<li><p>Surface area</p>
</li>
<li><p>Cortical thickness</p>
</li>
<li><p>Curvature</p>
</li>
<li><p>Degree of connectivity</p>
</li>
</ul>
<p>Inside the circles:</p>
<ul>
<li><p>Lines connecting regions that are found to be structurally connected.</p>
</li>
</ul>
<p>The opacity of the lines represent number of connections. Fiber color gives fractional anisotropy. &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Is a Connectogram?</em>. <a href="https://jacobzelko.com/12282020022324-connectogram">https://jacobzelko.com/12282020022324-connectogram</a>. December 27 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; A. Irimia, M. C. Chambers, C. M. Torgerson, and J. D. Van Horn, “Circular representation of human cortical networks for subject and population-level connectomic visualization,” Neuroimage, vol. 60, no. 2, pp. 1340–1351, 2012.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 27 Dec 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Contact Tracing  ]]>
  </title>
  <link> https://jacobzelko.com/12282020023843-contact-tracing/index.html </link>
  <guid> https://jacobzelko.com/12282020023843-contact-tracing/index.html </guid>
  <description>
    <![CDATA[  Tracking contact between individuals of interest.  ]]>
  </description>  
  
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<h1>Contact Tracing</h1>
<p><strong>Date:</strong> December 27 2020</p>
<p><strong>Summary:</strong> Tracking contact between individuals of interest.</p>
<p><strong>Keywords:</strong> ##zettel #cdc #contact #tracing #intervention #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Contact tracing is the identification, monitoring, and support of individuals who have been exposed to an infected person and were possibly infected. &#91;1&#93;</p>
<p>Case investigation: identifying and investigating persons with confirmed and probable diagnoses. &#91;1&#93;</p>
<p><strong>Close contact:</strong> any individual within 6 feet of an infected person for at least 15 minutes starting from 48 hours before the person began feeling sick until the time the patient is isolated.</p>
<p>Steps for contact tracing:</p>
<ol>
<li><p>Case investigation: have patient recall everyone that they may have exposed themselves to while infectious.</p>
</li>
<li><p>Contact tracing: notify exposed individuals of their potential exposure, while preserving privacy</p>
</li>
<li><p>Contact support: Educate, inform, and support exposed persons about their risk, steps to protect others, and to watch for sickness illness.</p>
</li>
<li><p>Self-quarantine: Contacts are encouraged to stay home and maintain social distance from others until 14 days after their last exposure to the infected patient, in case they also become ill.</p>
</li>
</ol>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Contact Tracing</em>. <a href="https://jacobzelko.com/12282020023843-contact-tracing">https://jacobzelko.com/12282020023843-contact-tracing</a>. December 27 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; Centers for Disease Control, “Contact Tracing - CDC’s Role and Approach.” Aug. 10, 2020.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 27 Dec 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Dynamic Functional Connectivity  ]]>
  </title>
  <link> https://jacobzelko.com/12282020003106-dynamic-functional-connectivity/index.html </link>
  <guid> https://jacobzelko.com/12282020003106-dynamic-functional-connectivity/index.html </guid>
  <description>
    <![CDATA[  The brain exhibiting changes to functional activity over time.  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Dynamic Functional Connectivity</h1>
<p><strong>Date:</strong> December 27 2020</p>
<p><strong>Summary:</strong> The brain exhibiting changes to functional activity over time.</p>
<p><strong>Keywords:</strong> ##zettel #brain #dynamic #functional #connectivity #time #dfc #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Dynamic functional connectivity refers to functional connectivity changing over a short time.  The primary tool for analyzing DFC is <a href="https://jacobzelko.com/12282020003750-functional-mri">fMRI</a>. &#91;1&#93;</p>
<p>DFC is related to a variety of different neurological disorders, and has been suggested to be a more accurate representation of functional brain networks.</p>
<p>Functional networks of the brain fluctuate on the scale of seconds to minutes. The changes are generally movements from one short term state to another, rather than continuous shifts. &#91;2&#93;</p>
<p>There exist a few different types of stability in the kinds of brain analysis. &#91;3&#93; Here are a few with there associated descriptions:</p>
<ul>
<li><p>Dynamic functional activity: shown a distinct hierarchical organization of the networks of the brain.</p>
</li>
<li><p>Bilaterally symmetric regions: most stable form of connectivity in the brain</p>
</li>
<li><p>Direct anatomical connection: similar to bilaterally symmetric regions.</p>
</li>
<li><p>Steady state functional connectivity: have less temporal stability than anatomical connections.</p>
</li>
</ul>
<p><a href="https://jacobzelko.com/11302020054836-sliding-window-analysis">Sliding window analysis</a> is most common for functional connectivity and was first introduced in 2009. &#91;4&#93; Sliding window analysis is performed on DFC data by conducting analysis on a set number of scans in an fMRI session. The number of scans is the length of the sliding window.  The defined window is then moved a certain number of scans forward in time and additional analysis is performed.  The movement of the window is usually referenced in terms of the degree of overlap between adjacent windows. Data from sliding window analysis generally must be compared between two different groups to prove accuracy.</p>
<p>THOUGHT: This is very similar to analysis with <a href="https://jacobzelko.com/03272020064312-exponential-smoothing">exponential smoothing</a> or <a href="https://jacobzelko.com/04252020024813-median-filtering">&quot;salt-and-pepper&quot; filtering</a> and reminiscent of convolution filtering.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Dynamic Functional Connectivity</em>. <a href="https://jacobzelko.com/12282020003106-dynamic-functional-connectivity">https://jacobzelko.com/12282020003106-dynamic-functional-connectivity</a>. December 27 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; Wikipedia contributors, “Dynamic Functional Connectivity — Wikipedia, The Free Encyclopedia,” 2020.</p>
<p>&#91;2&#93; R. M. Hutchison et al., “Dynamic functional connectivity: Promise, issues, and interpretations,” Neuroimage, vol. 80, pp. 360–378, 2013.</p>
<p>&#91;3&#93; W. Majeed, M. Magnuson, and S. D. Keilholz, “Spatiotemporal dynamics of low frequency fluctuations in BOLD fMRI of the rat,” J. Magn. Reson. Imaging Off. J. Int. Soc. Magn. Reson. Med., vol. 30, no. 2, pp. 384–393, 2009.</p>
<p>&#91;4&#93; U. Sakoglu and V. Calhoun, “Dynamic windowing reveals task-modulation of functional connectivity in schizophrenia patients vs healthy controls,” in Proc. Intl. Soc. Mag. Reson. Med, 2009, vol. 17, p. 3675.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 27 Dec 2020 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Functional Connectivity  ]]>
  </title>
  <link> https://jacobzelko.com/12282020004327-functional-connectivity/index.html </link>
  <guid> https://jacobzelko.com/12282020004327-functional-connectivity/index.html </guid>
  <description>
    <![CDATA[  Brain activity which occurs between spatially separated  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Functional Connectivity</h1>
<p><strong>Date:</strong> December 27 2020</p>
<p><strong>Summary:</strong> Brain activity which occurs between spatially separated</p>
<p><strong>Keywords:</strong> ##zettel #brain #activity #functional #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Functional connectivity refers to the functionally integrated relationship between spatially separated brain regions.  Functional connectivity is related to similar patterns of activation in different brain regions regardless of the apparent physical connectedness of the regions. &#91;1&#93;, &#91;2&#93;</p>
<p>Functional connectivity is usually measured during resting state <a href="https://jacobzelko.com/12282020003750-functional-mri">fMRI</a>. &#91;3&#93; This is predicated on the assumption that functional connections in the brain remain constant in a short time over a task or period of data collection. Generally examined items based on temporal similarities during analysis of the brain are:</p>
<ul>
<li><p>Correlation</p>
</li>
<li><p>Coherence</p>
</li>
<li><p>Spatial grouping</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Functional Connectivity</em>. <a href="https://jacobzelko.com/12282020004327-functional-connectivity">https://jacobzelko.com/12282020004327-functional-connectivity</a>. December 27 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; B. Biswal, F. Z. Yetkin, V. M. Haughton, and J. S. Hyde, “Functional connectivity in the motor cortex of resting human brain using echo-planar MRI,” Magn Reson Med, vol. 34, no. 4, pp. 537–541, Oct. 1995, doi: 10.1002/mrm.1910340409.</p>
<p>&#91;2&#93; K. J. Friston, “Functional and effective connectivity: A review,” Brain Connect., vol. 1, no. 1, pp. 13–36, 2011.</p>
<p>&#91;3&#93; R. M. Hutchison et al., “Dynamic functional connectivity: Promise, issues, and interpretations,” Neuroimage, vol. 80, pp. 360–378, 2013.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 27 Dec 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Selection Sort  ]]>
  </title>
  <link> https://jacobzelko.com/12212020214012-selection-sort/index.html </link>
  <guid> https://jacobzelko.com/12212020214012-selection-sort/index.html </guid>
  <description>
    <![CDATA[  Selection sort utilizes repeated usages of linear searches to  ]]>
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<h1>Selection Sort</h1>
<p><strong>Date:</strong> December 21 2020</p>
<p><strong>Summary:</strong> Selection sort utilizes repeated usages of linear searches to</p>
<p><strong>Keywords:</strong> ##zettel #selection #sort #algorithms #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Technical Definition</li><li>Discussion</li><li>Plain-Word Explanation</li><li>Code Implementation</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion</li></ol></div>
<h3 id="technical_definition">Technical Definition</h3>
<h3 id="discussion">Discussion</h3>
<h3 id="plain-word_explanation">Plain-Word Explanation</h3>
<p>Imagine that I, your humble sorter, is seated in front of 10 cards each with a value between the numbers of 1 - 10. Every single card is face up and is in a line with each card next to the other. I know you want the cards sorted, so what I do, since I am somewhat slow, is look through every single card in that line and find the smallest valued card.</p>
<p>I take the smallest card and start a new row of cards which are sorted from the smallest valued card to the largest valued card. I then repeat this process and take the next smallest value and put it next to the smallest card I found. I continue this back and forth process until all the cards are sorted. That is tiring, but this method of sorting is called selection sort&#33;</p>
<h3 id="code_implementation">Code Implementation</h3>
<pre><code class="language-julia">function selectionsort&#40;arr&#41;
    sorted &#61; &#91;&#93; # 
    while length&#40;arr&#41; &gt; 0
        val &#61; arr&#91;1&#93;
        ind &#61; 1
        for curr &#61; 2:length&#40;arr&#41;
            if arr&#91;curr&#93; &lt; val
                val &#61; arr&#91;curr&#93;
                ind &#61; curr
            end
        end
        push&#33;&#40;sorted, val&#41;
        deleteat&#33;&#40;arr, ind&#41;
    end
    return sorted
end</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Selection Sort</em>. <a href="https://jacobzelko.com/12212020214012-selection-sort">https://jacobzelko.com/12212020214012-selection-sort</a>. December 21 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion__2">Discussion</h2>
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  <pubDate>Mon, 21 Dec 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  Sorting Algorithms  ]]>
  </title>
  <link> https://jacobzelko.com/12192020180920-sorting-algorithms/index.html </link>
  <guid> https://jacobzelko.com/12192020180920-sorting-algorithms/index.html </guid>
  <description>
    <![CDATA[  Sorting algorithms take in an array of unsorted data as input  ]]>
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    <![CDATA[  
<h1>Sorting Algorithms</h1>
<p><strong>Date:</strong> December 19 2020</p>
<p><strong>Summary:</strong> Sorting algorithms take in an array of unsorted data as input</p>
<p><strong>Keywords:</strong> ##summary #sorting #algorithms #recursion #computer #science #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Common Sorting Algorithms</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="common_sorting_algorithms">Common Sorting Algorithms</h3>
<ul>
<li><p><a href="https://jacobzelko.com/12192020184137-insertion-sort">Insertion Sort</a> -</p>
</li>
<li><p><a href="https://jacobzelko.com/12192020184204-merge-sort">Merge Sort</a> -</p>
</li>
<li><p><a href="https://jacobzelko.com/12212020214025-bubble-sort">Bubble Sort</a> -</p>
</li>
<li><p><a href="https://jacobzelko.com/12212020214012-selection-sort">Selection Sort</a> - Selection sort utilizes repeated usages of linear searches to sort an input.</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Sorting Algorithms</em>. <a href="https://jacobzelko.com/12192020180920-sorting-algorithms">https://jacobzelko.com/12192020180920-sorting-algorithms</a>. December 19 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 19 Dec 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Sliding Window Analysis  ]]>
  </title>
  <link> https://jacobzelko.com/11302020054836-sliding-window-analysis/index.html </link>
  <guid> https://jacobzelko.com/11302020054836-sliding-window-analysis/index.html </guid>
  <description>
    <![CDATA[  How sliding window analysis works and is implemented  ]]>
  </description>  
  
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<h1>Sliding Window Analysis</h1>
<p><strong>Date:</strong> November 30 2020</p>
<p><strong>Summary:</strong> How sliding window analysis works and is implemented</p>
<p><strong>Keywords:</strong> ##zettel #window #analysis #signal #processing #computerscience #algorithm #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p><img src="11302020061716.png" alt="" /></p>
<p>The way sliding window analysis works is to analyze each voxel across an axis and project it to a final array that does not contain the axis upon which analysis took place. In this picture, each <a href="https://jacobzelko.com/11302020054820-voxel">voxel</a> across the z-axis at location <code>&#91;1, 1&#93;</code>, where <code>&#91;1, 1&#93;</code> is a <code>&#40;x, y&#41;</code> coordinate pair, is being summed up and divided by the number of values present to produce a simple mean. The voxels being summed are highlighted pink.</p>
<p><img src="11302020062728.png" alt="" /></p>
<p>As shown in the above picture, the algorithm then continues this process until the array determined by the <code>x</code> and <code>y</code> dimensions of the cube, in this case a <code>&#40;3, 3&#41;</code> array, is filled.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Sliding Window Analysis</em>. <a href="https://jacobzelko.com/11302020054836-sliding-window-analysis">https://jacobzelko.com/11302020054836-sliding-window-analysis</a>. November 30 2020.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 30 Nov 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  What are Voxels  ]]>
  </title>
  <link> https://jacobzelko.com/11302020054820-voxel/index.html </link>
  <guid> https://jacobzelko.com/11302020054820-voxel/index.html </guid>
  <description>
    <![CDATA[  A summary on what voxels are and their applications  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>What are Voxels</h1>
<p><strong>Date:</strong> November 30 2020</p>
<p><strong>Summary:</strong> A summary on what voxels are and their applications</p>
<p><strong>Keywords:</strong> ##summary #voxel #graphics #data #computer #science #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Voxels are 3D volumetric constructs that take as parameters three axes which serve as indices for the value stored in the 3D block at the indexed location.</p>
<p><img src="11302020060802.png" alt="" /></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What are Voxels</em>. <a href="https://jacobzelko.com/11302020054820-voxel">https://jacobzelko.com/11302020054820-voxel</a>. November 30 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 30 Nov 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Stereographic Projection  ]]>
  </title>
  <link> https://jacobzelko.com/11132020052431-stereographic-projection/index.html </link>
  <guid> https://jacobzelko.com/11132020052431-stereographic-projection/index.html </guid>
  <description>
    <![CDATA[  A small note on the stereographic projection method  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Stereographic Projection</h1>
<p><strong>Date:</strong> November 12 2020</p>
<p><strong>Summary:</strong> A small note on the stereographic projection method</p>
<p><strong>Keywords:</strong> ##zettel #stereographic #projection #linearalgebra #math #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Note Linked From:</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="note_linked_from">Note Linked From:</h3>
<ul>
<li><p><a href="https://jacobzelko.com/10152020223819-neuriviz-project">NeuriViz Project</a> - An on-going experiment into developing performant neuroscientific visualizations via Julia.</p>
</li>
<li><p><a href="https://jacobzelko.com/10182020030856-neuriviz-research-notes">NeuriViz Project Notes</a></p>
</li>
</ul>
<hr />
<p>Stereographic projection is used to project a sphere to a 2D plane.  The algorithm in Cartesian coordinates looks like this:</p>
\[
[1] \ (X, Y) = (\frac{x}{1 - z}, \frac{y}{1 - z})
\]
\[
[2] \ (X, Y, Z)=\left(\frac{2 X}{1+X^{2}+Y^{2}}, \frac{2 Y}{1+X^{2}+Y^{2}}, \frac{-1+X^{2}+Y^{2}}{1+X^{2}+Y^{2}}\right)
\]
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Stereographic Projection</em>. <a href="https://jacobzelko.com/11132020052431-stereographic-projection">https://jacobzelko.com/11132020052431-stereographic-projection</a>. November 12 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 12 Nov 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Brain Imaging Data Structure &#40;BIDS&#41;  ]]>
  </title>
  <link> https://jacobzelko.com/11052020174635-brain-imaging-structure/index.html </link>
  <guid> https://jacobzelko.com/11052020174635-brain-imaging-structure/index.html </guid>
  <description>
    <![CDATA[  An overview of the BIDS style for Brain Imaging Data.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Brain Imaging Data Structure &#40;BIDS&#41;</h1>
<p><strong>Date:</strong> November 5 2020</p>
<p><strong>Summary:</strong> An overview of the BIDS style for Brain Imaging Data.</p>
<p><strong>Keywords:</strong> ##zettel #bids #neuroscience #brain #imaging #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Purpose</li><li>Specific data specifications:</li><li>Topics</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="purpose">Purpose</h3>
<p>A core problem regarding reproducible neuroscience is that there has been no widely adopted standard for describing data from an imaging experiment. This renders sharing and reusing data difficult.&#91;1&#93; Furthermore, it complicates automation and quality assurance.</p>
<p>The BIDS format was inspired by the work done by the <a href="https://openneuro.org/">OpenNeuro</a> community to easily share and structure their data regarding pertaining to neuroscientific research. It enables development of automated tools to operate on datasets. &#91;1&#93; Common standards minimize curation&#33; Helps those not involved to effectively understand the data.</p>
<h3 id="specific_data_specifications">Specific data specifications:</h3>
<ul>
<li><p>Raw data derivatives should be separate from source data.</p>
</li>
<li><p>The NIfTI image file format was selected as it is the most ubiquitous across neuroimaging software.BIDS requires users to provide additional meta information in a sidecar JSON file.</p>
</li>
<li><p>Metadata is generally stored as an array in tab-delimited values.</p>
</li>
<li><p>JSON files are used for storing key/value pairs.</p>
</li>
</ul>
<p>The key names follow a fixed dictionary in the specification.</p>
<h3 id="topics">Topics</h3>
<p>Neuroimaging: brain imaging to gain quantitative brain data. &#91;1&#93;</p>
<p>Error reduction: errors attributed to misunderstanding data.</p>
<p>Provenance: information regarding actions or those involved in producing an object. It can be used to form assessments about its valour.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Brain Imaging Data Structure &#40;BIDS&#41;</em>. <a href="https://jacobzelko.com/11052020174635-brain-imaging-structure">https://jacobzelko.com/11052020174635-brain-imaging-structure</a>. November 5 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; K. J. Gorgolewski et al., “The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments,” Sci Data, vol. 3, no. 1, p. 160044, Dec. 2016, doi: 10.1038/sdata.2016.44.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 05 Nov 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Apache Arrow  ]]>
  </title>
  <link> https://jacobzelko.com/10262020041544-apache-arrow/index.html </link>
  <guid> https://jacobzelko.com/10262020041544-apache-arrow/index.html </guid>
  <description>
    <![CDATA[  Language-agnostic in-memory columnar format for analytical query engines and data frames  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Apache Arrow</h1>
<p><strong>Date:</strong> October 26 2020</p>
<p><strong>Summary:</strong> Language-agnostic in-memory columnar format for analytical query engines and data frames</p>
<p><strong>Keywords:</strong> ##zettel #apache #arrow #dataframe #data #storage #format  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<ul>
<li><p>Launched in 2016</p>
</li>
<li><p>Purpose: Language-independent open standards and libraries to accelerate and simplify in-memory computing</p>
</li>
<li><p>Columnar Memory Format</p>
<ul>
<li><p>Ideal for Columnar Storage &#40;small size&#41;</p>
</li>
<li><p>Supports flat and nested schemas</p>
</li>
<li><p>Organized for cache-efficient access on CPUs and GPUs and takes advantage of parallel processing</p>
</li>
<li><p>Optimized for scan and random access</p>
</li>
</ul>
</li>
<li><p>Binary Messaging Protocol</p>
<ul>
<li><p>Record batch is a part of a table</p>
</li>
<li><p>Can be streamed</p>
</li>
</ul>
</li>
<li><p>Encapsulated Protocol Messages &#40;IPC&#41;</p>
<ul>
<li><p>Specifies the memory location of each column in the table</p>
</li>
</ul>
</li>
</ul>
<p>&#91;1&#93;</p>
<p>The arrow format allows for larger-than-memory datasets. When writing a dataset to arrow format, the data and metadata is laid in a descriptive layout. The data is written in pre-determined, binary formats by supported type. When reading, Arrow memory maps data from arrow memory. This means the OS gives access to memory which is swapped into RAM upon requests. &#40;Jacob Quinn – correspondence on Apache Arrow mailing list&#41;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Apache Arrow</em>. <a href="https://jacobzelko.com/10262020041544-apache-arrow">https://jacobzelko.com/10262020041544-apache-arrow</a>. October 26 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; Apache Arrow and the Future of Data Frames, &#40;2020&#41;.Available: https://www.youtube.com/watch?v&#61;fyj4FyH3XdU&amp;t&#61;281s</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 26 Oct 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  DrWatson.jl  ]]>
  </title>
  <link> https://jacobzelko.com/10262020033701-drwatson-pkg/index.html </link>
  <guid> https://jacobzelko.com/10262020033701-drwatson-pkg/index.html </guid>
  <description>
    <![CDATA[  DrWatson is a strong tool for encouraging reproducible science and enforces good project management.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>DrWatson.jl</h1>
<p><strong>Date:</strong> October 10 2020</p>
<p><strong>Summary:</strong> DrWatson is a strong tool for encouraging reproducible science and enforces good project management.</p>
<p><strong>Keywords:</strong> ##zettel #julialang #project #management #reproducible #science #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Today, I spent some time learning about DrWatson.jl. I have always wanted to use the project and now I finally have a reason to work with it&#33; I enjoyed the default layout provided by DrWatson - here are some general thoughts on the matter.</p>
<p>The project directory provided by DrWatson is automatically setup. The defaults are quite nice and I did not change anything except for ignoring the data files:</p>
<pre><code class="language-julia">│projectdir          &lt;- Project&#39;s main folder. It is initialized as a Git
│                       repository with a reasonable .gitignore file.
│
├── _research        &lt;- WIP scripts, code, notes, comments,
│   |                   to-dos and anything in an alpha state.
│   └── tmp          &lt;- Temporary data folder.
│
├── data             &lt;- **Immutable and add-only&#33;**
│   ├── sims         &lt;- Data resulting directly from simulations.
│   ├── exp_pro      &lt;- Data from processing experiments.
│   └── exp_raw      &lt;- Raw experimental data.
│
├── plots            &lt;- Self-explanatory.
├── notebooks        &lt;- Jupyter, Weave or any other mixed media notebooks.
│
├── papers           &lt;- Scientific papers resulting from the project.
│
├── scripts          &lt;- Various scripts, e.g. simulations, plotting, analysis,
│   │                   The scripts use the &#96;src&#96; folder for their base code.
│   └── intro.jl     &lt;- Simple file that uses DrWatson and uses its greeting.
│
├── src              &lt;- Source code for use in this project. Contains functions,
│                       structures and modules that are used throughout
│                       the project and in multiple scripts.
│
├── README.md        &lt;- Optional top-level README for anyone using this project.
├── .gitignore       &lt;- by default ignores _research, data, plots, videos,
│                       notebooks and latex-compilation related files.
│
├── Manifest.toml    &lt;- Contains full list of exact package versions used currently.
└── Project.toml     &lt;- Main project file, allows activation and installation.
                        Includes DrWatson by default.</code></pre>
<p>I started DrWatson up in my Julia REPL and ran the following as I already had a git repo set-up and files in the repo:</p>
<pre><code class="language-julia">using DrWatson
initialize_project&#40;&quot;NeuriViz&quot;; authors &#61; &#91;&quot;Jacob Zelko&quot;, &quot;Zachary P Christensen&quot;&#93;, force &#61; false, git &#61; false, placeholder &#61; true&#41;</code></pre>
<p>It set up the structure I needed and was quite easy to use. DrWatson was created by George Datseris.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>DrWatson.jl</em>. <a href="https://jacobzelko.com/10262020033701-drwatson-pkg">https://jacobzelko.com/10262020033701-drwatson-pkg</a>. October 10 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 10 Oct 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Multiscale Entropy  ]]>
  </title>
  <link> https://jacobzelko.com/10082020005615-multiscale-entropy/index.html </link>
  <guid> https://jacobzelko.com/10082020005615-multiscale-entropy/index.html </guid>
  <description>
    <![CDATA[  Brief synopsis/explanation of what is Multiscale Entropy  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Multiscale Entropy</h1>
<p><strong>Date:</strong> October 7 2020</p>
<p><strong>Summary:</strong> Brief synopsis/explanation of what is Multiscale Entropy</p>
<p><strong>Keywords:</strong> ##zettel #statistics #entropy  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Notes from Giulia Da Poian&#39;s mini lecture:</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="notes_from_giulia_da_poians_mini_lecture">Notes from Giulia Da Poian&#39;s mini lecture:</h3>
<ul>
<li><p>The radius of similarity is technically 0.15&#40;standard deviation of the time series&#41;</p>
</li>
<li><p>Generally people choose the radius of similarity to be 0.15 in practice</p>
</li>
<li><p>The pattern usually chosen for MSE is 2 points</p>
</li>
</ul>
<p>Entropy Equation:</p>
\[
S = \frac{log(A)}{log(B)}
\]
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Multiscale Entropy</em>. <a href="https://jacobzelko.com/10082020005615-multiscale-entropy">https://jacobzelko.com/10082020005615-multiscale-entropy</a>. October 7 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Wed, 07 Oct 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Death of a Salesman  ]]>
  </title>
  <link> https://jacobzelko.com/12262020224653-death-salesman/index.html </link>
  <guid> https://jacobzelko.com/12262020224653-death-salesman/index.html </guid>
  <description>
    <![CDATA[  A wonderful but scathing critique of the American dream as told from the perspective of a low-income, and at times, lower-middle class, American family with the father eking out an existence as a traveling salesman.  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Death of a Salesman</h1>
<p><strong>Date:</strong> July 26 2020</p>
<p><strong>Summary:</strong> A wonderful but scathing critique of the American dream as told from the perspective of a low-income, and at times, lower-middle class, American family with the father eking out an existence as a traveling salesman.</p>
<p><strong>Keywords:</strong> ##bibliography #capitalism #classic #fiction #satisfaction ##book ##blog #archive</p>
<h1>Bibliography</h1>
<p>A. Miller, Death of a Salesman. Penguin Books, 1998.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>What is Satisfaction?</li><li>Shattering of Innocence</li><li>False Expectations</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="what_is_satisfaction">What is Satisfaction?</h3>
<blockquote>
<p>&quot;I&#39;m thirty-four years old, I oughta be makin&#39; my future.</p>
</blockquote>
<p>That&#39;s when I come running home.  And now, I get here, and I don&#39;t know what to do with myself.  &#91;After a pause&#93; I&#39;ve always made a point of not wasting my life, and everytime I come back here I know that all I&#39;ve done is to waste my life.&quot; </p>
<p><em>Biff talking to his mother about his life&#39;s relative miserable existence</em></p>
<p>His obsession for not wasting his life or waiting almost for his life to start is similar to my thoughts. Interesting. I think the big thing is here is the overinflated notion of being &quot;big&quot; or important.  As though that were the ultimate goal of any man.</p>
<blockquote>
<p>&quot;All I can do now is wait for the merchandise manager to die.</p>
</blockquote>
<p>And suppose I get to be merchandise manager?  He&#39;s a good friend of mine, and he just built a terrific estate on Long Island.  And he lived there about two months and sold it, and now he&#39;s building another one.  He can&#39;t enjoy it once it&#39;s finished.  And I know that&#39;s just what I would do.  I don&#39;t know what the hell I&#39;m workin&#39; for.  Sometimes I sit in my apartment—all alone.  And I think of the rent I&#39;m paying.  And it&#39;s crazy.  But then, it&#39;s what I always wanted.  My own apartment, a car, and plenty of women.  And still, goddammit, I&#39;m lonely.&quot;</p>
<p><em>Happy talking to his brother, Biff, about his own struggle and situation in life</em></p>
<p>This carries on the theme of the dissatisfaction with the attainment of being &quot;big&quot;. Happy got everything he could want but is still unhappy – contrasting this with Biff is that Biff is unhappy even though he did not get what he wanted.  These are two examples of being dissatisfied in uniquely different ways.</p>
<blockquote>
<p>Linda: &quot;&#91;to Willy ...&#93; Why must everybody conquer the world?&quot;</p>
</blockquote>
<p>It is a powerful insight into Linda&#39;s thinking.  To Linda, Willy already has the best things in the world. He just can&#39;t stop to realize it or rather, it is not enough for him to have a loving family. He needs to be big in the eyes of &quot;people&quot;.  This reminds me of my note on <a href="https://jacobzelko.com/07132020022756-media-timothy">&quot;False Expertise&quot;</a> where there, the problem is that being exposed enough to material gives you prestige. In this case, Willy thinks being acknowledged by people as a nice guy is enough to ensure endless success.</p>
<h3 id="shattering_of_innocence">Shattering of Innocence</h3>
<blockquote>
<p>Willy: &quot;Never mind&#33;  He&#39;s going to give you those points.  I&#39;ll see to it.&quot; Biff: &quot;He wouldn&#39;t listen to you.&quot;</p>
</blockquote>
<p><em>The crushing moment when Biff sees through his father and loses complete faith in him.</em></p>
<p>I find this moment in the story more tragic than Willy&#39;s eventual death. It is this moment which doomed Willy and his family for the rest of his life.  It&#39;s never explained why Willy had an affair but, perhaps, that is the point.  A person does not need a reason for slipping.  I find it interesting how Willy tries to keep up the front of being an exemplar amongst men. Though Biff later calls his father, &quot;a prince among men,&quot; I believe it was to keep up Willy&#39;s pretense. I wonder if Willy did confess this incident to his family, if things may have been different...</p>
<blockquote>
<p>Willy </p>
</blockquote>
<p>After all the highways, and the trains, and the appointments, and the years, you end up worth more dead than alive.&quot;</p>
<p>The moment in which Willy realizes his life is not moving towards any grand destiny and decides fully upon suicide. It&#39;s an interesting insight about the idea of providing incentives.</p>
<h3 id="false_expectations">False Expectations</h3>
<blockquote>
<p>Willy: &quot;Without a penny to &#91;my brother&#39;s name&#93;, &#91;...&#93; it&#39;s not what you do&#91;.&#93;  It&#39;s who you know and the smile on your face&#33;&quot;</p>
</blockquote>
<p>The crux of Willy&#39;s mentality on how life &quot;should be&quot; and how he expects life to work. Ultimately, this is proven false when he fails to get a job after pulling his contacts. In reality, nearly the exact opposite of this maxim is the truth.</p>
<blockquote>
<p>Charley: &quot;The only thing you got in this world is what you can sell.</p>
</blockquote>
<p>And the funny thing is that you&#39;re a salesman, and you don&#39;t know that.&quot;</p>
<p><em>Willy&#39;s neighbor Charley admonishing him on his frustration with the world not working they way Willy expects it to.</em></p>
<p>Ultimately, this searing criticism of Willy shows to him that he doesn&#39;t have any skills to offer outside of his perfunctory service as a salesman. He is a mediocre man who never tried to adapt and move with the times. And Willy refuses to believe that life passed him by in that way.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Death of a Salesman</em>. <a href="https://jacobzelko.com/12262020224653-death-salesman">https://jacobzelko.com/12262020224653-death-salesman</a>. July 26 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 26 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Famous Quotes  ]]>
  </title>
  <link> https://jacobzelko.com/07222020181007-famous-quotes/index.html </link>
  <guid> https://jacobzelko.com/07222020181007-famous-quotes/index.html </guid>
  <description>
    <![CDATA[  A collection of favorite quotes from books and people.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Famous Quotes</h1>
<p><strong>Date:</strong> July 22 2020</p>
<p><strong>Summary:</strong> A collection of favorite quotes from books and people.</p>
<p><strong>Keywords:</strong> #knowledge #quotes #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Quotes Regarding Knowledge</li><li>Quotes Regarding Books</li><li>Quotes Regarding Fame</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="quotes_regarding_knowledge">Quotes Regarding Knowledge</h3>
<blockquote>
<p>&quot;There are known knowns; there are things we know that we know. There are known unknowns; that is to say, there are things that we now know we don’t know. But there are also unknown unknowns — there are things we do not know we don’t know.&quot; - Secretary of State, Donald Rumsfeld</p>
</blockquote>
<blockquote>
<p>&quot;When you have eliminated the impossible, whatever remains, however improbable, must be the truth.&quot; - Sherlock Holmes, Sir Arthur Conan Doyle</p>
</blockquote>
<p>An inductive approach to knowledge that Sherlock Holmes takes to solve puzzles and problems.</p>
<h3 id="quotes_regarding_books">Quotes Regarding Books</h3>
<blockquote>
<p>&quot;Dorian Gray had been poisoned by a book&quot; - Oscar Wilde, <a href="https://jacobzelko.com/04202022021854-picture-dorian-gray">The Picture of Dorian Gray</a></p>
</blockquote>
<p>This quote gets at how the influence of a book can corrupt an individual or push someone further to corruption. In Gray&#39;s case, he was already corrupted but the book further pushed him beyond what evil he was already capable of pursuing.</p>
<h3 id="quotes_regarding_fame">Quotes Regarding Fame</h3>
<blockquote>
<p>&quot;For there is only one thing in the world worse than being talked about, and that is not being talked about.&quot; - Oscar Wilde, <a href="https://jacobzelko.com/04202022021854-picture-dorian-gray">The Picture of Dorian Gray</a></p>
</blockquote>
<p>When you attain fame, at least you are talked about – whether positively or negatively. But to not be talked about means no one even knows who you are.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Famous Quotes</em>. <a href="https://jacobzelko.com/07222020181007-famous-quotes">https://jacobzelko.com/07222020181007-famous-quotes</a>. July 22 2020.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Wed, 22 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Intellectual and Developmental Disability and COVID-19 Case-fatality Trends: TriNetX Analysis  ]]>
  </title>
  <link> https://jacobzelko.com/07192020022823-intellectual-trinetx-analysis/index.html </link>
  <guid> https://jacobzelko.com/07192020022823-intellectual-trinetx-analysis/index.html </guid>
  <description>
    <![CDATA[  Intellectual and developmental disability and association with COVID-19 fatalities  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Intellectual and Developmental Disability and COVID-19 Case-fatality Trends: TriNetX Analysis</h1>
<p><strong>Date:</strong> July 19 2020</p>
<p><strong>Summary:</strong> Intellectual and developmental disability and association with COVID-19 fatalities</p>
<p><strong>Keywords:</strong> ##bibliography #covid19 ##pandemic #idd #intellectual #disability #archive</p>
<h1>Bibliography</h1>
<p>M. A. Turk, S. D. Landes, M. K. Formica, and K. D. Goss, &quot;Intellectual and developmental disability and COVID-19 case-fatality trends: TriNetX analysis,&quot; Disability and Health Journal, p. 100942, May 2020, doi: 10.1016/j.dhjo.2020.100942.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Data Methods</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>The central hypotheses of this paper are:</p>
<ol>
<li><p>IDD persons have higher prevalence of conditions associated with higher COVID-19 morbidity and mortality outcomes</p>
</li>
<li><p>Case-fatality rate would be higher for COVID19 individuals with IDD than without IDD.</p>
</li>
</ol>
<h3 id="data_methods">Data Methods</h3>
<p>COVID-19 patients were defined as those with either a COVID-19 diagnosis code or a positive SARS-CoV-2 laboratory test result since January 20, 2020. Patients were categorized as those with and without diagnosed developmental disability, including intellectual disability &#40;F70-79&#41;, cerebral palsy &#40;G80&#41;, Down syndrome &#40;Q90&#41;, and other developmental disabilities &#40;F80-89, Q91-99&#41;.</p>
<p>Documentation was provided for comorbidities related to risk for severe outcomes with COVID-19 up to the date of the first COVID-19 documentation. Trends in number of cases, number of deaths, and case-fatality rates were compared between COVID19 patients with IDD and without IDD. Age distributions for number of cases and number of deaths were computed for both patient groups. Deaths occurring within 30 days of the date of first COVID-19 documentation in the EMR were identified and used to calculate case-fatality rates and 95&#37; confidence intervals. Age groups were selected based upon the knowledge that COVID-19 rates are substantially lower among children, &#91;1&#93; and that a disproportionately lower percent of adults with IDD live into older age. &#91;2&#93;</p>
<p>We excluded patients with diagnosis codes of other specified viral infection &#40;ICD-9 code: 097.89&#41; or suspected exposure to other biologic agents &#40;ICD-10 code: Z03.818&#41; during the same timeframe</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Intellectual and Developmental Disability and COVID-19 Case-fatality Trends: TriNetX Analysis</em>. <a href="https://jacobzelko.com/07192020022823-intellectual-trinetx-analysis">https://jacobzelko.com/07192020022823-intellectual-trinetx-analysis</a>. July 19 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; CDC, “Severe outcomes among patients with coronavirus disease 2019 &#40;COVID-19&#41;—United States, February 12–March 16, 2020,” MMWR Morb Mortal Wkly Rep, vol. 69, no. 12, pp. 343–346, 2020.</p>
<p>&#91;2&#93; S. Landes, J. Stevens, and M. Turk, “Heterogeneity in age at death for adults with developmental disability,” J. Intellect. Disabil. Res., vol. 63, no. 12, pp. 1482–1487, 2019.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 19 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Covid-19 Outcomes Among People With Intellectual And Developmental Disability Living In Residential Group Homes In New York State  ]]>
  </title>
  <link> https://jacobzelko.com/07192020031136-covid-outcomes-disabilities/index.html </link>
  <guid> https://jacobzelko.com/07192020031136-covid-outcomes-disabilities/index.html </guid>
  <description>
    <![CDATA[  Outcomes for individuals living with intellectual and developmental disabilities during the COVID-19 pandemic  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Covid-19 Outcomes Among People With Intellectual And Developmental Disability Living In Residential Group Homes In New York State</h1>
<p><strong>Date:</strong> July 18 2020</p>
<p><strong>Summary:</strong> Outcomes for individuals living with intellectual and developmental disabilities during the COVID-19 pandemic</p>
<p><strong>Keywords:</strong> ##bibliography #archive</p>
<h1>Bibliography</h1>
<p>S. D. Landes, M. A. Turk, M. K. Formica, K. E. McDonald, and J. D. Stevens, &quot;COVID-19 outcomes among people with intellectual and developmental disability living in residential group homes in New York State,&quot; Disability and Health Journal, p. 100969, Jun. 2020, doi: 10.1016/j.dhjo.2020.100969.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Methods</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p><strong>Hypothesis:</strong> COVID-19 case rates, case fatality, and mortality rates will be elevated for IDD persons abiding in residential group homes.</p>
<h3 id="methods">Methods</h3>
<p>They assume the majority of cases reported in this study are likely for symptomatic individuals.</p>
<p>Residential group home data are from New York Disability Advocates. Homes typically have 7 residents, but range from between 4 and 14 residents. All residents are age 18 and over. NYDA data includes: number of residents, COVID-19 confirmed positive cases, and COVID-19 deaths.</p>
<p>Residential group homes are required to complete a COVID-19 screen and temperature check at least once per day in homes that have not had a prior confirmed case. For a prior confirmed case, screening and checks once per shift. &#91;1&#93;</p>
<p>IDD individuals experience health disparities and high prevalence of comorbidities. &#91;2&#93; Many of which areassociated with more severe COVID19 outcomes. &#91;3&#93;, &#91;4&#93; There is a paucity of IDD health research. &#91;5&#93;, &#91;6&#93; Furthermore, the CDC only issued COVID-19 guidance relevant to this population in late May. <em>RQ: That&#39;s absurd how long it took the CDC to issue guidelines about this population. I wonder if WHO has issued any guidelines related to individuals with IDD?</em></p>
<p>There may be increased risk from COVID-19 for individuals living in congregate care settings due to difficulty in maintaining physical distancing. &#91;7&#93;–&#91;9&#93; It is estimated that 13&#37; of IDD adults reside in congregate care settings, &#91;10&#93; with shared use of essential living spaces, closeproximity to others, high levels of personal care assistancefrom staff, and multiple shift staffing patterns. &#91;11&#93;  <em>RQ: It seems like the authors are insinuating that individauls with IDD are at increased risk for COVID19 due to group care facilities.  Not so much biologic dysfunction. However, I think they say later there is biologic concern.</em></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Covid-19 Outcomes Among People With Intellectual And Developmental Disability Living In Residential Group Homes In New York State</em>. <a href="https://jacobzelko.com/07192020031136-covid-outcomes-disabilities">https://jacobzelko.com/07192020031136-covid-outcomes-disabilities</a>. July 18 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; Office for People with Developmental Disabilities, “Revised Staffing Guidance for Management of COVID-19,” Jun. 12, 2020. https://opwdd.ny.gov/system/files/documents/2020/06/6.12.2020-opwdd<em>covid19</em>staffguidance_updated-symptoms.pdf &#40;accessed Jul. 14, 2020&#41;.</p>
<p>&#91;2&#93; V. Prasher and M. Janicki, Physical health of adults with intellectual disabilities. John Wiley &amp; Sons, 2008.</p>
<p>&#91;3&#93; Centers for Disease Control, “Preliminary Estimates of the Prevalence of Selected Underlying Health Conditions Among Patients with Coronavirus Disease 2019 — United States, February 12–March 28, 2020.” MMWR Morb Mortal Wkly Rep, 2020.</p>
<p>&#91;4&#93; M. A. Turk, S. D. Landes, M. K. Formica, and K. D. Goss, “Intellectual and developmental disability and COVID-19 case-fatality trends: TriNetX analysis,” Disability and Health Journal, p. 100942, May 2020, doi: 10.1016/j.dhjo.2020.100942.</p>
<p>&#91;5&#93; C. Y. Spong and D. W. Bianchi, “Improving public health requires inclusion of underrepresented populations in research,” Jama, vol. 319, no. 4, pp. 337–338, 2018.</p>
<p>&#91;6&#93; G. L. Krahn, D. K. Walker, and R. Correa-De-Araujo, “Persons with disabilities as an unrecognized health disparity population,” Am. J. Public Health, vol. 105, no. S2, pp. S198–S206, 2015.</p>
<p>&#91;7&#93; P. Chidambaram, “State reporting of cases and deaths due to COVID-19 in long-term care facilities,” San Franc. Kais. Fam. Found., 2020.</p>
<p>&#91;8&#93; J. Solis, C. Franco-Paredes, A. F. Henao-Martínez, M. Krsak, and S. M. Zimmer, “Structural vulnerability in the united states revealed in three waves of novel coronavirus disease &#40;covid-19&#41;,” Am. J. Trop. Med. Hyg., p. tpmd200391, 2020.</p>
<p>&#91;9&#93; CDC, “Communities, Schools, Workplaces, &amp; Events,” Apr. 30, 2020. https://www.cdc.gov/coronavirus/2019-ncov/community/shared-congregate-house/guidance-shared-congregate-housing.html &#40;accessed Jul. 15, 2020&#41;.</p>
<p>&#91;10&#93; D. Braddock, R. Hemp, E. Tanis, J. Wu, and L. Haffer, “The state of the states in intellectual and developmental disabilities, 2017 washington,” DC Am. Assoc. Intellect. Dev. Disabil., 2017.</p>
<p>&#91;11&#93; Centers for Disease Control, “COVID-19 Guidance for Shared or Congregate Housing | CDC,” Apr. 25, 2020. https://www.cdc.gov/coronavirus/2019-ncov/community/shared-congregate-house/guidance-shared-congregate-housing.html &#40;accessed Jul. 22, 2020&#41;.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Sat, 18 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  TriNet  ]]>
  </title>
  <link> https://jacobzelko.com/07192020013500-trinetx-covid/index.html </link>
  <guid> https://jacobzelko.com/07192020013500-trinetx-covid/index.html </guid>
  <description>
    <![CDATA[  An overview of what the TriNetX COVID-19 research platform is and how it works  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>TriNet</h1>
<p><strong>Date:</strong> July 18 2020</p>
<p><strong>Summary:</strong> An overview of what the TriNetX COVID-19 research platform is and how it works</p>
<p><strong>Keywords:</strong> ##zettel #covid19 ##pandemic #health #dataset #EMR #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>ICD10 Codes for COVID19 from TriNetX</li><li>LOINC COVID19 Codes</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>The TriNetX COVID-19 Research Network Platform is a network of EMR data from 42 health care organizations designed to facilitate research related to COVID-19. &#91;1&#93;, &#91;2&#93;</p>
<p>TriNetX provides access to de-identified aggregate EMR data including information such as &#91;1&#93;, &#91;2&#93;:</p>
<ul>
<li><p>Demographics</p>
</li>
<li><p>Diagnoses</p>
</li>
<li><p>Procedures</p>
</li>
<li><p>Medications</p>
</li>
<li><p>Laboratory values</p>
</li>
<li><p>Genomics</p>
</li>
</ul>
<h3 id="icd10_codes_for_covid19_from_trinetx">ICD10 Codes for COVID19 from TriNetX</h3>
<ul>
<li><p>B34.2</p>
</li>
<li><p>B97.29</p>
</li>
<li><p>J12.81</p>
</li>
<li><p>U07.1</p>
</li>
<li><p>U07.2</p>
</li>
</ul>
<h3 id="loinc_covid19_codes">LOINC COVID19 Codes</h3>
<ul>
<li><p>94500-6</p>
</li>
<li><p>94315-9</p>
</li>
<li><p>94309-2</p>
</li>
<li><p>94533-7</p>
</li>
<li><p>94534-5</p>
</li>
<li><p>94559-2</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>TriNet</em>. <a href="https://jacobzelko.com/07192020013500-trinetx-covid">https://jacobzelko.com/07192020013500-trinetx-covid</a>. July 18 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; J. Stacey and M. Mehta, “Using EHR data extraction to streamline the clinical trial process,” Clin. Res., vol. 4, pp. 2–7, 2017.</p>
<p>&#91;2&#93; M. Stapff, “Use of electronic health data in clinical development,” Pharm. Ind, vol. 79, no. 2, pp. 204–210, 2017.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 18 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Intellectual and Developmental Disability  ]]>
  </title>
  <link> https://jacobzelko.com/07192020025408-intellectual-developmental-disability/index.html </link>
  <guid> https://jacobzelko.com/07192020025408-intellectual-developmental-disability/index.html </guid>
  <description>
    <![CDATA[  What is Intellectual and Developmental Disability  ]]>
  </description>  
  
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<h1>Intellectual and Developmental Disability</h1>
<p><strong>Date:</strong> July 18 2020</p>
<p><strong>Summary:</strong> What is Intellectual and Developmental Disability</p>
<p><strong>Keywords:</strong> ##zettel #intellectual #developmental #disability #disability ##health #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Intellectual and Developmental Disability &#40;IDD&#41; is a lifelong disability that manifests before age 18. It imposes limits on areas of learning, language, and behavior. &#91;1&#93;</p>
<p>An estimated 2.6 - 4 million people with intellectual and developmental disabilities reside in US community settings. &#91;2&#93;, &#91;3&#93; <em>RQ: I wonder if this includes autistic individuals</em></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Intellectual and Developmental Disability</em>. <a href="https://jacobzelko.com/07192020025408-intellectual-developmental-disability">https://jacobzelko.com/07192020025408-intellectual-developmental-disability</a>. July 18 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; CDC, “Developmental Disabilities | CDC,” Sep. 26, 2019. https://www.cdc.gov/ncbddd/developmentaldisabilities/index.html &#40;accessed Jul. 14, 2020&#41;.</p>
<p>&#91;2&#93; S. A. Larson, K. C. Lakin, L. Anderson, N. Kwak Lee, J. H. Lee, and D. Anderson, “Prevalence of mental retardation and developmental disabilities: Estimates from the 1994/1995 National Health Interview Survey Disability Supplements,” Am. J. Ment. Retard., vol. 106, no. 3, pp. 231–252, 2001.</p>
<p>&#91;3&#93; G. T. Fujiura, “Continuum of intellectual disability: Demographic evidence for the ‘forgotten generation’,” Ment. Retard., vol. 41, no. 6, pp. 420–429, 2003.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Sat, 18 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Could Autism Spectrum Disorders Be A Risk Factor For covid-19?  ]]>
  </title>
  <link> https://jacobzelko.com/07192020034934-asd-risk-factor/index.html </link>
  <guid> https://jacobzelko.com/07192020034934-asd-risk-factor/index.html </guid>
  <description>
    <![CDATA[  Autism Spectrum Disorders as a potential risk factor in COVID-19 outcomes  ]]>
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    <![CDATA[  
<h1>Could Autism Spectrum Disorders Be A Risk Factor For covid-19?</h1>
<p><strong>Date:</strong> July 18 2020</p>
<p><strong>Summary:</strong> Autism Spectrum Disorders as a potential risk factor in COVID-19 outcomes</p>
<p><strong>Keywords:</strong> ##bibliography #asd #autism #covid19 ##pandemic #archive</p>
<h1>Bibliography</h1>
<p>M. E. de Sousa Lima, L. C. M. Barros, and G. F. Aragão, &quot;Could Autism Spectrum Disorders be a Risk Factor for COVID-19?,&quot; Med Hypotheses, May 2020, doi: 10.1016/j.mehy.2020.109899.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Cytokine Observations in ASD and COVID19</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<blockquote>
<p><strong>NOTE:</strong> The journal medical hypothesis lacks a standard peer review process, but is often utilized to posit ideas quickly.</p>
</blockquote>
<p><strong>Purpose of paper:</strong> consolidate data to support the hypothesis of ASD being a risk for COVID19 like other risks.</p>
<p>Involves several modifications at the genetic and at the immune level &#40;e.g. increases of inflammatorycytokines and abnormal immune response in several levels&#41;. &#91;1&#93; Some are conditions considered risk-factor of symptomatic COVID-19 and its mortality.</p>
<h3 id="cytokine_observations_in_asd_and_covid19">Cytokine Observations in ASD and COVID19</h3>
<p>Initially there is an endogenous immune response in the presence of COVID19. The response is linked to the destruction level of the virus, the patient’s innateresponse, and it determines its inflammation status and symptomatology. &#91;2&#93;</p>
<p>Secretory increases of ACE-2 was correlated with COVID-19 patients &#91;3&#93;. There seem to exist an ACE-2 superexpression leading to a pro-inflammatory state, related to cardiac and pulmonary damage &#91;3&#93; ACE-2 is a regulator in angiotensin-2transformation into angiotensin-&#40;1-7&#41; metabolite. It has inflammatory effects producing vasodilatation, anti-proliferation and apoptosis. This is common to CVD conditions &#91;4&#93;.</p>
<p>Coronavirus also has the characteristic of being neuroinvasive. &#91;5&#93; This characteristic shows via:- Febrile seizures - Encephalitis - Convulsions - Change in mental status Some neurological symptomsfound in COVID-19 patients are non-specific, such as headache, dizziness and confusion. Neurological symptoms were directly related to patients. &#91;6&#93; Thereby, we can hypothesize that its physiopathology might have a strict relation with the nervous system.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Could Autism Spectrum Disorders Be A Risk Factor For covid-19?</em>. <a href="https://jacobzelko.com/07192020034934-asd-risk-factor">https://jacobzelko.com/07192020034934-asd-risk-factor</a>. July 18 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; H. Ormstad, V. Bryn, O. D. Saugstad, O. Skjeldal, and M. Maes, “Role of the immune system in autism spectrum disorders &#40;ASD&#41;,” CNS Neurol. Disord.-Drug Targets Former. Curr. Drug Targets-CNS Neurol. Disord., vol. 17, no. 7, pp. 489–495, 2018.</p>
<p>&#91;2&#93; Y. Shi et al., “COVID-19 infection: The perspectives on immune responses,” 2020.</p>
<p>&#91;3&#93; Y.-Y. Zheng, Y.-T. Ma, J.-Y. Zhang, and X. Xie, “COVID-19 and the cardiovascular system,” Nat. Rev. Cardiol., vol. 17, no. 5, pp. 259–260, 2020.</p>
<p>&#91;4&#93; A. J. Turner, J. A. Hiscox, and N. M. Hooper, “ACE2: From vasopeptidase to SARS virus receptor,” Trends Pharmacol. Sci., vol. 25, no. 6, pp. 291–294, 2004.</p>
<p>&#91;5&#93; A. A. Asadi-Pooya and L. Simani, “Central nervous system manifestations of COVID-19: A systematic review,” J. Neurol. Sci., p. 116832, 2020.</p>
<p>&#91;6&#93; G. Conde, L. D. Q. Pájaro, I. D. Q. Marzola, Y. R. Villegas, and L. R. M. Salazar, “Neurotropism of SARS-CoV 2: Mechanisms and manifestations,” J. Neurol. Sci., 2020.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 18 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Indirect Self Harm  ]]>
  </title>
  <link> https://jacobzelko.com/07122020174529-indirect-self-harm/index.html </link>
  <guid> https://jacobzelko.com/07122020174529-indirect-self-harm/index.html </guid>
  <description>
    <![CDATA[  Indirect self harm definition and associated examples  ]]>
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  <content:encoded>
    <![CDATA[  
<h1>Indirect Self Harm</h1>
<p><strong>Date:</strong> July 12 2020</p>
<p><strong>Summary:</strong> Indirect self harm definition and associated examples</p>
<p><strong>Keywords:</strong> ##zettel #self #harm #indirect #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p><strong>Indirect self-harm</strong> &#40;ISH&#41; are non-suicidal actions that individuals take to physically mistreat or abuse themselves. It does not immediately lead to direct bodily damage &#91;1&#93;. Examples of ISH are eating disorders, remaining in physically abusive relationships, extended abuse of substances, and flippant behavior &#91;1&#93;.</p>
<p>Indirect self-harm &#40;ISH&#41; is conceptually different from <a href="https://jacobzelko.com/07122020185239-direct-self-harm">direct self-harm</a> &#40;DSH&#41;. Generally, ISH is an expression of centering oneself. It is a way to control one&#39;s feelings or to exact punishment. &#91;2&#93; As such, ISH can be a coping mechanism to handle emotional anguish, rage and frustration. &#91;1&#93; Some use it as a means to lower tension &#91;3&#93;.</p>
<p>Eating disorders have the highest mortality rate of all mental illnesses. &#91;4&#93; For women aged 15-24, mortality rates related to Anorexia are 12 times greater than other mortality rates. &#91;5&#93; As such, the eating disorder community is generally the most prolific indirect self-harm community. A majority of the literature about  indirect self-harm literature is centered around it &#91;6&#93;–&#91;9&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Indirect Self Harm</em>. <a href="https://jacobzelko.com/07122020174529-indirect-self-harm">https://jacobzelko.com/07122020174529-indirect-self-harm</a>. July 12 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; S. A. S. Germain and J. M. Hooley, “Direct and indirect forms of non-suicidal self-injury: Evidence for a distinction,” Psychiatry Res., vol. 197, no. 1–2, pp. 78–84, 2012.</p>
<p>&#91;2&#93; D. Owens, J. Horrocks, and A. House, “Fatal and non-fatal repetition of self-harm: Systematic review,” Br. J. Psychiatry, vol. 181, no. 3, pp. 193–199, 2002.</p>
<p>&#91;3&#93; K. L. Gratz, “Measurement of deliberate self-harm: Preliminary data on the Deliberate Self-Harm Inventory,” J. Psychopathol. Behav. Assess., vol. 23, no. 4, pp. 253–263, 2001.</p>
<p>&#91;4&#93; P. F. Sullivan et al., “Mortality in anorexia nervosa,” Am. J. Psychiatry, vol. 152, no. 7, pp. 1073–1074, 1995.</p>
<p>&#91;5&#93; F. R. Smink, D. Van Hoeken, and H. W. Hoek, “Epidemiology of eating disorders: Incidence, prevalence and mortality rates,” Curr. Psychiatry Rep., vol. 14, no. 4, pp. 406–414, 2012.</p>
<p>&#91;6&#93; P. A. Adler and P. Adler, “Self-injurers as loners: The social organization of solitary deviance,” Deviant Behav., vol. 26, no. 4, pp. 345–378, 2005.</p>
<p>&#91;7&#93; S. R. Brotsky and D. Giles, “Inside the ‘pro-ana’ community: A covert online participant observation,” Eat. Disord., vol. 15, no. 2, pp. 93–109, 2007.</p>
<p>&#91;8&#93; R. A. Fleming-May and L. E. Miller, “‘I’m scared to look. But I’m dying to know’: Information seeking and sharing on Pro-Ana weblogs,” Proc. Am. Soc. Inf. Sci. Technol., vol. 47, no. 1, pp. 1–9, 2010.</p>
<p>&#91;9&#93; L. R. Shade, “Weborexics: The ethical issues surrounding pro-ana websites,” Acm Sigcas Comput. Soc., vol. 33, no. 4, p. 2, 2003.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 12 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Direct Self-Harm  ]]>
  </title>
  <link> https://jacobzelko.com/07122020185239-direct-self-harm/index.html </link>
  <guid> https://jacobzelko.com/07122020185239-direct-self-harm/index.html </guid>
  <description>
    <![CDATA[  An overview of direct self harm and how it differs from other types of self-harming behaviors  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Direct Self-Harm</h1>
<p><strong>Date:</strong> July 12 2020</p>
<p><strong>Summary:</strong> An overview of direct self harm and how it differs from other types of self-harming behaviors</p>
<p><strong>Keywords:</strong> ##zettel #direct #self #harm ##mentalhealth #illness #mental #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Direct self-harm is defined as the deliberate, direct destruction or alteration of body tissue without conscious suicidal intent, but resulting in injury severe enough for tissue damage to occur &#91;1&#93;. </p>
<p>Examples are of Direct Self Harm are:</p>
<ul>
<li><p>Cutting, burning, scratching, and hitting of oneself &#91;2&#93;</p>
</li>
<li><p>Skin bleaching &#91;3&#93;</p>
</li>
<li><p>Hair-pulling &#91;4&#93;</p>
</li>
<li><p>Ingesting hazardous chemicals &#91;5&#93;</p>
</li>
</ul>
<p>The term &quot;direct self-harm&quot; is often used interchangeably with the terms self-injury &#91;6&#93;, self-mutilation &#91;7&#93;, and self-wounding &#91;8&#93;. Despite the exact wording, the distinction of direct self-harm is that it is non-suicidal but does cause direct injury to the body.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Direct Self-Harm</em>. <a href="https://jacobzelko.com/07122020185239-direct-self-harm">https://jacobzelko.com/07122020185239-direct-self-harm</a>. July 12 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; A. R. Favazza, “The coming of age of self-mutilation,” J. Nerv. Ment. Dis., vol. 186, no. 5, pp. 259–268, 1998.</p>
<p>&#91;2&#93; B. Møhl, P. La Cour, and A. Skandsen, “Non-suicidal self-injury and indirect self-harm among Danish high school students,” Scand. J. Child Adolesc. Psychiatry Psychol., vol. 2, no. 1, pp. 11–18, 2014.</p>
<p>&#91;3&#93; C. A. Charles, “Skin bleaching, self-hate, and black identity in Jamaica,” J. Black Stud., vol. 33, no. 6, pp. 711–728, 2003.</p>
<p>&#91;4&#93; B. A. Iwata, M. F. Dorsey, K. J. Slifer, K. E. Bauman, and G. S. Richman, “Toward a functional analysis of self-injury,” J. Appl. Behav. Anal., vol. 27, no. 2, pp. 197–209, 1994.</p>
<p>&#91;5&#93; K. L. Gratz, “Measurement of deliberate self-harm: Preliminary data on the Deliberate Self-Harm Inventory,” J. Psychopathol. Behav. Assess., vol. 23, no. 4, pp. 253–263, 2001.</p>
<p>&#91;6&#93; E. D. Klonsky, “The functions of deliberate self-injury: A review of the evidence,” Clin. Psychol. Rev., vol. 27, no. 2, pp. 226–239, 2007.</p>
<p>&#91;7&#93; A. R. Favazza and R. J. Rosenthal, “Diagnostic issues in self-mutilation,” Psychiatr. Serv., vol. 44, no. 2, pp. 134–140, 1993.</p>
<p>&#91;8&#93; D. Tantam and J. Whittaker, “Personality disorder and self-wounding,” Br. J. Psychiatry, vol. 161, no. 4, pp. 451–464, 1992.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 12 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  False Expertise  ]]>
  </title>
  <link> https://jacobzelko.com/07132020022756-media-timothy/index.html </link>
  <guid> https://jacobzelko.com/07132020022756-media-timothy/index.html </guid>
  <description>
    <![CDATA[  How Timothy speaks truth to today about false expertise abounding from social media  ]]>
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    <![CDATA[  
<h1>False Expertise</h1>
<p><strong>Date:</strong> July 12 2020</p>
<p><strong>Summary:</strong> How Timothy speaks truth to today about false expertise abounding from social media</p>
<p><strong>Keywords:</strong> ##zettel #social #media #polarization #knowledge #1timothy #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<blockquote>
<p>As I urged you when I went into Macedonia, stay there in Ephesus so that you may command certain people not to teach false doctrines any longer or to devote themselves to myths and endless genealogies. Such things promote controversial speculations rather than advancing God’s work — which is by faith. The goal of this command is love, which comes from a pure heart and a good conscience and a sincere faith. Some have departed from these and have turned to meaningless talk. They want to be teachers of the law, but they do not know what they are talking about or what they so confidently affirm.</p>
</blockquote>
<ul>
<li><p>1 Timothy 1:3 - 7</p>
</li>
</ul>
<p>I was reading this passage in 1 Timothy and was thinking about how it very much relates to one of the current issues being faced in the world. Social media&#39;s negative impact on individuals. Particularly the parallels drawn between Paul&#39;s letter and today are very much talking about the same thing. People being drawn away to nonsensical things that are not useful to life. Or, worse, becoming supposed &quot;experts&quot; in fields that they truly know nothing about but have heard enough <em>things</em> to give them the impression of having learned something.</p>
<p>And Paul very explicitly calls these people out by saying they do not know anything. Furthermore, Paul states how these sort of meaningless discussions only promote controversial speculations rather than actually pushing us forward to a meaningful goal. This is very much a problem being faced in today&#39;s society where social media is being used to promote narratives or stories as a means of information but in reality, does not deliver on anything. Furthermore, the polarization that comes from such negative discussion is almost exactly the same as Paul is describing. The only real difference may be how this is impacting so many more individuals than in the past, but the same problems persist: polarization, false impressions of expertise, and endless arguments or quabbling. </p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>False Expertise</em>. <a href="https://jacobzelko.com/07132020022756-media-timothy">https://jacobzelko.com/07132020022756-media-timothy</a>. July 12 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 12 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Suicide  ]]>
  </title>
  <link> https://jacobzelko.com/07122020192840-suicide/index.html </link>
  <guid> https://jacobzelko.com/07122020192840-suicide/index.html </guid>
  <description>
    <![CDATA[  Defining and exploring what suicide is  ]]>
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    <![CDATA[  
<h1>Suicide</h1>
<p><strong>Date:</strong> July 12 2020</p>
<p><strong>Summary:</strong> Defining and exploring what suicide is</p>
<p><strong>Keywords:</strong> ##zettel #suicide #mental #illness #death #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Suicide is defined as the act of purposefully ending one’s own life. &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Suicide</em>. <a href="https://jacobzelko.com/07122020192840-suicide">https://jacobzelko.com/07122020192840-suicide</a>. July 12 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; M. K. Nock, “Self-injury,” Annu. Rev. Clin. Psychol., vol. 6, pp. 339–363, 2010.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 12 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Rest Is Best: The Role of Rest and Task Interruptions on Vigilance  ]]>
  </title>
  <link> https://jacobzelko.com/07122020172346-rest-best/index.html </link>
  <guid> https://jacobzelko.com/07122020172346-rest-best/index.html </guid>
  <description>
    <![CDATA[  How resting during vigilance tasks can actually improve focus long-term  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Rest Is Best: The Role of Rest and Task Interruptions on Vigilance</h1>
<p><strong>Date:</strong> July 12 2020</p>
<p><strong>Summary:</strong> How resting during vigilance tasks can actually improve focus long-term</p>
<p><strong>Keywords:</strong> ##bibliography #vigilance #rest  #archive</p>
<h1>Bibliography</h1>
<p>W. S. Helton and P. N. Russell, &quot;Rest is best: The role of rest and task interruptions on vigilance,&quot; Cognition, vol. 134, pp. 165–173, Jan. 2015, doi: 10.1016/j.cognition.2014.10.001.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Based on the results, taking rest is best for maintaining vigilance. A different perspective can proffer an explanation for this: </p>
<p>Differing tasks which interrupt one during a vigilance task may both utilize distinctly unique resources and require different amounts of resources. The tasks may have elicited different levels of cognitive load.</p>
<p>There exist on-going debate about the origins of vigilance decrement &#91;1&#93;. The best known is based on resource theory. However critics think it is a circular mode of reasoning &#91;2&#93;.</p>
<p>Current findings suggest that vigilance decrement comes from repeated use of executive resources. There may be domain specific interference when the primary task and activities during a break make use of the same resources.</p>
<p>The findings by Ariga do not support the idea that vigilance decrement is due to task under-load. &#91;3&#93; Knowing why resting can assist with refocusing is difficult. Perhaps, rest allowed participants to engage in day dreaming which eliminated task monotony. </p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Rest Is Best: The Role of Rest and Task Interruptions on Vigilance</em>. <a href="https://jacobzelko.com/07122020172346-rest-best">https://jacobzelko.com/07122020172346-rest-best</a>. July 12 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; W. S. Helton and J. S. Warm, “Signal salience and the mindlessness theory of vigilance,” Acta Psychol. &#40;Amst.&#41;, vol. 129, no. 1, pp. 18–25, 2008.</p>
<p>&#91;2&#93; D. Navon, “Resources—A theoretical soup stone?” Psychol. Rev., vol. 91, no. 2, p. 216, 1984.</p>
<p>&#91;3&#93; P. A. Hancock, “In search of vigilance: The problem of iatrogenically created psychological phenomena.” Am. Psychol., vol. 68, no. 2, p. 97, 2013.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 12 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Against Method  ]]>
  </title>
  <link> https://jacobzelko.com/07122020043224-against-method/index.html </link>
  <guid> https://jacobzelko.com/07122020043224-against-method/index.html </guid>
  <description>
    <![CDATA[  The use of anarchy as a philosophical approach to learning anything.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Against Method</h1>
<p><strong>Date:</strong> July 12 2020</p>
<p><strong>Summary:</strong> The use of anarchy as a philosophical approach to learning anything.</p>
<p><strong>Keywords:</strong> ##bibliography #education #philosophy #learning #archive #book #project</p>
<h1>Bibliography</h1>
<p>P. Feyerabend, <em>Against method</em>, 3rd ed. London ; New York: Verso, 1993.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>General Themes</li><li>Limits of Current Education</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="general_themes">General Themes</h3>
<p>The goal of Against Method is to show that all methodologies have limits.</p>
<p>&quot;Passion&quot;, in Kierkegaard&#39;s sense, should encourage playful exploration of ideas. This passion results in behavior that facilitates circumstances and ideas which can produce a logical framework regarding an idea. &#91;1&#93;  Feyerabend contends that people rely on too narrow and fixed frameworks to understand the world. Only one principle that guides learning under any circumstance of human development is the principle &quot;anything goes.&quot;</p>
<blockquote>
<p>_His central thesis somewhat reminds me of the teaching about everything being permissible but not everything being beneficial.</p>
</blockquote>
<p>I wonder how the two can be related fully._</p>
<p>Knowledge according to Feyerabend is not a harmonious convergence towards an ideal. Rather, it is an ocean of alternatives that forces ideas into succinct articulation. Each idea competitively contributes to the development of consciousness. This makes a lot of sense. Rather than ideas being fixed in the mind, they are ever open to change and influence. Unanimity of opinion works for tyranny contends Feyerabend. Variety however is needed for objective knowledge.</p>
<p><strong>Autonomy Principle:</strong> facts exist and are independent of whether one considers alternatives to the theory to be tested.</p>
<p><strong>Theoretical numerical disagreement:</strong> A theory determines a predicted value. What is obtained in reality differs from the prediction.</p>
<h3 id="limits_of_current_education">Limits of Current Education</h3>
<p>Scientific education has the aim of making concepts more accessible at the cost of strict and unchangeable rules.  An essential part of training inhibits intuitions that might lead to a blurring of boundaries. It does this by simplifying its participants in the following manner:</p>
<ol>
<li><p>A domain of research is defined.</p>
</li>
</ol>
<p>The domain is separated from the rest of history.</p>
<ol start="2">
<li><p>This domain is then given a &#39;logic&#39; of its own.</p>
</li>
<li><p>Training in such &#39;logic&#39; then conditions the domain&#39;s disciples.</p>
</li>
</ol>
<p>It makes their actions more uniform and it freezes large parts of the historical process as well.</p>
<ol start="4">
<li><p>Stable &#39;facts&#39;  independent of opinion, belief, and cultural background arise and persevere despite the vicissitudes of</p>
</li>
</ol>
<p>history.</p>
<p>Makes me think of Godel&#39;s principle that there is a limit to what can be proved within a given domain given the tools of that domain.</p>
<blockquote>
<p>Relevant Quote:  &quot;A person&#39;s religion, for example, or his metaphysics, or his sense of humour must not have the slightest connection with his scientific activity.</p>
</blockquote>
<p>His imagination is restrained, and even his language ceases to be his own.&quot;</p>
<p>The <strong>consistency condition</strong> of modern academia demands new hypotheses to agree with accepted theories. It preserves the older theory but not the better theory. Theories should only be changed when a theory disagrees with facts. Discussion of incompatible facts will lead to progress. Discussion of incompatible hypotheses will not.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Against Method</em>. <a href="https://jacobzelko.com/07122020043224-against-method">https://jacobzelko.com/07122020043224-against-method</a>. July 12 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; S. Kierkegaard, Kierkegaard’s writings, VI, volume 6: Fear and trembling/repetition. Princeton University Press, 2013.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 12 Jul 2020 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  Treatments for SARS-CoV  ]]>
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  <link> https://jacobzelko.com/07122020195122-sars-cov-treatments/index.html </link>
  <guid> https://jacobzelko.com/07122020195122-sars-cov-treatments/index.html </guid>
  <description>
    <![CDATA[  Known treatment methods for SARS-CoV  ]]>
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<h1>Treatments for SARS-CoV</h1>
<p><strong>Date:</strong> July 12 2020</p>
<p><strong>Summary:</strong> Known treatment methods for SARS-CoV</p>
<p><strong>Keywords:</strong> ##zettel #treatment #SARS-CoV ##health #coronavirus  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Primary to treating SARS-CoV was the use of ventilator machines. Treatments such as steroidals remain controversial regarding their effect on SARS patients. &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Treatments for SARS-CoV</em>. <a href="https://jacobzelko.com/07122020195122-sars-cov-treatments">https://jacobzelko.com/07122020195122-sars-cov-treatments</a>. July 12 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; S. N. J. Korsman, G. U. van Zyl, L. Nutt, M. I. Andersson, and W. Preiser, “Human coronaviruses,” in Virology, Elsevier, 2012, pp. 94–95. doi: 10.1016/B978-0-443-07367-0.00040-9.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 12 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Make It Stick: the Science of Successful Learning  ]]>
  </title>
  <link> https://jacobzelko.com/07122020164149-make-it-stick/index.html </link>
  <guid> https://jacobzelko.com/07122020164149-make-it-stick/index.html </guid>
  <description>
    <![CDATA[  How to not only remember things but to understand work  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Make It Stick: the Science of Successful Learning</h1>
<p><strong>Date:</strong> July 12 2020</p>
<p><strong>Summary:</strong> How to not only remember things but to understand work</p>
<p><strong>Keywords:</strong> ##bibliography #learning #education #psychology #archive</p>
<h1>Bibliography</h1>
<p>P. C. Brown, Make it stick: the science of successful learning. Cambridge, Massachusetts: The Belknap Press of Harvard University Press, 2014.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Feedback</li><li>Effects of Quizzing</li><li>Characteristics of Learning</li><li>Notable Quotes</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>The false idea that repetition improves memory traces back to the mid-1960&#39;s. Psychologist Endel Tulving, from the University of Toronto, tested people on their ability to remember lists of common English nouns.</p>
<h3 id="feedback">Feedback</h3>
<p>Feedback has been extensively studied. &#91;1&#93; It can lead to the following conditions:</p>
<ul>
<li><p>Strengthen effects of testing</p>
</li>
<li><p>Be of greater benefit if it&#39;s slightly delayed</p>
</li>
<li><p>Enhance positive and reduces the negative effects of multiple choice testing.</p>
</li>
</ul>
<p>Frequent immediate feedback can be detrimental to long-term learning for motor skills at it provides a crutch during practice that isn&#39;t present during the test. &#91;2&#93;</p>
<h3 id="effects_of_quizzing">Effects of Quizzing</h3>
<p>Quizzing produced a significant improvement relative to no quizzing or directed review of target concepts on unit exams and on cumulative semester and end-of-year exams. A well-placed review quiz produced benefits on the exams that were as robust as several repeated quizzes in some cases.</p>
<p>This phenomenon was first researched at Columbia Middle School. &#91;3&#93;, &#91;4&#93; They reported well-controlled experiments on the benefits of quizzing for middle school students&#39; performances on classroom exams in social studies and science.</p>
<h3 id="characteristics_of_learning">Characteristics of Learning</h3>
<ol>
<li><p>Learning needs memory</p>
</li>
<li><p>Learning is a lifelong endeavor.</p>
</li>
<li><p>Learning is an acquired skill; often counterintuitive.</p>
</li>
</ol>
<h3 id="notable_quotes">Notable Quotes</h3>
<blockquote>
<p><em>If you’re good at learning, you have an advantage in life.</em></p>
</blockquote>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Make It Stick: the Science of Successful Learning</em>. <a href="https://jacobzelko.com/07122020164149-make-it-stick">https://jacobzelko.com/07122020164149-make-it-stick</a>. July 12 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; A. C. Butler and H. L. Roediger, “Feedback enhances the positive effects and reduces the negative effects of multiple-choice testing,” Mem. Cognit., vol. 36, no. 3, pp. 604–616, 2008.</p>
<p>&#91;2&#93; A. W. Salmoni, R. A. Schmidt, and C. B. Walter, “Knowledge of results and motor learning: A review and critical reappraisal.” Psychol. Bull., vol. 95, no. 3, p. 355, 1984.</p>
<p>&#91;3&#93; M. A. McDaniel, P. K. Agarwal, B. J. Huelser, K. B. McDermott, and H. L. Roediger III, “Test-enhanced learning in a middle school science classroom: The effects of quiz frequency and placement.” J. Educ. Psychol., vol. 103, no. 2, p. 399, 2011.</p>
<p>&#91;4&#93; H. L. Roediger III, P. K. Agarwal, M. A. McDaniel, and K. B. McDermott, “Test-enhanced learning in the classroom: Long-term improvements from quizzing.” J. Exp. Psychol. Appl., vol. 17, no. 4, p. 382, 2011.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 12 Jul 2020 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  Ultralearning  ]]>
  </title>
  <link> https://jacobzelko.com/07082020163004-ultralearning/index.html </link>
  <guid> https://jacobzelko.com/07082020163004-ultralearning/index.html </guid>
  <description>
    <![CDATA[  A summary of what the ultralearning framework is  ]]>
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    <![CDATA[  
<h1>Ultralearning</h1>
<p><strong>Date:</strong> July 12 2020</p>
<p><strong>Summary:</strong> A summary of what the ultralearning framework is</p>
<p><strong>Keywords:</strong> ##bibliography #ultralearning #learning #framework #education #self #archive</p>
<h1>Bibliography</h1>
<p>S. Young, Ultralearning. HarperCollins Publishers, 2019.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Principles of Metalearning</li><li>Make a Roadmap for a Learning Project<ol><li>What Is the Project and What Does It Entail?</li><li>How Do We Approach The Project?</li></ol></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p><strong>Ultralearning</strong>: An intensive, self-directed study framework for quickly acquiring skills and knowledge.</p>
<h3 id="principles_of_metalearning">Principles of Metalearning</h3>
<ol>
<li><p>Make a roadmap for the skill you want to learn. Determine how best to learn the subject or skill you want to tackle.</p>
</li>
<li><p>Optimize your situation to make learning and concentrating, easy.</p>
</li>
<li><p>Learn by doing the thing you want to become good at.</p>
</li>
<li><p>Master your weakest points by seeking relentless improvement in those areas.</p>
</li>
<li><p>Test and push yourself to remember information as opposed to simply viewing it.</p>
</li>
<li><p>Feedback is not fun but use it and don&#39;t let your ego cloud useful insights.</p>
</li>
<li><p>Know why and what you forget. Begin to remember information for long-term benefit.</p>
</li>
<li><p>Build a thorough understanding of concepts via experimenting or playing with new ideas.</p>
</li>
</ol>
<h3 id="make_a_roadmap_for_a_learning_project">Make a Roadmap for a Learning Project</h3>
<p>You should invest ~10 percent of your expected learning time into research prior to starting a project.</p>
<h4 id="what_is_the_project_and_what_does_it_entail">What Is the Project and What Does It Entail?</h4>
<p>When asking the question of &quot;What&quot; regarding a learning project, break the knowledge of a subject into &quot;Concepts,&quot; &quot;Facts,&quot; and &quot;Procedures.&quot; This enables the understanding of concepts to be understood in flexible ways. Thankfully, when breaking done this information, facts generally only need to be memorized but a deep understanding may not be not required. In the same vein, procedures are actions that need to be performed and do not involve much conscious thinking.</p>
<h4 id="how_do_we_approach_the_project">How Do We Approach The Project?</h4>
<p>Employing the <strong>Emphasize/Exclude Method</strong> is to find areas of study that align with identified goals. Part of this method is to omit or delay from your curriculum material which do not align with your goals. Familiarize yourself with what is common for <strong>benchmarking</strong>, or the ways people learn a skill or subject, regarding your project.</p>
<p><strong>Directness:</strong> learning being directly related to the way you want to use the information.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Ultralearning</em>. <a href="https://jacobzelko.com/07082020163004-ultralearning">https://jacobzelko.com/07082020163004-ultralearning</a>. July 12 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  Social Determinants of Health  ]]>
  </title>
  <link> https://jacobzelko.com/07112020161337-social-determinants-health/index.html </link>
  <guid> https://jacobzelko.com/07112020161337-social-determinants-health/index.html </guid>
  <description>
    <![CDATA[  The comprehensive inception of social determinants in healthcare and society  ]]>
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    <![CDATA[  
<h1>Social Determinants of Health</h1>
<p><strong>Date:</strong> July 11 2020</p>
<p><strong>Summary:</strong> The comprehensive inception of social determinants in healthcare and society</p>
<p><strong>Keywords:</strong> ##bibliography ##publichealth ##anthropology ##health #social #determinants #society #archive</p>
<h1>Bibliography</h1>
<p>M. Marmot and R. Wilkinson, Social Determinants of Health, 2nd ed. Oxford University Press, 2006.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>The Fallacy of Diseases of the Rich and Poor</li><li>The Fight Or Flight Response and Its Role in Disease<ol><li>Sympatho-Adrenal Pathway</li><li>Hypothalamus-Pituitary-Adrenal &#40;HPA&#41; Axis</li><li>Effects</li><li>Overall Response to Stress</li><li>Social Effects on Well-Being</li></ol></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Poverty of material conditions alone does not explain a biological explanation for causes of impaired lifespans.</p>
<p>It is historically noted that there is a general shortage of randomized control trials to determine the utility of interventions in all areas of public health. DIscussion about the lack of controlled trials in public health pertaining to the social determinants area and the field of public health in general.</p>
<p>James Lind is rightly acknowledged as an exceptional public health figure because as early as the 18th century he conducted controlled investigations to show citrus fruit cured scurvy. By contrast, John Snow’s determination in the 19th century that ingestion of contaminated water led to cholera, relied on careful observation and the exercise of reasoned judgement rather than his uncontrolled experiment of removing the handle of the Broad Street pump.</p>
<p>When approaching the area of social determinants, risk factors were first separated from behaviours and biological markers.</p>
<p>Causes of the causes can be thought of as the underlying issues that give rise or is directly related to a given issue. </p>
<p>Second method of approach by Marmot to examine the social determinants of health. To give an example: &quot;It is not an accident that people consume diets high in saturated fat and salt. It represents the nature of the food supply, culture, affordability, and availability, among other influences.&quot;</p>
<p>The psychosocial understanding of the social determinants of health emphasizes experiential personal accounts. Negative accounts which induce acute and chronic stress affect human biology. This ultimately leads to impairment of physical and mental health.</p>
<p>The social gradient of health goes from the high echelons of society to those living in dire conditions. Each step down this hierarchy also lowers standards of health.</p>
<h3 id="the_fallacy_of_diseases_of_the_rich_and_poor">The Fallacy of Diseases of the Rich and Poor</h3>
<p>There existed the notion that there were diseases of the rich and of the poor. Mortality rate reflected this belief. However, this was false.</p>
<p>The impoverished are not the only ones to anguish. An example being that despite civil servants being economically well-off, it was found there was an inverse relationship between employment grade and risk for causes of death.</p>
<p>Stress does not only affect senior managers or others in positions of great public responsibility. High effort linked to high reward is generally health promoting. &#91;1&#93; Poor health is seen where there is limited, real or perceived, control over a situation with a small chance of reward where the situation is psychologically demanding during an extended period of time. &#91;2&#93;</p>
<p>Recent research suggests that infectionand immunity may also be important in two poorly recognized ways </p>
<ol>
<li><p>A contributory cause of diseases not previously considered to be due to infection</p>
</li>
<li><p>Chronic stress may alter susceptibility to infection and its severity.</p>
</li>
</ol>
<h3 id="the_fight_or_flight_response_and_its_role_in_disease">The Fight Or Flight Response and Its Role in Disease</h3>
<p>The fight or flight response is brief and rather unusual for animals. The response can be vital for an animal&#39;s survival. For humans, emergencies are comparatively rare. However, for people, regular psychological demands and challenges may activate the fight or flight response too often. </p>
<p>Fight-or-flight adapts well to acute stress but may not to chronic stress in today’s urban environment. &#91;4&#93;</p>
<p>Prolonged elevated cortisol amounts can manifest paranoia or depression.</p>
<h4 id="sympatho-adrenal_pathway">Sympatho-Adrenal Pathway</h4>
<p><img src="07132020192025-heart-adrenaline.png" alt="" /></p>
<p>Heart rate is directly impacted by sympathetic nerve impulses. It is indirectly affected by circulating adrenaline level.</p>
<p>Increased &quot;stickiness&quot; in platelets occurs due to increases in adrenaline in the blood. Blood tends to become more concentrated and viscous at the same time. Stress-related hormones can increase the output of fibrinogen from the liver. This may add to formation of arterial plaques and increased risks of heart disease and stroke &#91;5&#93;, &#91;6&#93;</p>
<p>The sympatho-adrenal pathway activates, prepares for, or maintains physical exertion. It causes psychological arousal and energy mobilization. It inhibits functions irrelevant to immediatesurvival. Degree of activation depends on stressorand its duration. Thesympatho-adrenal pathway can be switched off rapidly.</p>
<p>The first pathway is the sympatho-adrenal pathway and activates quickly. It consists of the sympathetic branch of the <a href="https://jacobzelko.com/12302020174059-autonomic-nervous-system">autonomic nervous system</a>. The pathway produces two hormones:</p>
<ol>
<li><p>Noradrenaline at nerve endings</p>
</li>
<li><p>Adrenaline directly into the bloodstream by the medulla &#40;or middle part&#41; of the adrenal glands.</p>
</li>
</ol>
<p>This produces the sensation of our stomach tightening when being exposed to sudden shock.</p>
<h4 id="hypothalamus-pituitary-adrenal_hpa_axis">Hypothalamus-Pituitary-Adrenal &#40;HPA&#41; Axis</h4>
<p><img src="07132020192442-hpa-axis.png" alt="" /></p>
<blockquote>
<p>Figure from Chapter 2 of &#91;7&#93;</p>
</blockquote>
<p>The Hypothalamus-Pituitary-Adrenal &#40;HPA&#41; Axis operates over minutes and hours. Its key components are the three corresponding hormone secreting glands. The Hypothalamic-Pituitary-Adrenal &#40;HPA&#41; axis is the slower, seconday response to stress. It results in cortisol release into the bloodstream from adrenal glands. The dotted lines show feedback controls which regulate release of cortisol and other corticosteroids from the adrenal cortex.</p>
<h4 id="effects">Effects</h4>
<p>Circulating adrenaline and sympathetic nerve activity generated during the Fight or Flight response:</p>
<ul>
<li><p>Accelerate heart rate</p>
</li>
<li><p>Increase metabolic rate</p>
</li>
<li><p>Increase blood pressure</p>
</li>
<li><p>Increase sensory vigilance</p>
</li>
<li><p>Increase sweat secretion</p>
</li>
<li><p>Dilate pupils</p>
</li>
<li><p>Dilate airways</p>
</li>
<li><p>Dilate blood vessels in skeletal muscles</p>
</li>
<li><p>Constrict blood vessels in skin and gut</p>
</li>
<li><p>Inhibit salivation</p>
</li>
</ul>
<p>Glucocorticoid hormones, like cortisol, have metabolic and psychological effects. These hormones are vital to upkeep and regulation of resting and stress-related metabolic functions. </p>
<p>In emergency situations, glucocorticoid hormones are antagonistic to the insulin hormone, resulting in the mobilization of energy reserves via elevation of blood glucose and fatty acid release from fat tissues. This is very desirable in emergencies. </p>
<p>However, in non-emergencies, unneeded energy that can be released tends to increase output into the blood of cholesterol-carrying particles from the liver.</p>
<h4 id="overall_response_to_stress">Overall Response to Stress</h4>
<p><img src="07132020191448-stress-baselines.png" alt="" /></p>
<p>Shown are idealized representations of neuroendocrine and metabolic activity in the presence of stress. &#40; a &#41; depicts rapid baseline recovery as responsive and flexible &#40; b &#41; illustrates a slow recovery but an eventual delayed return to baseline &#40; c &#41; shows a weak reaction with an elevated baseline alongside a small response.</p>
<p>If a stress response is activated too regularly, feedback controls within the neuroendocrine system could reset one&#39;s baseline to a new elevated and potentially health-damaging level driven by environmental factors &#91;8&#93;, &#91;9&#93;</p>
<p><img src="07222020185508-hpa-brain.png" alt="" /></p>
<blockquote>
<p>Image from &#91;7&#93;</p>
</blockquote>
<p>How the brain, HPA axis, and immunesystem communicate with one another. The brain perceives cognitive stimuli. This perception can influence immune function via neuropeptides, the ANS, and the HPA axis. The immune system responds to non-cognitive stimuli. Examples of non-cognitive stimuli are infection and tumour growth. Cytokines and peptidehormones are secreted which affect the brain and neuroendocrine system. <em>RQ: ASD dysregulation of cytokines are directly impacted by the interference COVID19 thus further complicating response in the HPA axis.</em></p>
<h4 id="social_effects_on_well-being">Social Effects on Well-Being</h4>
<p><img src="07132020184157-well-being-impacts.png" alt="" /></p>
<p>Further, the balance of influences on health depends on geographical location and historical circumstances of the population in question.</p>
<p>This generalized diagram includes circumstances beyond individual control as well as personal situations. From the top left to the bottom right, there is a clear chain of influence between social structure and well-being.</p>
<p>Given the correct information, a similar pictogram could be made for each category of disease.</p>
<p>Current thoughts about everything which can impact overall well-being.</p>
<p>The social and cultural environment and organization of work are current factors in consideration in public policy. Psychological and biological factors are latent causes of disease. These tend to be the main focus of medical attention. In reality, these factors are intermediates on the pathway from social position to an individual&#39;s state of health. &#91;10&#93;</p>
<p>Social structure affects an individual via three primary influences:</p>
<ol>
<li><p>Material circumstances are related to health directly through one&#39;s social and work environment.</p>
</li>
<li><p>Material circumstances then impacts psychological factors and health-related behaviours.</p>
</li>
<li><p>Early life experiences, cultural, and genetic factors also exert influences on health.</p>
</li>
</ol>
<p>One example is a study of children at orphanages:</p>
<p>Under the same food conditions, children in the ‘Bienenhaus&#39; orphanage under the control of a stern Fraülein Schwarz, gained less weight and grew slowly. This opposite to children under the care of the affectionate Fraülein Grün at the ‘Vogelnest&#39; orphanage.  Schwarz replaced Grün during the study at ‘Vogelnest&#39; and growth rates were subsequently reversed. This controlled cross-over study provides evidence that adverse psychosocial circumstances in childhood can influence growth. &#91;11&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Social Determinants of Health</em>. <a href="https://jacobzelko.com/07112020161337-social-determinants-health">https://jacobzelko.com/07112020161337-social-determinants-health</a>. July 11 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; J. Siegrist, “Adverse health effects of high-effort/low-reward conditions.” J. Occup. Health Psychol., vol. 1, no. 1, p. 27, 1996.</p>
<p>&#91;2&#93; H. Bosma, M. G. Marmot, H. Hemingway, A. C. Nicholson, E. Brunner, and S. A. Stansfeld, “Low job control and risk of coronary heart disease in Whitehall II &#40;prospective cohort&#41; study,” Bmj, vol. 314, no. 7080, p. 558, 1997.</p>
<p>&#91;3&#93; P. Vallance and J. Collier, “Infection, inflammation, and infarction: Does acute endothelial dysfunction provide a link?” The Lancet, vol. 349, no. 9062, pp. 1391–1392, 1997.</p>
<p>&#91;4&#93; R. M. Sapolsky, “Endocrinology alfresco: Psychoendocrine studies of wild baboons,” in Recent progress in hormone research, Elsevier, 1993, pp. 437–468.</p>
<p>&#91;5&#93; T. G. Vrijkotte, L. J. Van Doornen, and E. J. De Geus, “Work stress and metabolic and hemostatic risk factors,” Psychosom. Med., vol. 61, no. 6, pp. 796–805, 1999.</p>
<p>&#91;6&#93; R. von Känel, P. J. Mills, C. Fainman, and J. E. Dimsdale, “Effects of psychological stress and psychiatric disorders on blood coagulation and fibrinolysis: A biobehavioral pathway to coronary artery disease?” Psychosom. Med., vol. 63, no. 4, pp. 531–544, 2001.</p>
<p>&#91;7&#93; R. Brown, R. E. Brown, and R. E. Brown, An introduction to neuroendocrinology. Cambridge University Press, 1994.</p>
<p>&#91;8&#93; A. Steptoe and M. Marmot, “The role of psychobiological pathways in socio-economic inequalities in cardiovascular disease risk,” Eur. Heart J., vol. 23, no. 1, pp. 13–25, 2002.</p>
<p>&#91;9&#93; A. Steptoe, P. J. Feldman, S. Kunz, N. Owen, G. Willemsen, and M. Marmot, “Stress responsivity and socioeconomic status. A mechanism for increased cardiovascular disease risk?” Eur. Heart J., vol. 23, no. 22, pp. 1757–1763, 2002.</p>
<p>&#91;10&#93; D. Blane, E. Brunner, and R. Wilkinson, “The evolution of public health policy,” Health Soc. Organ. Health Policy 21st Century, p. 1, 2002.</p>
<p>&#91;11&#93; E. Widdowson and R. McCance, “A review: New thoughts on growth,” Pediatr. Res., vol. 9, no. 3, pp. 154–156, 1975.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Sat, 11 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Hypothesis on Cytokine Dysregulation Worsened by COVID19 for People with ASD  ]]>
  </title>
  <link> https://jacobzelko.com/07102020174816-cytokine-asd-covid19/index.html </link>
  <guid> https://jacobzelko.com/07102020174816-cytokine-asd-covid19/index.html </guid>
  <description>
    <![CDATA[  Loose hypothesis on worsening of cytokine regulation via ASD and COVID19  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Hypothesis on Cytokine Dysregulation Worsened by COVID19 for People with ASD</h1>
<p><strong>Date:</strong> July 10 2020</p>
<p><strong>Summary:</strong> Loose hypothesis on worsening of cytokine regulation via ASD and COVID19</p>
<p><strong>Keywords:</strong> ##zettel #asd #autism ##hypothesis #health #mentalhealth #cytokine ##pandemic #covid19 #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<blockquote>
<p><strong>Note:</strong> Be careful about conflating correlation with causation.</p>
</blockquote>
<p>I have been closely examining the Hypothalamus Pituitary &#40;HPA&#41; axis and have seen how cytokines directly interact with it. &#91;1&#93; Therefore, since ASD has been correlated with cytokine dysregulation &#91;2&#93;, it can be reasonable to suspect that as coronavirae can also impact cytokine regulation &#91;3&#93;, ASD is a risk factor for COVID19 causing direct problems with the HPA axis leading to multiple downstream issues.</p>
<p>ASD has been correlated with abnormal immune function. This includes:</p>
<ol>
<li><p>Cytokine dysregulation</p>
</li>
<li><p>Inflammation</p>
</li>
<li><p>Presence of autoantibodies</p>
</li>
</ol>
<p>Studies show the presence of anti-brain immunoglobulins in ASD patients. &#91;4&#93; ASD status could also be directly correlated with patients’ cytokine and chemokine levels which cause organ inflammation &#91;2&#93;</p>
<p>There is a second phase resulting in a cytokine storm which particularly affects respiratory epithelium &#91;5&#93;. The storm activates cytokines IL-1-beta, IL-6 and TNFalfa. These activations aggravate respiratory symptoms. These cytokines cause damage to pulmonary microvasculature. It simultaneously affects apoptosis and chemotaxis resulting in decreases of epithelial barriers and alveolar edema <em>Back up references about cytokines</em></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Hypothesis on Cytokine Dysregulation Worsened by COVID19 for People with ASD</em>. <a href="https://jacobzelko.com/07102020174816-cytokine-asd-covid19">https://jacobzelko.com/07102020174816-cytokine-asd-covid19</a>. July 10 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; M. Marmot and R. Wilkinson, Social Determinants of Health, 2nd ed. Oxford University Press, 2006.</p>
<p>&#91;2&#93; A. M. Depino, “Peripheral and central inflammation in autism spectrum disorders,” Mol. Cell. Neurosci., vol. 53, pp. 69–76, 2013.</p>
<p>&#91;3&#93; S. N. J. Korsman, G. U. van Zyl, L. Nutt, M. I. Andersson, and W. Preiser, “Human coronaviruses,” in Virology, Elsevier, 2012, pp. 94–95. doi: 10.1016/B978-0-443-07367-0.00040-9.</p>
<p>&#91;4&#93; A. Meltzer and J. Van de Water, “The role of the immune system in autism spectrum disorder,” Neuropsychopharmacology, vol. 42, no. 1, pp. 284–298, 2017.</p>
<p>&#91;5&#93; Q. Ye, B. Wang, and J. Mao, “Cytokine storm in COVID-19 and treatment,” J. Infect., 2020.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Fri, 10 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  What is Digital Self-Harm  ]]>
  </title>
  <link> https://jacobzelko.com/07082020155623-digital-self-harm/index.html </link>
  <guid> https://jacobzelko.com/07082020155623-digital-self-harm/index.html </guid>
  <description>
    <![CDATA[  Exploration of the idea of Digital Self-Harm  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>What is Digital Self-Harm</h1>
<p><strong>Date:</strong> July 8 2020</p>
<p><strong>Summary:</strong> Exploration of the idea of Digital Self-Harm</p>
<p><strong>Keywords:</strong> ##zettel #harm #digital #non-suicidal #self #mentalhealth #illness #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Digital Self Harm is any online communication and activity that leads to, supports, or exacerbates non-suicidal yet intentional harm or impairment of an individual’s physical wellbeing. It includes consuming and generating online content. Digital self-harm occurs when a person’s behaviors are negatively influenced through his or her online activities in such a manner that these online activities lead to the infliction of non-suicidal direct or indirect physical harm to oneself. </p>
<p>Digital self-harm is believed to be growing at a rate that will not stop without check. &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What is Digital Self-Harm</em>. <a href="https://jacobzelko.com/07082020155623-digital-self-harm">https://jacobzelko.com/07082020155623-digital-self-harm</a>. July 8 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; C. Currie et al., “Social determinants of health and well-being among young people,” Health Behav. Sch.-Aged Child. HBSC Study Int. Rep. From, vol. 2010, p. 271, 2009.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Wed, 08 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Defining Digital Self-Harm  ]]>
  </title>
  <link> https://jacobzelko.com/06202020205907-digital-harm/index.html </link>
  <guid> https://jacobzelko.com/06202020205907-digital-harm/index.html </guid>
  <description>
    <![CDATA[  An overview on what is digital self harm  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Defining Digital Self-Harm</h1>
<p><strong>Date:</strong> July 8 2020</p>
<p><strong>Summary:</strong> An overview on what is digital self harm</p>
<p><strong>Keywords:</strong> ##bibliography #self #harm #online #digital #suicide #mentalhealth #archive</p>
<h1>Bibliography</h1>
<p>J. Pater and E. Mynatt, &quot;Defining Digital Self-Harm,&quot; in Proceedings of the 2017 ACM Conference on Computer Supported Cooperative Work and Social Computing, Portland Oregon USA, Feb. 2017, pp. 1501–1513, doi: 10.1145/2998181.2998224.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Examples of Digital Self-Harm</li><li>Problems with the Internet</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>This paper aims to define what digital self-harm is.</p>
<p>Digital self harm: online communication and activity that leads to, supports, or exacerbates non-suicidal yet intentional harm or impairment of an individual’s physical wellbeing.  It includes consuming and generating online content.  Digital self-harm occurs when a person’s behaviors are negatively influenced through his or her online activities in such a manner that these online activities lead to the infliction of non-suicidal direct or indirect physical harm to oneself. </p>
<p>Traditionally, eating disorder treatments generally include individual and family therapy or group therapy. Interpersonal and cultural forces that sustain self-harm activities are scrutinized.</p>
<p>As a field, CSCW and HCI health research appears to unconsciously emphasize the positive health benefits of technology &#91;1&#93;–&#91;3&#93;.  This unaddressed bias can have great consequences on platform design and policy and must be scrutinized.</p>
<p>Digital self-harm is believed to be growing at a rate that will not stop without check. &#91;4&#93;</p>
<h3 id="examples_of_digital_self-harm">Examples of Digital Self-Harm</h3>
<p>Pro-anorexic digital self-harm example:</p>
<blockquote>
<p>IF YOU WANT TO LOSE WEIGHT, GO ON A DIET FATTY.  ONE IS EITHER ANA/MIA OR NOT. IT IS A GIFT AND YOU CANNOT DECIDE TO HAVE AN EATING DISORDER. SO IF YOU ARE LOOKING FOR A WAY TO LOSE WEIGHT, S-S-S-S-SORRY JUNIOR&#33;&#33; MOVE ON, TRY JENNY CRAIG</p>
</blockquote>
<p>Two different ways the language around cutting is used:</p>
<ul>
<li><p>Normalizing behavior: attempts in legitimizing activities to deal with mental health issues</p>
</li>
<li><p>Pathologizing behavior: focuses on a bodily disgust with the behavior being wrong morally.</p>
</li>
</ul>
<h3 id="problems_with_the_internet">Problems with the Internet</h3>
<p>The internet creates an environment for reinforced strengthening of behavioral issues within an affected individual through encouragement of destructive behaviors. This sort of cybernetic reinforcement mechanism could lead to the fast and serious manifestations of underlying disease symptoms.</p>
<p>ED websites may have contagion-like effects on individuals investigating eating disorders prior to exhibiting any commitment to a disorder. &#91;5&#93; Regarding adolescents, a concern is a healthy desire for weight-loss could lead to unintended exposure of ED content.</p>
<p><em>QUESTION: I wonder if there is a corollary definition about unintentional digital self-harm? People who are not necessarily interested in self-harm, but come into it anyways.</em></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Defining Digital Self-Harm</em>. <a href="https://jacobzelko.com/06202020205907-digital-harm">https://jacobzelko.com/06202020205907-digital-harm</a>. July 8 2020.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; M. De Choudhury, M. R. Morris, and R. W. White, “Seeking and sharing health information online: Comparing search engines and social media,” in Proceedings of the SIGCHI conference on human factors in computing systems, 2014, pp. 1365–1376.</p>
<p>&#91;2&#93; J. Huh and W. Pratt, “Weaving clinical expertise in online health communities,” in Proceedings of the SIGCHI conference on human factors in computing systems, 2014, pp. 1355–1364.</p>
<p>&#91;3&#93; M. L. Jacobs, J. Clawson, and E. D. Mynatt, “My journey compass: A preliminary investigation of a mobile tool for cancer patients,” in Proceedings of the SIGCHI conference on human factors in computing systems, 2014, pp. 663–672.</p>
<p>&#91;4&#93; C. Currie et al., “Social determinants of health and well-being among young people,” Health Behav. Sch.-Aged Child. HBSC Study Int. Rep. From, vol. 2010, p. 271, 2009.</p>
<p>&#91;5&#93; D. L. Borzekowski, S. Schenk, J. L. Wilson, and R. Peebles, “E-Ana and e-Mia: A content analysis of pro–eating disorder web sites,” Am. J. Public Health, vol. 100, no. 8, pp. 1526–1534, 2010.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Wed, 08 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  What Is Self-Harm  ]]>
  </title>
  <link> https://jacobzelko.com/07082020161946-self-harm/index.html </link>
  <guid> https://jacobzelko.com/07082020161946-self-harm/index.html </guid>
  <description>
    <![CDATA[  Self-harm is a mental illness that results in causing pain or harm to oneself  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>What Is Self-Harm</h1>
<p><strong>Date:</strong> July 8 2020</p>
<p><strong>Summary:</strong> Self-harm is a mental illness that results in causing pain or harm to oneself</p>
<p><strong>Keywords:</strong> ##zettel #harm #self #suicide #mentalhealth #illness #hurting #pain ##summary #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>In 2014, WHO found that 20&#37; of children aged 15 confirmed having self-harmed within the last year. &#91;1&#93;</p>
<p>Self-harm is a mental illness that results in causing pain or harm to oneself. &#91;2&#93; Examples include restrictive and binge eating, cutting, hitting, scratching, burning, bleaching of an individual’s body, and other forms of self-mutilation. &#91;3&#93;</p>
<p>Self-harm generally pertains to non-life threatening actions individuals perform to negatively impact their health. This starts with actions like cutting and wrist slashing. &#91;4&#93; It can then lead to more severe acts of injuring human body tissue &#91;5&#93; and to <a href="https://jacobzelko.com/07122020174529-indirect-self-harm">indirect self-harming behavior</a> such as eating disorders &#91;6&#93;</p>
<p>There are many types of self-harming behavior such as:</p>
<ol>
<li><p><a href="https://jacobzelko.com/07122020174529-indirect-self-harm">Indirect Self-Harm</a></p>
</li>
<li><p><a href="https://jacobzelko.com/07122020185239-direct-self-harm">Direct Self-Harm</a></p>
</li>
<li><p><a href="https://jacobzelko.com/07082020155623-digital-self-harm">Digital Self-Harm</a></p>
</li>
</ol>
<p>Further complicating discrete categories is that not all people that self-harm are <a href="https://jacobzelko.com/07122020192840-suicide">suicidal</a>. &#91;7&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Is Self-Harm</em>. <a href="https://jacobzelko.com/07082020161946-self-harm">https://jacobzelko.com/07082020161946-self-harm</a>. July 8 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; C. Currie et al., “Social determinants of health and well-being among young people,” Health Behav. Sch.-Aged Child. HBSC Study Int. Rep. From, vol. 2010, p. 271, 2009.</p>
<p>&#91;2&#93; E. D. Klonsky, “The functions of deliberate self-injury: A review of the evidence,” Clin. Psychol. Rev., vol. 27, no. 2, pp. 226–239, 2007.</p>
<p>&#91;3&#93; M. K. Nock, “Self-injury,” Annu. Rev. Clin. Psychol., vol. 6, pp. 339–363, 2010.</p>
<p>&#91;4&#93; H. Graff and R. Mallin, “The syndrome of the wrist cutter,” Am. J. Psychiatry, vol. 124, no. 1, pp. 36–42, 1967.</p>
<p>&#91;5&#93; E. D. Klonsky, T. F. Oltmanns, and E. Turkheimer, “Deliberate self-harm in a nonclinical population: Prevalence and psychological correlates,” Am. J. Psychiatry, vol. 160, no. 8, pp. 1501–1508, 2003.</p>
<p>&#91;6&#93; C. Zlotnick, J. I. Mattia, and M. Zimmerman, “Clinical correlates of self-mutilation in a sample of general psychiatric patients,” J. Nerv. Ment. Dis., vol. 187, no. 5, pp. 296–301, 1999.</p>
<p>&#91;7&#93; J. Quigley, S. Rasmussen, and J. Mcalaney, “Normative misperceptions of suicidal and self-harming behaviours in an undergraduate student population,” Apr. 2014.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Wed, 08 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Information about Common Coronaviruses  ]]>
  </title>
  <link> https://jacobzelko.com/07062020233904-common-coronavirus/index.html </link>
  <guid> https://jacobzelko.com/07062020233904-common-coronavirus/index.html </guid>
  <description>
    <![CDATA[  Information about common coronavirae  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Information about Common Coronaviruses</h1>
<p><strong>Date:</strong> July 6 2020</p>
<p><strong>Summary:</strong> Information about common coronavirae</p>
<p><strong>Keywords:</strong> ##zettel #coronavirus #groups #common #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>History of Virus</li><li>Clinical Picture</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="history_of_virus">History of Virus</h3>
<p>Coronavirus disease was discovered in 1931 and the first human coronavirus, HCoV-229E, was isolated in 1965. &#91;1&#93; Since then, three main groups of coronavirus have been identified. The following grouping only accounts for types affecting humans &#91;2&#93;:</p>
<p>Group 1: HCoV-229E, HCoV-NL63 Group 2: HCoVOC43, HCoV-HKU1 Group 3: No human CoVs found</p>
<h3 id="clinical_picture">Clinical Picture</h3>
<p>All human coronaviruses have been reported worldwide. Infections occur throughout the year though most frequently in winter and spring. Larger outbreaks tend to occur every 2 - 4 years. &#91;2&#93; One is often infected with coronavirus early in life. Being infected with one strain does not yield protection against others. Immunity to the same virus does not last long. Reinfection can occur within a few months. &#91;1&#93;</p>
<p>Coronavirae are a common cause of the cold, causing about 2–10&#37; infections across the world. Infections in adults usually experience symptoms of rhinitis, sore throat and sometimes coughing. Asthma, chronic bronchitis, and chronic lung disease sufferers may experience a worsening of underlying illness from coronavirus. &#91;2&#93;</p>
<p>Coronavirus is acquired via air-borne particles &#40;fecal matter, droplets, etc.&#41; upon inhalation by an individual. The coronavirus enters the respiratory system. From there, it multiplies in the epithelial cells of the upper respiratory tract. It then spreads to the lower respiratory tract. &#91;2&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Information about Common Coronaviruses</em>. <a href="https://jacobzelko.com/07062020233904-common-coronavirus">https://jacobzelko.com/07062020233904-common-coronavirus</a>. July 6 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; J. S. M. Peiris, “Coronaviruses,” in Medical Microbiology, Elsevier, 2012, pp. 587–593. doi: 10.1016/B978-0-7020-4089-4.00072-X.</p>
<p>&#91;2&#93; S. N. J. Korsman, G. U. van Zyl, L. Nutt, M. I. Andersson, and W. Preiser, “Human coronaviruses,” in Virology, Elsevier, 2012, pp. 94–95. doi: 10.1016/B978-0-443-07367-0.00040-9.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 06 Jul 2020 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  SARS Coronavirae  ]]>
  </title>
  <link> https://jacobzelko.com/07062020234546-sars-coronavirus/index.html </link>
  <guid> https://jacobzelko.com/07062020234546-sars-coronavirus/index.html </guid>
  <description>
    <![CDATA[  Unique characteristics of the SARS Coronvirae family  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>SARS Coronavirae</h1>
<p><strong>Date:</strong> July 6 2020</p>
<p><strong>Summary:</strong> Unique characteristics of the SARS Coronvirae family</p>
<p><strong>Keywords:</strong> ##zettel #sars #coronavirus #different #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>SARS-CoV does not act like the other coronaviruses. It&#39;s classification is debated by researchers but some put it in group 2. &#91;1&#93;</p>
<p>Phase I of initial showing of SARS-CoV symptoms &#91;1&#93;:</p>
<ol>
<li><p>Fever &gt; 38°C</p>
</li>
<li><p>Rigors</p>
</li>
<li><p>Myalgia</p>
</li>
<li><p>Sore throat</p>
</li>
<li><p>Gastrointestinal symptoms</p>
</li>
</ol>
<p>Phase 2 &#40;3 - 7 days after initial symptoms&#41; Characterized by cough and shortness of breath. Hypoxia can develop in individuals and relative lymphopenia and neutropenia is possible. &#91;1&#93;</p>
<p>Some patients showed a biphasic course, with apparent recovery followed by worsening of the clinical condition. Mortality was highest in the elderly and lowest in the younger population, and co-existing illness worsened morbidity and mortality. Upwards of 10 - 20&#37; of cases needed ventilation. &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>SARS Coronavirae</em>. <a href="https://jacobzelko.com/07062020234546-sars-coronavirus">https://jacobzelko.com/07062020234546-sars-coronavirus</a>. July 6 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; S. N. J. Korsman, G. U. van Zyl, L. Nutt, M. I. Andersson, and W. Preiser, “Human coronaviruses,” in Virology, Elsevier, 2012, pp. 94–95. doi: 10.1016/B978-0-443-07367-0.00040-9.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 06 Jul 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Vector Algebra  ]]>
  </title>
  <link> https://jacobzelko.com/06172020134504-vector-algebra/index.html </link>
  <guid> https://jacobzelko.com/06172020134504-vector-algebra/index.html </guid>
  <description>
    <![CDATA[  The algebraic functions one can execute on a vector  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Vector Algebra</h1>
<p><strong>Date:</strong> June 17 2020</p>
<p><strong>Summary:</strong> The algebraic functions one can execute on a vector</p>
<p><strong>Keywords:</strong> ##zettel #vector ##mathematics #linearalgebra #algebra #multiplication #addition #scalar #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>There are a few <a href="https://jacobzelko.com/05132020135855-linear-vectors">definitions of a vector</a>. For this overview, I will use the definition that a vector is that which has the algebra of a vector space. The operations for vectors are straight-forward:</p>
<ol>
<li><p>Vector Addition</p>
</li>
</ol>
\[
v + w = \begin{bmatrix} v_{1}\\ v_{2} \end{bmatrix} + \begin{bmatrix} w_{1}\\ w_{2} \end{bmatrix} = \begin{bmatrix} v_{1} + w_{1}\\ v_{2} + w_{2} \end{bmatrix}
\]
<ol start="2">
<li><p>Scalar Multiplication</p>
</li>
</ol>
\[
2v = \left[
\begin{array}{c}
2v_{1} \\
2v_{2} \\
\end{array}
\right]
\]
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Vector Algebra</em>. <a href="https://jacobzelko.com/06172020134504-vector-algebra">https://jacobzelko.com/06172020134504-vector-algebra</a>. June 17 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Wed, 17 Jun 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  A Case Study in the Failure to Apply the Results of Psychological Research  ]]>
  </title>
  <link> https://jacobzelko.com/06082020234244-dempster-critique/index.html </link>
  <guid> https://jacobzelko.com/06082020234244-dempster-critique/index.html </guid>
  <description>
    <![CDATA[  A critique of possible reasons for why the Spacing Effect is not applied in American educational settings.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>A Case Study in the Failure to Apply the Results of Psychological Research</h1>
<p><strong>Date:</strong> June 8 2020</p>
<p><strong>Summary:</strong> A critique of possible reasons for why the Spacing Effect is not applied in American educational settings.</p>
<p><strong>Keywords:</strong> ##bibliography #spacing #effect #critique #education #system #archive</p>
<h1>Bibliography</h1>
<p>F. N. Dempster, &quot;A Case Study in the Failure to Apply the Results of Psychological Research,&quot; American Psychologist, p. 8, 1988.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Issues regarding the adoption of the spacing effect into classroom settings.</li><li>Miscellaneous Concepts</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="issues_regarding_the_adoption_of_the_spacing_effect_into_classroom_settings">Issues regarding the adoption of the spacing effect into classroom settings.</h3>
<ul>
<li><p>The spacing effect has not been studied in recent years</p>
</li>
<li><p>The spacing effect is still relatively new</p>
</li>
<li><p>The spacing effect does not have any thing to do with current issues educators face.</p>
</li>
<li><p>The spacing effect has yet to be shown well in school activities.</p>
</li>
<li><p>There are gaps in literature about the spacing effect</p>
</li>
<li><p>School-based studies do not show the spacing effect.</p>
</li>
<li><p>The spacing effect has not been well demonstrated in a classroom setting</p>
</li>
<li><p>Not enough is known about practical class implementation to warrant application of the spacing effect</p>
</li>
<li><p>The spacing effect is not well comprehended</p>
</li>
</ul>
<p>These are the most concerning issues concerning usage of the spacing effect:</p>
<ol>
<li><p>Ahistorical character of research on the spacing effect</p>
</li>
<li><p>Some failures to obtain the effect with school-like activities</p>
</li>
<li><p>Paucity of impressive classroom demonstrations of the phenomenon</p>
</li>
<li><p>Limited knowledge of classroom practice</p>
</li>
<li><p>Incomplete understanding of the psychological bases of the spacing effect</p>
</li>
</ol>
<p><strong>Probably the most legitimate barrier to utilization of the spacing effect in educational settings is the scarcity of in class demonstrations of its usage.</strong></p>
<p>However, these four issues are not considered as such strong impediments to the implementation of the spacing effect in classroom settings:</p>
<ol>
<li><p>Is not new and has been studied</p>
</li>
<li><p>Continues to receive recent documentation</p>
</li>
<li><p>Can assist in addressing educational issues</p>
</li>
<li><p>Is demonstrated to lend itself well to school-like activities</p>
</li>
</ol>
<h3 id="miscellaneous_concepts">Miscellaneous Concepts</h3>
<p><strong>Lag effects</strong> are believed to occur when performance on a memory task improves as the number of intervening items between successive presentations increases.</p>
<p><strong>Jost&#39;s Law:</strong> If two memories are equal in how well they were learned but at differing times, the older memory will gain more out of a review than the new one. &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>A Case Study in the Failure to Apply the Results of Psychological Research</em>. <a href="https://jacobzelko.com/06082020234244-dempster-critique">https://jacobzelko.com/06082020234244-dempster-critique</a>. June 8 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; J. A. McGeoch, “The psychology of human learning.” 1942.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 08 Jun 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Brief And Rare Mental &#39;Breaks&#39; Keep You Focused: Deactivation And Reactivation Of Task Goals Preempt Vigilance Decrements  ]]>
  </title>
  <link> https://jacobzelko.com/06052020031214-brief-breaks/index.html </link>
  <guid> https://jacobzelko.com/06052020031214-brief-breaks/index.html </guid>
  <description>
    <![CDATA[  How brief breaks can help you keep focused during long tasks  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Brief And Rare Mental &#39;Breaks&#39; Keep You Focused: Deactivation And Reactivation Of Task Goals Preempt Vigilance Decrements</h1>
<p><strong>Date:</strong> June 5 2020</p>
<p><strong>Summary:</strong> How brief breaks can help you keep focused during long tasks</p>
<p><strong>Keywords:</strong> ##bibliography #breaks #vigilance #tasks #decrement #archive</p>
<h1>Bibliography</h1>
<p>A. Ariga and A. Lleras, &quot;Brief and rare mental ‘breaks’ keep you focused: Deactivation and reactivation of task goals preempt vigilance decrements,&quot; Cognition, vol. 118, no. 3, pp. 439–443, Mar. 2011, doi: 10.1016/j.cognition.2010.12.007.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Study Methods</li><li>Concepts</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="study_methods">Study Methods</h3>
<p>84 students &#40;37 males, 47 female&#41; involved.</p>
<h3 id="concepts">Concepts</h3>
<p><strong>Mindlessness theory:</strong> vigilance decrement is due to gross inattention or mindlessness. During monotonous vigilance tasks, supervisory attentional systems lose their effectiveness and observers perform the task in a thoughtless manner. Essentially, zoning during a task such as driving a regular path to work or making a bed. &#91;1&#93;, &#91;2&#93;</p>
<p>Vigilance tasks often show a negative sloping curve as a function of time. &#91;3&#93;</p>
<p>Vigilance decrement does not concern depletion of attention resources. It is about a loss of control over our thoughts.</p>
<p>Heightened levels of vigilance can be maintained over prolonged periods of time with the use of infrequent, controlled breaks from a particular vigilance task. &#91;4&#93;</p>
<p>Ariga proposes that with respect to cognitive control, vigilance decrement may have difficulties due to goal habituation. Ariga argues thatgoals which draw on cognitive faculties should show effects similar to habituation.</p>
<p>Arriga argues that vigilance decrements ought be observed for any task that is performed continuously if goal habituation happens.  It should not depend necessarily on the extent to which the task can be routinized</p>
<p><strong>Task-Unrelated-Thoughts:</strong> when we subconsciously disengage from a task and start thinking about other related subjects</p>
<p>How Ariga believes vigilance decrement should be viewed. Cognitive control is also known as executive control. &#91;5&#93;, &#91;6&#93; Ariga&#39;s posits vigilance decrement is a failure of cognitive control. This is in contrast to the current thought that vigilance decrement is the inability to recover resources needed for retention as a function of time.</p>
<p>The defintion of habituation </p>
<p><strong>Habituation effect:</strong> the gradual diminishing of representation to sustained stimulation. Can occur even when being actively involved in tasks that require cognitive effort &#91;7&#93;, &#91;8&#93; and in tasks regarding meaning &#91;9&#93; This links back to how Ariga views vigilance decrement.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Brief And Rare Mental &#39;Breaks&#39; Keep You Focused: Deactivation And Reactivation Of Task Goals Preempt Vigilance Decrements</em>. <a href="https://jacobzelko.com/06052020031214-brief-breaks">https://jacobzelko.com/06052020031214-brief-breaks</a>. June 5 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; T. Manly, I. H. Robertson, M. Galloway, and K. Hawkins, “The absent mind:: Further investigations of sustained attention to response,” Neuropsychologia, vol. 37, no. 6, pp. 661–670, 1999.</p>
<p>&#91;2&#93; I. H. Robertson, T. Manly, J. Andrade, B. T. Baddeley, and J. Yiend, “Oops&#33;’: Performance correlates of everyday attentional failures in traumatic brain injured and normal subjects,” Neuropsychologia, vol. 35, no. 6, pp. 747–758, 1997.</p>
<p>&#91;3&#93; D. R. Davies and R. Parasuraman, The psychology of vigilance. Academic Pr, 1982.</p>
<p>&#91;4&#93; P. A. Bourke and J. Duncan, “Effect of template complexity on visual search and dual-task performance,” Psychol. Sci., vol. 16, no. 3, pp. 208–213, 2005.</p>
<p>&#91;5&#93; E. K. Miller and J. D. Cohen, “An integrative theory of prefrontal cortex function,” Annu. Rev. Neurosci., vol. 24, no. 1, pp. 167–202, 2001.</p>
<p>&#91;6&#93; M. I. Posner, C. R. Snyder, and R. Solso, “Attention and cognitive control,” Cogn. Psychol. Key Read., vol. 205, 2004.</p>
<p>&#91;7&#93; Y. S. Bonneh, A. Cooperman, and D. Sagi, “Motion-induced blindness in normal observers,” Nature, vol. 411, no. 6839, pp. 798–801, 2001.</p>
<p>&#91;8&#93; D. Troxler, “On the disappearance of given objects from our visual field,” Ophthalmol. Bibl., vol. 2, pp. 1–53, 1804.</p>
<p>&#91;9&#93; W. E. Lambert and L. A. Jakobovits, “Verbal satiation and changes in the intensity of meaning.” J. Exp. Psychol., vol. 60, no. 6, p. 376, 1960.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 05 Jun 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Householder Notation  ]]>
  </title>
  <link> https://jacobzelko.com/06032020153234-householder-notation/index.html </link>
  <guid> https://jacobzelko.com/06032020153234-householder-notation/index.html </guid>
  <description>
    <![CDATA[  Summary of how Householder notation works  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Householder Notation</h1>
<p><strong>Date:</strong> June 3 2020</p>
<p><strong>Summary:</strong> Summary of how Householder notation works</p>
<p><strong>Keywords:</strong> ##zettel #linear #algebra #matrix #vector #scalar #greek #householder #notation #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Examples</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Householder notation is very simple:</p>
<ol>
<li><p>Scalars are denoted as lowercase Greek letters: \(\alpha\). \(\beta\), \(\gamma\), ...</p>
</li>
<li><p>Vectors are represented as lowercase English letters: \(a\), \(b\), \(c\), ...</p>
</li>
<li><p>Matrices are denoted as uppercase English letters: \(A\), \(B\), \(C\), ...</p>
</li>
<li><p>Vector transposes are denoted with the apostrophe &#40; &#39; &#41;</p>
</li>
<li><p>Vector or matrix multiplication uses the star character &#40; * &#41;</p>
</li>
</ol>
<h3 id="examples">Examples</h3>
<ol>
<li><p>The inner product can be expressed as \(u' * v = \alpha\) &#40;i.e. a transposed vector times a vector yields a scalar&#41;</p>
</li>
<li><p>The outer product can be expressed similarly as \(u * v' = A\) &#40;i.e. a vector times a transposed vector yields a matrix&#41;</p>
</li>
<li><p>Quadratic/bilinear forms can be written as \(u' * A * v = \beta\) &#40;i.e. a transposed vector times a matrix times a vector yields a scalar&#41;</p>
</li>
</ol>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Householder Notation</em>. <a href="https://jacobzelko.com/06032020153234-householder-notation">https://jacobzelko.com/06032020153234-householder-notation</a>. June 3 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Wed, 03 Jun 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Spacing Effect  ]]>
  </title>
  <link> https://jacobzelko.com/05282020163507-spacing-effect/index.html </link>
  <guid> https://jacobzelko.com/05282020163507-spacing-effect/index.html </guid>
  <description>
    <![CDATA[  A summary of the spacing effect  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Spacing Effect</h1>
<p><strong>Date:</strong> May 28 2020</p>
<p><strong>Summary:</strong> A summary of the spacing effect</p>
<p><strong>Keywords:</strong> ##zettel #spacing #effect  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Associated terminology:<ol><li>Footnotes:</li></ol></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>The spacing effect accounts for the fact that learning is improved when studying is spread out over time. It was first discovered and described by Hermann Ebbinghaus during 1880 - 1885. &#91;1&#93; His findings were later accurately reproduced and documented by <em>Murre &amp; Dros</em>. &#91;2&#93; <a href="https://jacobzelko.com/05282020172154-replication-ebbinghaus">&#40;Click for results of that study here&#41;</a></p>
<p>The spacing effect has not been very well utilized in US-based education institutes despite its multitudinous benefits. &#91;3&#93; Cepeda et al. determined that in a memory based challenge, spaced based learning outperformed massed learning ~96&#37; of the time. &#91;4&#93; This coincides with the deficient processing view posited by Hintzman that stated how massed repetition leads to a lack of attention in later reviews. &#91;5&#93;</p>
<p>According to <em>Pyc and Rawson</em>, labored but correct recall while practicing improves memory. Spacing items of recall produce greater effort during retrieval and enables thorough conversion of the item to memory. <sup id="fnref:1">[1]</sup> &#91;6&#93; Semantic processing of information during repetitions assists in making that information more <a href="https://jacobzelko.com/03172020033742-antifragility">anti-fragile, to borrow from Nassim Taleb,</a> during reviews. This causes performance in later memory testing to be unaffected by changes in such things like the type of font used when presented information. <sup id="fnref:2">[2]</sup> &#91;7&#93; </p>
<p>However, a confounding factor in the idea of the spacing effect is the encoding variability theory. This theory states that one&#39;s performance on a memory test is related to overlaps amongst current contextualized material both during testing and while encoding. According to this view, spaced repetition typically entails some variability in presentation contexts. Yet, this results in a positive outcome being that there are then more retrieval cues associated with that material. &#91;8&#93;</p>
<p>However, there are concerns about the spacing effect that have impeded its overall adoption into educational formats. <em>Dempster</em> made a case examining potential rationales for the lack of adoption in a review of the current state of the spacing effect &#40;though the study is old over 30 years old, it still remains that education systems do not incorporate the spacing effect&#41;. &#91;3&#93; His biggest point of concern was the lack of studies that showed effective classroom utilization of the method.</p>
<p>Despite such misgivings, it is still a phenomenon that have given rise to many benefits and potential applications for at least personal education. Principle of which is in the form of<a href="https://jacobzelko.com/05252020183020-spaced-repetition-systems">spaced repetition systems.</a> These systems have determined the best spacing algorithms for a learner to use the spacing effect to assist in learning diverse educational material.</p>
<h3 id="associated_terminology">Associated terminology:</h3>
<p>Lag: the length of time between learning repetitions. &#91;9&#93;</p>
<h4 id="footnotes">Footnotes:</h4>
<p><sup id="fnref:1">[1]</sup> This is known as the retrieval effort hypothesis.</p>
<p><sup id="fnref:2">[2]</sup> Short-term perceptual priming is the mechanism that supports the spacing effects in cued-memory tasks when <em>unfamiliar</em> stimuli are used as targets. </p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Spacing Effect</em>. <a href="https://jacobzelko.com/05282020163507-spacing-effect">https://jacobzelko.com/05282020163507-spacing-effect</a>. May 28 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; H. Ebbinghaus, “Ueber das gedächtnis,” 1885.</p>
<p>&#91;2&#93; J. M. J. Murre and J. Dros, “Replication and Analysis of Ebbinghaus’ Forgetting Curve,” PLoS ONE, vol. 10, no. 7, p. e0120644, Jul. 2015, doi: 10.1371/journal.pone.0120644.</p>
<p>&#91;3&#93; F. N. Dempster, “A Case Study in the Failure to Apply the Results of Psychological Research,” Am. Psychol., p. 8, 1988.</p>
<p>&#91;4&#93; N. J. Cepeda, H. Pashler, E. Vul, J. T. Wixted, and D. Rohrer, “Distributed practice in verbal recall tasks: A review and quantitative synthesis.” Psychol. Bull., vol. 132, no. 3, p. 354, 2006.</p>
<p>&#91;5&#93; D. L. Hintzman, “Theoretical implications of the spacing effect.” 1974.</p>
<p>&#91;6&#93; M. A. Pyc and K. A. Rawson, “Testing the retrieval effort hypothesis: Does greater difficulty correctly recalling information lead to higher levels of memory?” J. Mem. Lang., vol. 60, no. 4, pp. 437–447, 2009.</p>
<p>&#91;7&#93; N. Mammarella, R. Russo, and S. Avons, “Spacing effects in cued-memory tasks for unfamiliar faces and nonwords,” Mem. Cognit., vol. 30, no. 8, pp. 1238–1251, 2002.</p>
<p>&#91;8&#93; S. M. Cormier, Basic processes of learning, cognition, and motivation. Psychology Press, 2014.</p>
<p>&#91;9&#93; M. J. Kahana and M. W. Howard, “Spacing and lag effects in free recall of pure lists,” Psychon. Bull. Rev., vol. 12, no. 1, pp. 159–164, 2005.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Thu, 28 May 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Replication and Analysis of Ebbinghaus’ Forgetting Curve  ]]>
  </title>
  <link> https://jacobzelko.com/05282020172154-replication-ebbinghaus/index.html </link>
  <guid> https://jacobzelko.com/05282020172154-replication-ebbinghaus/index.html </guid>
  <description>
    <![CDATA[  This is a replication study on the discovery of the forgetting curve as reported by Hermann Ebbinghaus in 1880.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Replication and Analysis of Ebbinghaus’ Forgetting Curve</h1>
<p><strong>Date:</strong> May 28 2020</p>
<p><strong>Summary:</strong> This is a replication study on the discovery of the forgetting curve as reported by Hermann Ebbinghaus in 1880.</p>
<p><strong>Keywords:</strong> ##bibliography #archive</p>
<h1>Bibliography</h1>
<p>J. M. J. Murre and J. Dros, &quot;Replication and Analysis of Ebbinghaus’ Forgetting Curve,&quot; PLoS ONE, vol. 10, no. 7, p. e0120644, Jul. 2015, doi: 10.1371/journal.pone.0120644.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Study Set-up</li><li>Useful Concepts</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="study_set-up">Study Set-up</h3>
<ol>
<li><p>Due to time constraints, 10 replications per time interval was used, instead of the 12 to 45 by Ebbinghaus. This means the variance in our data is larger than in Ebbinghaus&#39; especially at the longest time intervals.</p>
</li>
<li><p>Were not able to experiment at fixed times during the day.</p>
</li>
<li><p>Our stimulus material conformed to the phonotactics of the Dutch language</p>
</li>
<li><p>Our subject was younger than H. Ebbinghaus</p>
</li>
<li><p>We do not know exactly when he learned and relearned the lists for the longer intervals. Makes it impossible to calculate the number of interfering lists between learning and relearning. nearly certain that our schedule differed from his</p>
</li>
</ol>
<p>A practice phase was used to prevent general learning effects due to growing experience with the task and materials.</p>
<p>The number of correct syllables at first reproduction of a row at relearning. Did not have to be the correct location where the word was learned.</p>
<p>The main value monitored was amount of repetitions required to correctly reproduce syllables in a row sequence.</p>
<p>Learning material consisted of 70 lists. Each list consisted of 104 nonsense syllables, which in turn consisted of 8 &#39;rows&#39; of 13 syllables.</p>
<p>Lists were printed on paper in black ink with font &quot;Calibri&quot; at size 11. There were eight rows per page. Each row was arranged into a column format for ease of study. Rows not being studied were covered by sheets of paper.</p>
<p>Syllables consisted of 3 or 4 lower-case letters. Its structure was a lower-case consonant-vowel-consonant.</p>
<p>Syllables with meanings in other languages spoken by the subject, such as English and German, were not excluded.</p>
<p>These are the key points that differentiate their study from Ebbinghaus&#39;s original study. Furthermore, listed is how the study was conducted. </p>
<h3 id="useful_concepts">Useful Concepts</h3>
<p>Savings is time minimized on an upcoming learning trial after having had prior exposure to that learning material. Hermann Ebbinghaus came up with this idea&#33; An example of this concept is: imagine one repeated a list 25 times to prefectly memorize the list. After a day of rest, instead of 25 repititions to relearn the list, one only needs 20. In this sense, a saving of 20&#37; took place.</p>
<p>Single-subject studies are normal in memory psychology. Especially common concerning autobiographical memory based on one&#39;s own memories &#91;1&#93;–&#91;3&#93;. A benefit is that no intersubject variability exists. However, these studies need hundreds of trials to decrease variance based on confounding stimuli.</p>
<p>Ebbinghaus used nonsense syllables as material to learn for his experiments. He did this because he thought that legitimate material could be complicated by his pre-existing memories leading to a higher variance in his experimental data. &#91;4&#93;  Many scientists in experimental psychology now use this same approach.</p>
<p>Studies suggest that the first night&#39;s sleep post-learning has an important impact on memory that may continue to adapt several days after. A temporary increase in the forgetting curve where subjects score better than after learning in the days following sleep can be seen. However, it is not experienced if they skipped the night of sleep after learning &#91;5&#93;</p>
<p>How sleep can impact and benefit the learning of new material. The forgetting curve is not completely smooth and jumps at the 1 day retention interval. One possible explanation for this jump is based on the effects of sleep on memory. However, that explanation has not been proven for this study type.</p>
<p><strong>Implicit memory:</strong> where an individual may not be consciously aware they still possess traces of memory representations but one cannot actively recall or recognize these representations. These old traces do show savings when relearning that corresponding material. <em>RQ: This intuitively makes sense to me after much study and practice in languages and other domains. I wonder how long implicit memory lasts?</em></p>
<p><strong>Memory Chain Model:</strong> posits memory passes through several neural processes - &quot;stores&quot; - as it transitions from short-term to long-term memory. &#91;6&#93; It can be used to model the forgetting curve and &quot;savings&quot;. Store 1, the hippocampus, acts as a temporary storage which decreases exponentially in intensity. Store 2, the neocortex, is for long-term memory where it declines at a much slower rate. Store 1 gradually shifts its contents to Store 2. The decay rates in Store 1 and Store 2 are given by \(\alpha_{1}\) and \(\alpha_{2}\), respectively. The initial strength of the memory traces in Store 1 are given by \(\mu_{1}\) and the rate of consolidating the contents of Store 1 to Store 2 is given by μ2. Lesioning Store 1, will produce a retrograde amnesia gradient that can be modeled by the Memory Chain Model simultaneously with the forgetting gradient of healthy controls. &#91;7&#93; The Memory Chain Model &#40;MCM&#41; equation for type of savings studied here is given by \(Q(t) = \mu_{1}e^{a_{1}t} + \frac{\mu_{1}\mu_{2}(e^{-a_{2}t} - e^{-a_{1}t})}{a_{1} -a_{2}}\)The MCM function has the same number of parameters but they are arranged differently. The proof that this equation is a mathematical formalization of the memory consolidation process can be found elsewhere. &#91;7&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Replication and Analysis of Ebbinghaus’ Forgetting Curve</em>. <a href="https://jacobzelko.com/05282020172154-replication-ebbinghaus">https://jacobzelko.com/05282020172154-replication-ebbinghaus</a>. May 28 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; W. A. Wagenaar, “My memory: A study of autobiographical memory over six years,” Cognit. Psychol., vol. 18, no. 2, pp. 225–252, 1986.</p>
<p>&#91;2&#93; M. Linton, “Memory for real-world events,” Explor. Cogn., pp. 376–404, 1975.</p>
<p>&#91;3&#93; J. R. Sehulster, “Content and temporal structure of autobiographical knowledge: Remembering twenty-five seasons at the Metropolitan Opera,” Mem. Cognit., vol. 17, no. 5, pp. 590–606, 1989.</p>
<p>&#91;4&#93; H. Ebbinghaus, “Ueber das gedächtnis,” 1885.</p>
<p>&#91;5&#93; R. Stickgold, L. James, and J. A. Hobson, “Visual discrimination learning requires sleep after training,” Nat. Neurosci., vol. 3, no. 12, pp. 1237–1238, 2000.</p>
<p>&#91;6&#93; J. M. Murre, M. Meeter, and A. G. Chessa, “Modeling amnesia: Connectionist and mathematical approaches,” Stat. Process Models Neurosci. Aging, pp. 119–162, 2007.</p>
<p>&#91;7&#93; J. M. Murre, A. G. Chessa, and M. Meeter, “A mathematical model of forgetting and amnesia,” Front. Psychol., vol. 4, p. 76, 2013.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 28 May 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Making Things Hard On Yourself, But In A Good Way: Creating Desirable Difficulties To Enhance Learning  ]]>
  </title>
  <link> https://jacobzelko.com/05282020164557-desirable-difficulties/index.html </link>
  <guid> https://jacobzelko.com/05282020164557-desirable-difficulties/index.html </guid>
  <description>
    <![CDATA[  Practical discussion about how to introduce desirable learning difficulties into your learning patterns.  ]]>
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<h1>Making Things Hard On Yourself, But In A Good Way: Creating Desirable Difficulties To Enhance Learning</h1>
<p><strong>Date:</strong> May 28 2020</p>
<p><strong>Summary:</strong> Practical discussion about how to introduce desirable learning difficulties into your learning patterns.</p>
<p><strong>Keywords:</strong> ##bibliography ##finish #performance #storage #strength #difficulty #desirable #learning #archive</p>
<h1>Bibliography</h1>
<p>E. L. Bjork, R. A. Bjork, and others, &quot;Making things hard on yourself, but in a good way: Creating desirable difficulties to enhance learning,&quot; Psychology and the real world: Essays illustrating fundamental contributions to society, vol. 2, no. 59–68, 2011.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Performance is a quantifiable metric that is observed in teaching or practice.</p>
<p>Performance is not a valid metric to determine if learning is occuring.</p>
<p>Storage strength defines how interassociated a representation of memory is to relevant experiences &#40;such as knowledge or skills&#41;.</p>
<p>Learning is the idea of creating permanent changes in one&#39;s understanding or knowledge regarding a particular subject.</p>
<p>Factors that quickly improve retrieval strength are different from those that improve storage strength. If learners mistake retrieval strength as storage strength, a learner could mistakenly be led to believe that situations which improve retrieval strength could improve storage strength.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Making Things Hard On Yourself, But In A Good Way: Creating Desirable Difficulties To Enhance Learning</em>. <a href="https://jacobzelko.com/05282020164557-desirable-difficulties">https://jacobzelko.com/05282020164557-desirable-difficulties</a>. May 28 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 28 May 2020 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Making Things Hard On Yourself, But In A Good Way: Creating Desirable Difficulties To Enhance Learning  ]]>
  </title>
  <link> https://jacobzelko.com/05252020211350-hard-on-self/index.html </link>
  <guid> https://jacobzelko.com/05252020211350-hard-on-self/index.html </guid>
  <description>
    <![CDATA[  How increasing difficulties in learning can increase better long-term learning. Examples included.  ]]>
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<h1>Making Things Hard On Yourself, But In A Good Way: Creating Desirable Difficulties To Enhance Learning</h1>
<p><strong>Date:</strong> May 25 2020</p>
<p><strong>Summary:</strong> How increasing difficulties in learning can increase better long-term learning. Examples included.</p>
<p><strong>Keywords:</strong> ##bibliography ##finish #performance #learning #forgetting #retrieval #strength #storage #generation #effect #archive</p>
<h1>Bibliography</h1>
<p>E. L. Bjork, R. A. Bjork, and others, &quot;Making things hard on yourself, but in a good way: Creating desirable difficulties to enhance learning,&quot; Psychology and the real world: Essays illustrating fundamental contributions to society, vol. 2, no. 59 - 68, 2011.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Difficulties which can encourage learning: </p>
<ol>
<li><p>Varied learning conditions as opposed to constant and predictable ones.</p>
</li>
<li><p>Interleaving instruction on separate topics together.</p>
</li>
<li><p>Spacing study sessions on a given topic.</p>
</li>
<li><p>Using tests as study events. &#91;1&#93;</p>
</li>
</ol>
<p>Learning how to learn is the ultimate survival tool. </p>
<p>Rather do not fret over inputs but rather, output. Consolidate reading material from memory. Get with others to drill one another with questions. Activites that test your ability to generate explications yields more robust learning experiences.</p>
<p>Memory does not function like a video recorder. Reviewing the same material ad nauseam is not effective for memory. Learning involves attaching novel information to what is known by oneself. </p>
<p>Generating an explanation about a topic rather than just being given a solution can be more effective than the spacing effect. This is called the generation effect.</p>
<p>Learning difficulties which are desirable trigger encoding and retrieval processes that support storage strength. If the learner is unable to successfully handle presented difficulties, they become impediments rather than helps to learning.</p>
<p>Retrieval strength explains the ease in accessing a representation of a specific memory in the brain. It is signficantly affected by factors such as cues and recency of exposure to a material related to that representation.</p>
<p>Studying the same material in two different rooms rather the same room leads to increased recall of that material. &#91;2&#93;</p>
<p>Interleaved practice produces higher quality prolonged retention and promotes skill transferability. In comparison to blocked practice and other sorts of mass practicing. &#91;3&#93;</p>
<p>Blocked practice is deceptive; it is not the best form of learning though it can appear to be so. &#91;3&#93; </p>
<p>It is suggested that interleaving material forces one to differentiate between different topics. When pressured, this can heighten one&#39;s perception about differentiators. It leads to better embedding of abstractions that foster retention and transfer. &#91;3&#93;</p>
<p>Participants in a motor skills test received 18 patterned trials via a pinball-like machine set-up. Participants were presented with randomly determined patterns &#40;interleaved&#41; or individual patterns that were practiced consecutively &#40;blocked&#41; on the machine. Blocked participants quickly improved versus interleaved participants. After a 10 day break, participants retested under blocked or interleaved conditions. Presented random conditions, the original interleaved participants performed superior to the blocked participants. Blocked participants appeared to have learned nothing. Presented blocked conditions, results were approximately the same but the minimal differences favored interleaving. &#91;3&#93;</p>
<p>Testing is seen as a means of quantitative assessment but not for learning purposes. This is in contradiction to the fact that testing can be highly a highly beneficial tool for learning rather than a measurement of learning taking place. </p>
<p>8 and 12 year olds practiced tossing beanbags at a target on the floor while having their vision blocked at each throw. Half of each age group practiced throwing at a fixed distance target. The rest threw at targets of varying distances. After sufficient practices and a break, all children were tested under fixed target conditions for their age group. Children who practiced at variable distances performed better than fixed target participants. Introducing variation outmatched benefits of fixed distance practice. &#91;4&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Making Things Hard On Yourself, But In A Good Way: Creating Desirable Difficulties To Enhance Learning</em>. <a href="https://jacobzelko.com/05252020211350-hard-on-self">https://jacobzelko.com/05252020211350-hard-on-self</a>. May 25 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; R. A. Bjork, “Memory and metamemory considerations in the,” Metacognition Knowing Knowing, vol. 185, 1994.</p>
<p>&#91;2&#93; S. M. Smith, A. Glenberg, and R. A. Bjork, “Environmental context and human memory,” Memory &amp; Cognition, vol. 6, no. 4, pp. 342–353, Jul. 1978, doi: 10.3758/BF03197465.</p>
<p>&#91;3&#93; J. B. Shea and R. L. Morgan, “Contextual interference effects on the acquisition, retention, and transfer of a motor skill.” J. Exp. Psychol. &#91;Hum. Learn.&#93;, vol. 5, no. 2, p. 179, 1979.</p>
<p>&#91;4&#93; R. Kerr and B. Booth, “Specific and varied practice of motor skill,” Percept. Mot. Skills, vol. 46, no. 2, pp. 395–401, 1978.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 25 May 2020 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  Spaced Repetition Systems  ]]>
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  <link> https://jacobzelko.com/05252020183020-spaced-repetition-systems/index.html </link>
  <guid> https://jacobzelko.com/05252020183020-spaced-repetition-systems/index.html </guid>
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    <![CDATA[  What are Spaced Repetition Systems and what is available?  ]]>
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<h1>Spaced Repetition Systems</h1>
<p><strong>Date:</strong> May 25 2020</p>
<p><strong>Summary:</strong> What are Spaced Repetition Systems and what is available?</p>
<p><strong>Keywords:</strong> ##zettel #spaced #repetition #system #spacing #effect ##learning #software  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Software Implementations</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>There are multiple algorithms available used for effectively implementing the <a href="https://jacobzelko.com/05282020163507-spacing-effect">spacing effect</a>. The earliest algorithm comes from the original discoverer of the spacing effect, Hermann Ebbinghaus. The algorithm <a href="https://jacobzelko.com/05282020172154-replication-ebbinghaus">has been replicated</a> and scrutinized examined multiple times. &#91;1&#93;–&#91;3&#93; Spaced repetition systems are based around proper implementations of such algorithms.</p>
<p>Before the advent of computers, it was very difficult to implement such a system. The best system to take advantage of this effect was the <a href="https://jacobzelko.com/05102020220941-leitner-system">Leitner System which used paper note cards</a> to assist with remembering information. However, this was still a somewhat fragile system and difficult to manage.</p>
<p>With computers, there have been several pieces of software made to automate and keep track of repetitions <em>for a learner</em>. A majority of these systems directly adapted the Leitner System from the analog to the digital world. Each software generally has proprietary algorithms that supposedly maximize the spacing effect but are directly inspired by the original work done by Ebbinghaus.</p>
<p>Whether analog or digital, key features of these systems are as follows:</p>
<ol>
<li><p>Uses an algorithm implementation of the spacing effect for a user.</p>
</li>
<li><p>Each piece of information is spaced automatically per a user&#39;s perceived difficulty in either remembering or processing that piece of information on a repetition.</p>
</li>
<li><p>Pieces of information are generally presented in a &quot;flashcard&quot; format and are stored in &quot;decks&quot;.</p>
</li>
</ol>
<h3 id="software_implementations">Software Implementations</h3>
<p>There are many pieces of software that utilize spaced repetition. Provided is a table listing some of the most popular ones:</p>
<table><tr><th align="right">Software</th><th align="right">Description</th><th align="right">Reference</th></tr><tr><td align="right">Anki</td><td align="right">Open source flashcard based learning software.</td><td align="right">@AnkiPowerfulIntelligent</td></tr><tr><td align="right">Duolingo</td><td align="right">Popular language learning platform.</td><td align="right">@LearnLanguageFree</td></tr><tr><td align="right">Memrise</td><td align="right">Flashcard based language learning app.</td><td align="right">@zotero-1378</td></tr><tr><td align="right">Quizlet</td><td align="right">Multi-faceted learning platform.</td><td align="right">@Quizlet</td></tr><tr><td align="right">Supermemo</td><td align="right">Software for spacing and incremental reading.</td><td align="right">@LearnFastForget</td></tr></table>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Spaced Repetition Systems</em>. <a href="https://jacobzelko.com/05252020183020-spaced-repetition-systems">https://jacobzelko.com/05252020183020-spaced-repetition-systems</a>. May 25 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; J. M. J. Murre and J. Dros, “Replication and Analysis of Ebbinghaus’ Forgetting Curve,” PLoS ONE, vol. 10, no. 7, p. e0120644, Jul. 2015, doi: 10.1371/journal.pone.0120644.</p>
<p>&#91;2&#93; H. Ebbinghaus, “Ueber das gedächtnis,” 1885.</p>
<p>&#91;3&#93; E. L. Bjork, R. A. Bjork, et al., “Making things hard on yourself, but in a good way: Creating desirable difficulties to enhance learning,” Psychol. Real World Essays Illus. Fundam. Contrib. Soc., vol. 2, no. 59–68, 2011.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 25 May 2020 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  Hebbian Theory  ]]>
  </title>
  <link> https://jacobzelko.com/05252020222041-hebbian-theory/index.html </link>
  <guid> https://jacobzelko.com/05252020222041-hebbian-theory/index.html </guid>
  <description>
    <![CDATA[  An overview on what Hebbian Theory actually is  ]]>
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<h1>Hebbian Theory</h1>
<p><strong>Date:</strong> May 25 2020</p>
<p><strong>Summary:</strong> An overview on what Hebbian Theory actually is</p>
<p><strong>Keywords:</strong> ##zettel ##finish #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Hebbian Learning discusses the simultaneous activation of cells leading to increased synaptic strengthening between those cells. &#40;Also known as Associative Learning&#41;</p>
<p>Hebbian theory discusses the way neurons may associate or connect themselves together to become engrams.</p>
<p>Mirror neurons present an interesting question regarding how do people have neurons that are both affected when executing an action and listening to or witnessing someone else execute a related action.</p>
<p>Hebbian theory would predict that as individuals perform particular actions, they will see, hear, and feel themselves perform that action. Synapses connecting the neurons that respond to external stimuli and those triggering the action should be potentiated. The reason for this is that the sensory neurons will consistently overlap in time with those of the motor neurons that caused the action thus triggering activity in the re-afferent sensory neurons. &#91;1&#93; A. Lahav, E. Saltzman, and G. Schlaug, &quot;Action representation of sound: audiomotor recognition network while listening to newly acquired actions,&quot; Journal of Neuroscience, vol. 27, no. 2, pp. 308–314, 2007. &#91;2&#93; M. D. Giudice, V. Manera, and C. Keysers, &quot;Programmed to learn? The ontogeny of mirror neurons,&quot; Developmental science, vol. 12, no. 2, pp. 350–363, 2009.</p>
<p>An engram is where, in the brain, a pathway to a thought or memory is repeatedly stimulated causing strong interassociations. The brain automatically adjusts to turn on elements that are related to the thought or memory and tune out unrelated elements.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Hebbian Theory</em>. <a href="https://jacobzelko.com/05252020222041-hebbian-theory">https://jacobzelko.com/05252020222041-hebbian-theory</a>. May 25 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 25 May 2020 00:00:00 +0000</pubDate>  
  
  
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    <atom:name>Jacob Zelko</atom:name>
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  <title>
    <![CDATA[  Underestimating Digital Media Harm  ]]>
  </title>
  <link> https://jacobzelko.com/05252020221842-digital-media/index.html </link>
  <guid> https://jacobzelko.com/05252020221842-digital-media/index.html </guid>
  <description>
    <![CDATA[  Twenge&#39;s critique of modern day assessment of the negative impacts of social media on adolescents.  ]]>
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<h1>Underestimating Digital Media Harm</h1>
<p><strong>Date:</strong> May 25 2020</p>
<p><strong>Summary:</strong> Twenge&#39;s critique of modern day assessment of the negative impacts of social media on adolescents.</p>
<p><strong>Keywords:</strong> ##bibliography #harm #depression #social #media #factors #mental #illness ##health #archive</p>
<h1>Bibliography</h1>
<p>J. M. Twenge, J. Haidt, T. E. Joiner, and W. K. Campbell, &quot;Underestimating digital media harm,&quot; Nat Hum Behav, vol. 4, no. 4, pp. 346–348, Apr. 2020, doi: 10.1038/s41562-020-0839-4.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>The consideration of only monotonic effects were accounted. Relationships between digital media use and health are generally non-monotonic. Associations often follow a J-shaped curve. The first issue raised by Jean Twenge against &quot;The association between adolescent well-being and digital technology use&quot; by Orben and Przybylski. This is nicknamed the Goldilocks hypothesis which was posited by Przybylski himself. &#91;0&#93; J. M. Twenge, J. Haidt, T. E. Joiner, and W. K. Campbell, &quot;Underestimating digital media harm,&quot; Nat Hum Behav, vol. 4, no. 4, pp. 346–348, Apr. 2020, doi: 10.1038/s41562-020-0839-4. &#91;1&#93; A. K. Przybylski and N. Weinstein, &quot;A large-scale test of the goldilocks hypothesis: quantifying the relations between digital-screen use and the mental well-being of adolescents,&quot; Psychological Science, vol. 28, no. 2, pp. 204–215, 2017.</p>
<p>The global adolescent mental health crisis started around 2012 and greatly affects girls more so than boys &#91;5&#93;. As TV is now commonplace and TV watching amongst adolescents has declined after 2012 &#91;6&#93;, TV watching does not suggest an adequate explanation for the sudden increase in mental health disorders. The second issue raised by Jean Twenge against &quot;The association between adolescent well-being and digital technology use&quot; by Orben and Przybylski &#91;0&#93; J. M. Twenge, J. Haidt, T. E. Joiner, and W. K. Campbell, &quot;Underestimating digital media harm,&quot; Nat Hum Behav, vol. 4, no. 4, pp. 346–348, Apr. 2020, doi: 10.1038/s41562-020-0839-4. &#91;5&#93; S. McManus et al., &quot;Prevalence of non-suicidal self-harm and service contact in England, 2000–14: repeated cross-sectional surveys of the general population,&quot; The lancet psychiatry, vol. 6, no. 7, pp. 573–581, 2019. &#91;6&#93; J. M. Twenge, G. N. Martin, and B. H. Spitzberg, &quot;Trends in US Adolescents’ media use, 1976–2016: The rise of digital media, the decline of TV, and the &#40;near&#41; demise of print.,&quot; Psychology of Popular Media Culture, vol. 8, no. 4, p. 329, 2019.</p>
<p>The Monitoring the Future dataset examines digital media usage via two ways. </p>
<ol>
<li><p>A minimal variance scale with labels that range from &quot;never&quot; to &quot;almost every day.&quot;</p>
</li>
<li><p>A sufficiently varied count of weekly hours spent on digital media.</p>
</li>
</ol>
<p>However, Orben and Przybylski only included low-variance items. The fourth issue raised by Jean Twenge against &quot;The association between adolescent well-being and digital technology use&quot; by Orben and Przybylski. &#91;0&#93; J. M. Twenge, J. Haidt, T. E. Joiner, and W. K. Campbell, &quot;Underestimating digital media harm,&quot; Nat Hum Behav, vol. 4, no. 4, pp. 346–348, Apr. 2020, doi: 10.1038/s41562-020-0839-4. &#91;1&#93; J. E. Schulenberg, L. D. Johnston, P. M. O’Malley, J. G. Bachman, R. A. Miech, and M. E. Patrick, &quot;Monitoring the Future national survey results on drug use, 1975-2016: Volume II, College students and adults ages 19-55,&quot; 2017.</p>
<p>Including controls that could in fact be mediators. The fifth issue raised by Jean Twenge against &quot;The association between adolescent well-being and digital technology use&quot; by Orben and Przybylski. Orben and Przybylski control for factors such as negative attitudes towards school, time spent with parents, parent distress and closeness to parents, which could be caused by heavy social media use. &#91;0&#93; J. M. Twenge, J. Haidt, T. E. Joiner, and W. K. Campbell, &quot;Underestimating digital media harm,&quot; Nat Hum Behav, vol. 4, no. 4, pp. 346–348, Apr. 2020, doi: 10.1038/s41562-020-0839-4.</p>
<p>Using \(r^{2}\) for effect size has multiple problems. The sixth issue raised by Jean Twenge against &quot;The association between adolescent well-being and digital technology use&quot; by Orben and Przybylski. &#91;0&#93; J. M. Twenge, J. Haidt, T. E. Joiner, and W. K. Campbell, &quot;Underestimating digital media harm,&quot; Nat Hum Behav, vol. 4, no. 4, pp. 346–348, Apr. 2020, doi: 10.1038/s41562-020-0839-4. &#91;1&#93; C. J. Ferguson, &quot;An effect size primer: a guide for clinicians and researchers.,&quot; 2016. &#91;2&#93; D. C. Funder and D. J. Ozer, &quot;Evaluating effect size in psychological research: Sense and nonsense,&quot; Advances in Methods and Practices in Psychological Science, vol. 2, no. 2, pp. 156–168, 2019.</p>
<p>Heavy use of social media is regularly correlated with negative mental health outcomes of varying severity. This relationship disproportionately affects girls. Given that there is no plausible alternative explanation for this association, associations with a variety of adverse mental health conditions in girls should not be dismissed. Adverse events being rising rates of anxiety, depression, self-harm and suicide &#91;0&#93; J. M. Twenge, J. Haidt, T. E. Joiner, and W. K. Campbell, &quot;Underestimating digital media harm,&quot; Nat Hum Behav, vol. 4, no. 4, pp. 346–348, Apr. 2020, doi: 10.1038/s41562-020-0839-4. &#91;1&#93; S. McManus et al., &quot;Prevalence of non-suicidal self-harm and service contact in England, 2000–14: repeated cross-sectional surveys of the general population,&quot; The lancet psychiatry, vol. 6, no. 7, pp. 573–581, &#91;1&#93; &#91;2&#93; J. M. Twenge, &quot;Why increases in adolescent depression may be linked to the technological environment,&quot; Current opinion in psychology, vol. 32, pp. 89–94, 2020.2019.</p>
<p>Effect sizes include many individual items. These are lower in internal reliability than multiple-item scales and thus produce lower effect sizes. Scales with more items count more heavily in the analysis because they have more items. &#91;1&#93; L. J. Cronbach and P. E. Meehl, &quot;Construct validity in psychological tests.,&quot; Psychological bulletin, vol. 52, no. 4, p. 281, 1955. The third issue raised by Jean Twenge against &quot;The association between adolescent well-being and digital technology use&quot; by Orben and Przybylski</p>
<p>Mediators are a possible reason behind an effect. They should not be controlled. This is from an email conversation with Jean Twenge about this issue. For example, it is plausible that excessive social media use causes teens to spend less time with their parents. Thus this variable should not be a covariate, as it might partially explain why the correlation between social media use and depression occurs in the first place. </p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Underestimating Digital Media Harm</em>. <a href="https://jacobzelko.com/05252020221842-digital-media">https://jacobzelko.com/05252020221842-digital-media</a>. May 25 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Mon, 25 May 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Finding a Line Which Contains Two Points  ]]>
  </title>
  <link> https://jacobzelko.com/05202020224416-line-two-points/index.html </link>
  <guid> https://jacobzelko.com/05202020224416-line-two-points/index.html </guid>
  <description>
    <![CDATA[  An explanation on how to find a line that fits to two points  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Finding a Line Which Contains Two Points</h1>
<p><strong>Date:</strong> May 20 2020</p>
<p><strong>Summary:</strong> An explanation on how to find a line that fits to two points</p>
<p><strong>Keywords:</strong> ##zettel #algebra #line #point #slope #formula #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Algorithm</li><li>Example</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="algorithm">Algorithm</h3>
<p>Let \(p_{1} = (x_{1}, y_{1})\), \(p_{2} = (x_{2}, y_{2})\), \(p = (x_{p}, y_{p})\) where \(p_{1}\) and \(p_{2}\) are two points of interest and \(p\) is either \(p_{1}\) or \(p_{2}\). The algorithm for determining the line that contains points \(p_{1}\) and \(p_{2}\) utilizes the Point-Slope Formula:</p>
\[
y_{2} - y_{1} = m(x_{2} - x_{1})
\]
<p>Can be rewritten such that</p>
\[
m = \frac{ y_{2} - y_{1}}{x_{2} - x_{1}}
\]
<p>To define the slope of the line in question. To generalize this to a generic solution, one reevaluates for the point slope formula using \(y\) and \(x\) as general terms:</p>
\[
y - y_{p} = m(x - x_{p})
\]
<p>To produce the final generic equation, reorganizing yields:</p>
\[
y(x) = \frac{x \cdot \left( y_{2} - y_{1} \right)}{x_{2} - x_{1}} - \frac{x_{p} \cdot \left( y_{2} - y_{1} \right)}{x_{2} - x_{1}} + y_{p}
\]
<h3 id="example">Example</h3>
<pre><code class="language-julia">using Plots
gr&#40;&#41;# Utilizing an implicit return from the generic function
y&#40;x, x_1, y_1, x_2, y_2&#41; &#61; x .* &#40;y_2 - y_1&#41; ./ &#40;x_2 - x_1&#41; .- x_1 .* &#40;y_2 - y_1&#41; ./ &#40;x_2 - x_1&#41; .&#43; y_1input &#61; -5:5
output &#61; y&#40;input, 2, -1, 0, 3&#41;plot&#40;input,
     output, 
     framestyle&#61;:zerolines,
     label&#61;&quot;Fitted Line&quot;,
     title&#61;&quot;Line Fitting Two Points&quot;,
     xlim&#61;&#40;-5, 5&#41;,
     ylim&#61;&#40;-5, 5&#41;
     &#41;
scatter&#33;&#40;&#40;2, -1&#41;, label&#61;&quot;Point 1&quot;, marker&#61;5&#41;
scatter&#33;&#40;&#40;0, 3&#41;, label&#61;&quot;Point 2&quot;, marker&#61;5&#41;</code></pre>
<p><img src="052520202121.png" alt="output image" /></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Finding a Line Which Contains Two Points</em>. <a href="https://jacobzelko.com/05202020224416-line-two-points">https://jacobzelko.com/05202020224416-line-two-points</a>. May 20 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Wed, 20 May 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Implicit Returns  ]]>
  </title>
  <link> https://jacobzelko.com/05192020171152-implicit-return/index.html </link>
  <guid> https://jacobzelko.com/05192020171152-implicit-return/index.html </guid>
  <description>
    <![CDATA[  How Julia performs implicit returns  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Implicit Returns</h1>
<p><strong>Date:</strong> May 19 2020</p>
<p><strong>Summary:</strong> How Julia performs implicit returns</p>
<p><strong>Keywords:</strong> ##zettel #julialang #programming #implicit #return #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<pre><code class="language-julia">function is_leap_year&#40;year&#41;
    if &#40;year &#37; 4 &#61;&#61; 0&#41; &amp;&amp; &#33;&#40;year &#37; 100 &#61;&#61; 0&#41; || &#40;year &#37; 400 &#61;&#61; 0&#41;
        return true
    else
        return false
    end</code></pre>
<p>is equivalent to the expression</p>
<pre><code class="language-julia">julia&gt; is_leap_year&#40;year&#41; &#61; &#40;year &#37; 4 &#61;&#61; 0&#41; &amp;&amp; &#33;&#40;year &#37; 100 &#61;&#61; 0&#41; || &#40;year &#37; 400 &#61;&#61; 0&#41;julia&gt; is_leap_year&#40;1995&#41;
false</code></pre>
<p>This works because Julia performs implicit returns in their functions by returning the result of the function&#39;s last evaluated expression.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Implicit Returns</em>. <a href="https://jacobzelko.com/05192020171152-implicit-return">https://jacobzelko.com/05192020171152-implicit-return</a>. May 19 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 19 May 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Predictors and Factors Affecting Smoking Cessation  ]]>
  </title>
  <link> https://jacobzelko.com/05182020005014-smoking-recovery-indicators/index.html </link>
  <guid> https://jacobzelko.com/05182020005014-smoking-recovery-indicators/index.html </guid>
  <description>
    <![CDATA[  Common positive and negative factors facilitating smoking cessation.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Predictors and Factors Affecting Smoking Cessation</h1>
<p><strong>Date:</strong> May 18 2020</p>
<p><strong>Summary:</strong> Common positive and negative factors facilitating smoking cessation.</p>
<p><strong>Keywords:</strong> ##zettel #predictors #factors #positive #negative #drinking #support #stress  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Positive predictors facilitating quitting over 2 years were &#91;1&#93;:</p>
<ul>
<li><p>Being married</p>
</li>
<li><p>Higher education</p>
</li>
<li><p>Higher social support</p>
</li>
<li><p>Using a set quit date</p>
</li>
<li><p>Quitting previously for over 90 days</p>
</li>
</ul>
<p>Negative factors associated with quitting &#91;1&#93;:</p>
<ul>
<li><p>Binge drinking</p>
</li>
<li><p>Higher nicotine dependency</p>
</li>
<li><p>Greater tension &#40;stress&#41;</p>
</li>
<li><p>Smoking-related medical conditions</p>
</li>
<li><p>Previous use of two or more quitting programs</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Predictors and Factors Affecting Smoking Cessation</em>. <a href="https://jacobzelko.com/05182020005014-smoking-recovery-indicators">https://jacobzelko.com/05182020005014-smoking-recovery-indicators</a>. May 18 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; L. E. Carlson, P. Taenzer, J. Koopmans, and B. D. Bultz, “Eight-year follow-up of a community-based large group behavioral smoking cessation intervention,” Addictive Behaviors, vol. 25, no. 5, pp. 725–741, Sep. 2000, doi: 10.1016/S0306-4603&#40;00&#41;00081-2.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Mon, 18 May 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Eight-Year Follow-Up Of A Community-Based Large Group Behavioral Smoking Cessation Intervention  ]]>
  </title>
  <link> https://jacobzelko.com/05172020232612-smoking-cessation/index.html </link>
  <guid> https://jacobzelko.com/05172020232612-smoking-cessation/index.html </guid>
  <description>
    <![CDATA[  Study involving effective cognitive behavioral-based interventions for increasing smoking cessation in large group settings.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Eight-Year Follow-Up Of A Community-Based Large Group Behavioral Smoking Cessation Intervention</h1>
<p><strong>Date:</strong> May 17 2020</p>
<p><strong>Summary:</strong> Study involving effective cognitive behavioral-based interventions for increasing smoking cessation in large group settings.</p>
<p><strong>Keywords:</strong> ##bibliography #smoking #cessation #jar #addiction #health #cognitive #behavioral #support #group #large #archive</p>
<h1>Bibliography</h1>
<p>L. E. Carlson, P. Taenzer, J. Koopmans, and B. D. Bultz, &quot;Eight-year follow-up of a community-based large group behavioral smoking cessation intervention,&quot; Addictive Behaviors, vol. 25, no. 5, pp. 725–741, Sep. 2000, doi: 10.1016/S0306-4603&#40;00&#41;00081-2.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Methodology</li><li>Conclusion</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>In this particular study, a cohort of 971 individuals were involved in smoking cessation sessions hosted at smoking cessation clinics between 1986 and 1990. The intervention developed at these sessions for a participant involved attending eight 90 minute group sessions over a period of 4 months. The biggest of the groups reached 110 attendees. 3 months after a group quit date, 39.3&#37; of cohort self-reported as non-smoking. Thereafter, 32.1&#37; and 26.0&#37; of the cohort at 6 and 12 months respectively reported non-smoking. Finally, at an 8 year check-in, 33.9&#37; of the cohort were reached. 47.7&#37; reported not currently smoking &#40;16.2 of total cohort&#41;. &#91;pg. 725&#93;</p>
<p>33.9&#37; and 66.1&#37; of the cohort were male and female respectively. Participants averaged an age of 39.9. &#91;pg. 729&#93; Interestingly, it was found that the motivation for the cohort came from oneself with 81.2&#37; saying they wanted to quit. 3.4&#37; said they were motivated by others and 14.5&#37; said they were motivated by themselves and others. &#91;pg. 730&#93; The participants who were not successful in quitting smoking for 3 months reported not being prepared to quit. &#91;pg. 737&#93; The success rates that were reported were reasonably not significantly biased to positive or negative outcomes due to a loose balance between those who started with both <a href="https://jacobzelko.com/05182020005014-smoking-recovery-indicators">great and poor quitting conditions</a> &#40;linked to related quitting factors&#41;. &#91;pg. 732&#93; Race was not accounted for in this study.</p>
<h3 id="methodology">Methodology</h3>
<p>Each session included topics such as education about the negative consequences of smoking, how to self monitor, and strategies for modifying behavior to disassociate smoking from pleasure. &quot;Butt jars&quot; were used to create aversive sensations to smoking via association with pictures of cancerous organs. In contrast, non-smoking behavior was rewarded in the idea of a &quot;money jar&quot;. The money jar contains the money a participant would have used for smoking and is instead set aside to be used to finance enjoyable activity. &#91;pg. 728&#93;</p>
<h3 id="conclusion">Conclusion</h3>
<p>The part of the study program most helpful to participants was the supportive nature of the large group setting. Despite large group sizes, individuals thought they were supported very well. The support and the accepting, non-judgemental atmosphere provided in groups promoted cessation. This study illustrated that a Cognitive Behavioral grounding in smoking cessation can produce success with large group participant. &#91;pg. 738&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Eight-Year Follow-Up Of A Community-Based Large Group Behavioral Smoking Cessation Intervention</em>. <a href="https://jacobzelko.com/05172020232612-smoking-cessation">https://jacobzelko.com/05172020232612-smoking-cessation</a>. May 17 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sun, 17 May 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Linear Combination  ]]>
  </title>
  <link> https://jacobzelko.com/05132020134039-linear-combination/index.html </link>
  <guid> https://jacobzelko.com/05132020134039-linear-combination/index.html </guid>
  <description>
    <![CDATA[  A loose overview on linear combination and it geometric relationship  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Linear Combination</h1>
<p><strong>Date:</strong> May 13 2020</p>
<p><strong>Summary:</strong> A loose overview on linear combination and it geometric relationship</p>
<p><strong>Keywords:</strong> ##zettel #linearalgebra #vectors ##mathematics #geometry #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>How Does Linear Combination Operate?</li><li>Reading Vector \(u\) in the Cartesian Coordinate Plane</li><li><strong>Examples</strong><ol><li><strong>Simple Linear Combination Example</strong></li></ol></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="how_does_linear_combination_operate">How Does Linear Combination Operate?</h3>
<p>Let \(v\) and \(w\) be any two vectors and let \(c\) and \(d\) represent any real numbers. Multiplying \(v\) and \(w\) by \(c\) and \(d\) respectively yields \(cv\) and \(dw\).</p>
<p>Adding \(cv\) and \(dw\) together is the idea of a linear combination.</p>
\[
cv + dw = c\begin{bmatrix} v_{1}\\ v_{2} \end{bmatrix} + d\begin{bmatrix} w_{1}\\ w_{2} \end{bmatrix} = \begin{bmatrix} cv_{1} + dw_{1}\\ cv_{2} + dw_{2} \end{bmatrix}
\]
<h3 id="reading_vector_u_in_the_cartesian_coordinate_plane">Reading Vector \(u\) in the Cartesian Coordinate Plane</h3>
<p>In the case of </p>
\[
c\left[
\begin{array}{c}
1 \\
1 \\
\end{array}
\right]
+
d\left[
\begin{array}{c}
2 \\
3 \\
\end{array}
\right]
\]
<p>The entire xy plane is filled. They produce every \(\left[ \begin{array}{c} x \\
y \\
\end{array} \right]\)</p>
<p>In three element column vectors, a <strong>plane</strong> is filled in the <em>xyz</em> space:</p>
\[
c\left[
\begin{array}{c}
1 \\
1 \\
1 \\
\end{array}
\right]
+
d\left[
\begin{array}{c}
2 \\
3 \\
4 \\
\end{array}
\right]
\]
<h3 id="examples"><strong>Examples</strong></h3>
<h4 id="simple_linear_combination_example"><strong>Simple Linear Combination Example</strong></h4>
<p>Let \(v = \begin{bmatrix} 1\\ 1 \end{bmatrix}\), \(w = \begin{bmatrix} 2\\ 3 \end{bmatrix}\), and \(c = d = 1\)</p>
\[
cv + dw = 1\begin{bmatrix} 1\\ 1 \end{bmatrix} + 1\begin{bmatrix} 2\\ 3 \end{bmatrix} = \begin{bmatrix} 3\\ 4 \end{bmatrix}
\]
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Linear Combination</em>. <a href="https://jacobzelko.com/05132020134039-linear-combination">https://jacobzelko.com/05132020134039-linear-combination</a>. May 13 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Wed, 13 May 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Vectors  ]]>
  </title>
  <link> https://jacobzelko.com/05132020135855-linear-vectors/index.html </link>
  <guid> https://jacobzelko.com/05132020135855-linear-vectors/index.html </guid>
  <description>
    <![CDATA[  Simple write up on column vectors  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Vectors</h1>
<p><strong>Date:</strong> May 13 2020</p>
<p><strong>Summary:</strong> Simple write up on column vectors</p>
<p><strong>Keywords:</strong> ##zettel #column #vectors #linear #algebra ##mathematics  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>There exist two definitions for vectors:</p>
<ol>
<li><p>A vector is a column of a matrix.</p>
</li>
<li><p>A vector is that which has the algebra of a vector space.</p>
</li>
</ol>
<p>This can be summarized by saying: not all vectors which have the algebra of a vector space are columns of matrices.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Vectors</em>. <a href="https://jacobzelko.com/05132020135855-linear-vectors">https://jacobzelko.com/05132020135855-linear-vectors</a>. May 13 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Wed, 13 May 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Leitner System  ]]>
  </title>
  <link> https://jacobzelko.com/05102020220941-leitner-system/index.html </link>
  <guid> https://jacobzelko.com/05102020220941-leitner-system/index.html </guid>
  <description>
    <![CDATA[  A brief overview of how the Leitner system works  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Leitner System</h1>
<p><strong>Date:</strong> May 10 2020</p>
<p><strong>Summary:</strong> A brief overview of how the Leitner system works</p>
<p><strong>Keywords:</strong> ##zettel #learning #repetition #flashcards #spaced  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>The Leitner system uses flashcards to implement a spaced repetition learning system. It was created by German science journalist Sebastian Leitner in the 1970s.</p>
<p><img src="1589148887796.png" alt="" /></p>
<blockquote>
<p>Successfully recalled cards are moved to the next group. Unsuccessfully recalled cards go back to the first box.</p>
</blockquote>
<p>Using the Leitner system, learners create flashcards with discrete facts on them. These cards are grouped based on how well a learner knows the information on the card. They are arranged via the following method:</p>
<ul>
<li><p>If a card is successfully recalled, the card is put into the next group.</p>
</li>
<li><p>If a card is not successfully recalled it is sent to the first group.</p>
</li>
</ul>
<p>The cards are kept in a box and are partitioned by spacings in the box. The size of each participation determined when cards were to be reviewed. For Leitner&#39;s implementation, this consisted of 1, 2, 5, 8, and 14cm partition sizes. Reviews only took place when a partition is filled to proper sizing.</p>
<p>In Leitner&#39;s original method, published in his book So lernt man Lerne &#40;How to learn to learn&#41;, the schedule of repetition was governed by the size of the partitions in the learning box.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Leitner System</em>. <a href="https://jacobzelko.com/05102020220941-leitner-system">https://jacobzelko.com/05102020220941-leitner-system</a>. May 10 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Sun, 10 May 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Incremental Reading  ]]>
  </title>
  <link> https://jacobzelko.com/05092020053727-incremental-reading/index.html </link>
  <guid> https://jacobzelko.com/05092020053727-incremental-reading/index.html </guid>
  <description>
    <![CDATA[  An overview of the process of incremental reading  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Incremental Reading</h1>
<p><strong>Date:</strong> May 9 2020</p>
<p><strong>Summary:</strong> An overview of the process of incremental reading</p>
<p><strong>Keywords:</strong> ##zettel #incremental #reading ##knowledge ##technique #generation #interleaving #breaks #brief #attention #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li><strong>Footnotes:</strong></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Incremental reading follows the general format. &#91;1&#93;</p>
<ol>
<li><p>Identify written pieces of interest.</p>
</li>
<li><p>Prioritize the pieces according to personal urgency.</p>
</li>
<li><p>Allocate a comfortable reading time duration per piece with a timed, short break in-between. <sup id="fnref:1">[1]</sup></p>
</li>
<li><p>While reading each piece, annotate material that is of interest or difficult to process.</p>
</li>
<li><p>Transfer annotations from each piece to an index card representation &#40;actual or digital&#41;.</p>
</li>
<li><p>Pause reading and review collected annotations using a <a href="https://jacobzelko.com/05252020183020-spaced-repetition-systems">spaced repetition system</a>.</p>
</li>
<li><p>Once annotations have been thoroughly revised and reviewed, repeat from step 2 until finished with pieces over the next several days.</p>
</li>
</ol>
<p>Incremental reading helps with improving focus and promotes learning while moving uniformly to finish reading. <sup id="fnref:2">[2]</sup> &#91;2&#93;, &#91;3&#93; Ingesting raw annotations into a spaced repetition system enables one to process them without being overwhelmed. On each repetition of a particular annotation, rewriting or modifying that information is crucial in cementing understanding. <sup id="fnref:3">[3]</sup> After finishing revisions and reviews, this process is repeated until done with reading the pieces.</p>
<h3 id="footnotes"><strong>Footnotes:</strong></h3>
<p><sup id="fnref:1">[1]</sup> Ariga and Lleras demonstrated that attention on a particular task can be extended via brief and uncommon respites of a controlled nature. <a href="&#91;Click for more details&#93;&#40;https://jacobzelko.com/06052020031214-brief-breaks&#41;">4</a></p>
<p><sup id="fnref:2">[2]</sup> It is suggested that interleaving material forces one to differentiate between different topics. When pressured under practice, this can heighten one&#39;s perception about differentiators. It leads to better embedding of concept abstractions that foster retention and transfer. &#91;2&#93;, <a href="&#91;Click for more details&#93;&#40;https://jacobzelko.com/05252020211350-hard-on-self&#41;">3</a></p>
<p><sup id="fnref:3">[3]</sup> Generating an explanation about a topic rather than just being given a solution can be more effective than the spacing effect. This is called the generation effect. <a href="&#91;Click for more details&#93;&#40;https://jacobzelko.com/05252020211350-hard-on-self&#41;">2</a></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Incremental Reading</em>. <a href="https://jacobzelko.com/05092020053727-incremental-reading">https://jacobzelko.com/05092020053727-incremental-reading</a>. May 9 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; Master How To Learn, “Demonstration: My Workflow of Incremental Reading,” Dec. 09, 2018. https://www.masterhowtolearn.com/2018-12-09-demonstration-my-workflow-of-incremental-reading/ &#40;accessed May 19, 2020&#41;.</p>
<p>&#91;2&#93; E. L. Bjork, R. A. Bjork, et al., “Making things hard on yourself, but in a good way: Creating desirable difficulties to enhance learning,” Psychol. Real World Essays Illus. Fundam. Contrib. Soc., vol. 2, no. 59–68, 2011.</p>
<p>&#91;3&#93; J. B. Shea and R. L. Morgan, “Contextual interference effects on the acquisition, retention, and transfer of a motor skill.” J. Exp. Psychol. &#91;Hum. Learn.&#93;, vol. 5, no. 2, p. 179, 1979.</p>
<p>&#91;4&#93; A. Ariga and A. Lleras, “Brief and rare mental ‘breaks’ keep you focused: Deactivation and reactivation of task goals preempt vigilance decrements,” Cognition, vol. 118, no. 3, pp. 439–443, Mar. 2011, doi: 10.1016/j.cognition.2010.12.007.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Sat, 09 May 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Niklas Luhmann&#39;s Card Index: The Fabrication of Serendipity  ]]>
  </title>
  <link> https://jacobzelko.com/05032020155207-fabrication-serendipity/index.html </link>
  <guid> https://jacobzelko.com/05032020155207-fabrication-serendipity/index.html </guid>
  <description>
    <![CDATA[  A more in-depth examination of the Zettelkasten method  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Niklas Luhmann&#39;s Card Index: The Fabrication of Serendipity</h1>
<p><strong>Date:</strong> May 3 2020</p>
<p><strong>Summary:</strong> A more in-depth examination of the Zettelkasten method</p>
<p><strong>Keywords:</strong> ##zettel #database #computer #niklasluhmann #zettelkasten  #archive</p>
<h1>Bibliography</h1>
<p>J. F. K. Schmidt, Niklas Luhmann&#39;s Card Index: The Fabrication of Serendipity, Sociologica, vol. Vol 12, pp. 53-60 Pages, Jul. 2018, doi: 10.6092/ISSN.1971-8853/8350.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<blockquote>
<p>&quot;As early as in the 1950s to 1960s, Luhmann simulated a modern computer-based database system &#91;...&#93;.&quot; &#40;pg. 59&#41;</p>
</blockquote>
<p>I actually think that the Zettelkasten method by Luhmann is distinctly different from a computer database. The reason being, is that this is far more overlapping and far reaching than a discrete system like a simple computer database. One could argue that relations could be made analogous to relational databases but here, the relations are far more abstract than they are in the traditional relational database. If anything, Luhmann&#39;s Zettelkasten is more similar to a graph-type system - such as a knowledge graph - than a database </p>
<blockquote>
<p>&quot;Luhmann&#39;s card index allows the production of new and often unexpected knowledge by relating concepts and thoughts that do not have much in common at first sight &#91;...&#93; &#91;I&#93;t makes &#91;...&#93; serendipity possible in a systemically and theoretically informed way.&quot; &#40;pg. 54&#41;</p>
</blockquote>
<p>The power of the Zettelkasten comes from these accidental connections. Very similar to how one may spread out pieces of paper on a table and make a new connection, so does this method simulate it in very much the same way.</p>
<p>Luhmann employed ambiguity and indecisiveness into the development of the Zettelkasten approach whenever he added a new piece of information to the Zettelkasten. Rather than assigning the piece of information to one discrete category, he enabled that piece of info to naturally attach itself to other pieces of information as <a href="https://jacobzelko.com/03092020022908-education-spectrum">knowledge falls across a spectrum.</a> &#40;pg. 56&#41;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Niklas Luhmann&#39;s Card Index: The Fabrication of Serendipity</em>. <a href="https://jacobzelko.com/05032020155207-fabrication-serendipity">https://jacobzelko.com/05032020155207-fabrication-serendipity</a>. May 3 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Sun, 03 May 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  The Room as an Extension of the Mind  ]]>
  </title>
  <link> https://jacobzelko.com/05092020053840-room-mind/index.html </link>
  <guid> https://jacobzelko.com/05092020053840-room-mind/index.html </guid>
  <description>
    <![CDATA[  Working thought on how a person&#39;s environment can function as an extension of one&#39;s mental processes. Could possibly lead to decrease in cognitive loading.  ]]>
  </description>  
  
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    <![CDATA[  
<h1>The Room as an Extension of the Mind</h1>
<p><strong>Date:</strong> April 28 2020</p>
<p><strong>Summary:</strong> Working thought on how a person&#39;s environment can function as an extension of one&#39;s mental processes. Could possibly lead to decrease in cognitive loading.</p>
<p><strong>Keywords:</strong> ##zettel #memory #mind #mental #smoking #jar #mess #corning #mapping #cognitive #load #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>I have often heard it said that a room or home reflects a person&#39;s state of mind. Ideally, a well-organized mind should map to a nicely ordered room and the logical contrapositive of that statement follows suit. However, what is not immediately understood is the notion of a room or house being an extension of that person&#39;s mental processes.</p>
<p>For example, a smoker who is attempting to quit smoking often is taught many different sorts of ways to handle cessation. Two such ideas are the notions of a <a href="https://jacobzelko.com/05172020232612-smoking-cessation">&quot;butt jar&quot; and a &quot;savings jar&quot;.</a> These are two actual jars that quitters set-up in their home to reinforce the idea of quitting. The &quot;butt jar&quot; contains the butts of cigarettes one smokes with graphic imagery of cancerous organs to associate adverse events with smoking more clearly. The other &quot;savings jar&quot; is a reward system where quitters put the money they would have spent on smoking into the jar. They then can use this money for whatever pleasurable or fun activity they please.</p>
<p>Here, the jars work as a physical extension of the mind. Furthermore, I once had a professor named Debra Dudick at Corning Community College. Her desk was an absolute mess covered with stacks of papers and books everywhere. A little nook in the corner of her desk was carved out for her computer. Yet, she knew where every single file, book, or reference that she needed was despite the mess. And as the chair of the Engineering Department, she needed speed in her work.</p>
<p>Somehow, her mind made disparate associations across her desk that actually helped her find what she was looking for. One could reason that due to the extra labor it took to sift through materials, her mind automatically made connections between object and place to facilitate easier finding. This is in opposition to the idea of having everything clean. Instead, the desk became an external mapping of her mind that was only activated when needed.</p>
<p>The question remains if this is a viable means to extending human thought and to decrease cognitive load. The human mind is not neatly organized, rather, much like an unkempt desk, its connections are far and wide across the brain. So why do we attempt to force our environment in this way?</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>The Room as an Extension of the Mind</em>. <a href="https://jacobzelko.com/05092020053840-room-mind">https://jacobzelko.com/05092020053840-room-mind</a>. April 28 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 28 Apr 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Sleep as an Act of Faith  ]]>
  </title>
  <link> https://jacobzelko.com/04282020175356-sleep-act/index.html </link>
  <guid> https://jacobzelko.com/04282020175356-sleep-act/index.html </guid>
  <description>
    <![CDATA[  Choosing to sleep is an act of faith  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Sleep as an Act of Faith</h1>
<p><strong>Date:</strong> April 28 2020</p>
<p><strong>Summary:</strong> Choosing to sleep is an act of faith</p>
<p><strong>Keywords:</strong> ##zettel #sleep #faith #psalm5 #archive #blog</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Psalm 5 Scripture</li><li>Exegesis</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="psalm_5_scripture">Psalm 5 Scripture</h3>
<pre><code class="language-julia">Listen to my words, Lord, 
consider my lament. 
Hear my cry for help,
my King and my God,
for to you I pray.In the morning, Lord, you hear my voice;
in the morning I lay my requests before you and wait expectantly.&#91;...&#93;But let all who take refuge in you be glad;
    let them ever sing for joy.
Spread your protection over them,
    that those who love your name may rejoice in you.Surely, Lord, you bless the righteous;
you surround them with your favor as with a shield.                                        - Psalms 5:1-3, 11-12</code></pre>
<h3 id="exegesis">Exegesis</h3>
<p>One of the key things to note about this passage is when the Psalmist chooses to lay his requests before God – the morning. If you wake up and the very first thing you do is cry and lament before God, then this illustrates a point of extreme stress. The object of stress in this Psalm is enough to haunt the writer&#39;s every waking moment. It causes enough concern for the Psalmist to wait on God to answer the writer.</p>
<p>Yet, what may or may not be implied from this is that the Psalmist still chooses rest and/or sleep. In verses 11 - 12, the Psalmist knows that God protects and blesses those who love Him and he chooses to have faith and trust in that knowledge to rest and rejoice. </p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Sleep as an Act of Faith</em>. <a href="https://jacobzelko.com/04282020175356-sleep-act">https://jacobzelko.com/04282020175356-sleep-act</a>. April 28 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 28 Apr 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Median Filtering  ]]>
  </title>
  <link> https://jacobzelko.com/04252020024813-median-filtering/index.html </link>
  <guid> https://jacobzelko.com/04252020024813-median-filtering/index.html </guid>
  <description>
    <![CDATA[  An overview on how to use and implement a median filter  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Median Filtering</h1>
<p><strong>Date:</strong> April 25 2020</p>
<p><strong>Summary:</strong> An overview on how to use and implement a median filter</p>
<p><strong>Keywords:</strong> ##zettel #signalprocessing #noise #artifact #filtering #window #julialang #median #movingaverage #downsampling #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Algorithm<ol><li>Additional Consideration</li></ol></li><li>Example Implementation<ol><li>Output</li></ol></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>It is a non-linear digital filtering technique, used to remove noise from an image or signal. The main idea of the median filter is to run through the signal value by value, replacing each value with the median of neighboring values. The pattern of neighbors is called the &quot;window&quot;, which slides, entry by entry, over the entire signal.</p>
<h3 id="algorithm">Algorithm</h3>
<p>An explanation of implementing the algorithm is given in example form:</p>
<p>Given the original signal, \(x = (2, 3, 80, 6)\), a 1D Median Filter is applied as follows:</p>
\[
y1 = med(2, 3, 80) = 3
\]
\[
y2 = med(3, 80, 6) = med(3, 6, 80) = 6
\]
\[
y3 = med(80, 6, 2) = med(2, 6, 80) = 6
\]
\[
y4 = med(6, 2, 3) = med(2, 3, 6) = 3
\]
<p>Which yields the final filtered signal, \(y = (3, 6, 6, 3)\).</p>
<h4 id="additional_consideration">Additional Consideration</h4>
<p>In the example implementation, there is no value preceding the first value, thus the window &quot;wraps&quot; around the original to fulfill its window size.</p>
<p>There are other ways to handle filling the window other than wrapping such as:</p>
<ul>
<li><p>Avoiding selecting values directly located at either boundary of the signal.</p>
</li>
<li><p>Use other values from within the signal.</p>
</li>
<li><p>Shrink the window near the edges of the signal so that the window is always full.</p>
</li>
</ul>
<p>Furthermore, it is very good for salt-and-pepper noise/impulse noise &#40;e.g. noise that is caused by sharp and sudden disturbances in the image signal&#41;</p>
<h3 id="example_implementation">Example Implementation</h3>
<pre><code class="language-julia">using Plots # IMPORT FOR PLOTTING
using Statistics # IMPORT FOR &#96;median&#96; FUNCTION
using LaTeXStrings # IMPORT TO ENABLE LaTeX FORMATTING
gr&#40;&#41;let    # CHOOSE WINDOW AND INPUT VALUES OVER WHICH TO CALCULATE
    input &#61; 0:0.001:1
    window &#61; 30
    sampling_rate &#61; 15    # GENERATE GENERIC SIGNAL - IN THIS CASE sin&#40;2Π&#41;
    signal &#61; &#91;sin&#40;2 * pi * i&#41; for i in input&#93;    # ADDING RANDOM NOISE TO FUNCTION
    noisy_signal &#61; &#91;sin&#40;2 * pi * i&#41; &#43; rand&#40;&#91;-1, 1&#93;&#41; * round&#40;rand&#40;&#41;, digits &#61; 2&#41;
                    for i in input&#93;    # FILTER THE SIGNAL USING A MEDIAN FILTER &amp; DOWNFILTERING USING A MEDIAN FILTER
    downsampled_signal::Array&#123;Float32&#125; &#61; &#91;noisy_signal&#91;1&#93;&#93;
    downsampled_input::Array&#123;Float16&#125; &#61; &#91;0&#93;
    median_signal::Array&#123;Float32&#125; &#61; &#91;&#93;
    for i in 1:length&#40;signal&#41;
        if length&#40;noisy_signal&#41; - &#40;window &#43; i - 1&#41; &lt; 0
            forward &#61; noisy_signal&#91;i:end&#93;
            wrap &#61; noisy_signal&#91;1:abs&#40;length&#40;noisy_signal&#41; - &#40;window &#43; i - 1&#41;&#41;&#93;
            append&#33;&#40;median_signal, median&#40;vcat&#40;forward, wrap&#41;&#41;&#41;            # SETTING SAMPLING RATE AND CREATING DOWNSAMPLED OUTPUT
            if i &#37; sampling_rate &#61;&#61; 0
                append&#33;&#40;downsampled_input, input&#91;i&#93;&#41;
                append&#33;&#40;downsampled_signal, median&#40;vcat&#40;forward, wrap&#41;&#41;&#41;
            end
        else
            forward &#61; noisy_signal&#91;i:&#40;window &#43; i - 1&#41;&#93;
            append&#33;&#40;median_signal, median&#40;forward&#41;&#41;            # SETTING SAMPLING RATE AND CREATING DOWNSAMPLED OUTPUT
            if i &#37; sampling_rate &#61;&#61; 0
                append&#33;&#40;downsampled_input, input&#91;i&#93;&#41;
                append&#33;&#40;downsampled_signal, median&#40;forward&#41;&#41;
            end
        end
    end    # PLOT SIGNALS
    append&#33;&#40;downsampled_input, input&#91;end&#93;&#41;
    append&#33;&#40;downsampled_signal, noisy_signal&#91;end&#93;&#41;
    plot&#40;input, noisy_signal, label &#61; &quot;Noisy Signal&quot;, title &#61; &quot;Example of Median Filter&quot;&#41;
    plot&#33;&#40;input, median_signal, label &#61; &quot;Median Filtered Signal&quot;, linewidth &#61; 3&#41;
    plot&#33;&#40;input, signal, label &#61; L&quot;2\pi&quot;, linewidth &#61; 5&#41;
    plot&#33;&#40;downsampled_input, downsampled_signal, linewidth &#61; 3, color &#61; :black,
          label &#61; &quot;Downsampled Median Signal&quot;&#41;end</code></pre>
<h4 id="output">Output</h4>
<p><img src="04252020025710.png" alt="median_filter" /></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Median Filtering</em>. <a href="https://jacobzelko.com/04252020024813-median-filtering">https://jacobzelko.com/04252020024813-median-filtering</a>. April 25 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Sat, 25 Apr 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Definition of Data Fusion  ]]>
  </title>
  <link> https://jacobzelko.com/04222020154543-data-fusion/index.html </link>
  <guid> https://jacobzelko.com/04222020154543-data-fusion/index.html </guid>
  <description>
    <![CDATA[  One of the best definitions I have found for data fusion  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Definition of Data Fusion</h1>
<p><strong>Date:</strong> April 22 2020</p>
<p><strong>Summary:</strong> One of the best definitions I have found for data fusion</p>
<p><strong>Keywords:</strong> ##zettel #data #fusion #definition #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Defined as the use of multiple technologies or location systems simultaneously to form hierarchical and overlapping levels of sensing, sensor fusion can provide aggregate properties unavailable when using location systems individually</p>
<p>This definition of data fusion comes from <em>Hightower &amp; Borriello</em> &#91;1&#93; and I think it provides a very good explanation of what data fusion actually is. I decided to generalize it as their definition only concerns with location systems – here is my paraphrase:</p>
<p>When one utilizes differing technologies to form tiers of improving sensor accuracy; this methodology can compensate for the loss or absence of signal from other sensors by providing multiple overlaps for the same defining properties of a system.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Definition of Data Fusion</em>. <a href="https://jacobzelko.com/04222020154543-data-fusion">https://jacobzelko.com/04222020154543-data-fusion</a>. April 22 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; J. Hightower and G. Borriello, “Location systems for ubiquitous computing,” Computer, vol. 34, no. 8, pp. 57–66, 2001.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Wed, 22 Apr 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Global Programming Paradigm  ]]>
  </title>
  <link> https://jacobzelko.com/04182020162028-global-programming/index.html </link>
  <guid> https://jacobzelko.com/04182020162028-global-programming/index.html </guid>
  <description>
    <![CDATA[  A thought on a global overlapping paradigm for developing useful and just-in-time software  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Global Programming Paradigm</h1>
<p><strong>Date:</strong> April 18 2020</p>
<p><strong>Summary:</strong> A thought on a global overlapping paradigm for developing useful and just-in-time software</p>
<p><strong>Keywords:</strong> ##zettel #paradigms #models #writing #programming ##metascience #smart #blank #page #poet #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>I read a Q&amp;A article on Barbara Liskov &#91;1&#93; and the author made a very interesting comparison between Liskov&#39;s work of designing paradigms for creating well structured and crafted code with that of a Poet or Novelist. I have heard of comparisons like this before but I was quite intrigued by the latter – a programmer being compared to a writer. What piqued my interest the most about the article was the following statement,</p>
<p>&quot;As a computer scientist thinking about code, Liskov had no physical objects to work with. Like a novelist or a poet, <em>she was staring at a blank page</em>.&quot; &#40;emphasis added&#41;</p>
<p>The end of that statement, &quot;<em>blank page</em>&quot;, reminded me of the book <em>How to Take Smart Notes</em> &#91;2&#93; and my note on the book where Ahrens essentially believes that starting with a <a href="https://jacobzelko.com/03292020180520-smart-notes">blank page is the wrong idea in writing</a>. I wonder if the same could be true about programming. In effect, does a global approach to building software make more sense than to artificially package each and every piece of software separately? Could an approach like the <a href="https://jacobzelko.com/03092020031549-zettelkasten">Zettelkasten method</a> where, according to its <a href="https://jacobzelko.com/03092020031618-zettelkasten-principles">principles</a>, each thought is kept to itself and then linked to different associated pieces of knowledge, map to software development?</p>
<p>Upon reflection upon this note some time later, I think I was thinking about the concept of composition and composition of software&#33;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Global Programming Paradigm</em>. <a href="https://jacobzelko.com/04182020162028-global-programming">https://jacobzelko.com/04182020162028-global-programming</a>. April 18 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; S. D’Agostino, “The Architect of Modern Algorithms.” https://www.quantamagazine.org/barbara-liskov-is-the-architect-of-modern-algorithms-20191120/ &#40;accessed Apr. 18, 2020&#41;.</p>
<p>&#91;2&#93; S. Ahrens, How to Take Smart Notes: One Simple Technique to Boost Writing, Learning and Thinking – for Students, Academics and Nonfiction Book Writers. 2017.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Sat, 18 Apr 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  EDA as a Biomarker  ]]>
  </title>
  <link> https://jacobzelko.com/04092020153616-eda-biomarker/index.html </link>
  <guid> https://jacobzelko.com/04092020153616-eda-biomarker/index.html </guid>
  <description>
    <![CDATA[  How EDA is used generally as a biomarker.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>EDA as a Biomarker</h1>
<p><strong>Date:</strong> April 9 2020</p>
<p><strong>Summary:</strong> How EDA is used generally as a biomarker.</p>
<p><strong>Keywords:</strong> ##zettel #eda #biomarker #healthcare #biosystems #sensors #scl #skin #scr #response #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>The term <em>EDA</em> is often used synonymously in academic literature to refer to its usage as a non-invasive biomarker to investigate physiological arousal. EDA is generally recorded using two small electrodes and are usually &#91;1&#93;, &#91;2&#93; can be placed on the:</p>
<ul>
<li><p>Fingers</p>
</li>
<li><p>Palms</p>
</li>
<li><p>Feet</p>
</li>
</ul>
<p>These electrodes complete a circuit across the skin – the skin acts as a variable resistor – and then <a href="https://jacobzelko.com/03242020003215-eda-explained">measure changes in skin conductance</a> &#40;see note for more information on what variables EDA monitors&#41;. After the EDA signal is collected from the electrodes, the signal is typically &#40;by convention&#41; decomposed into skin conductance level <a href="https://jacobzelko.com/04092020161622-skin-conductance">SCL</a> and skin conductance responses <a href="https://jacobzelko.com/04092020162632-skin-response">SCR</a> &#40;click links to see definitions of both&#41;.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>EDA as a Biomarker</em>. <a href="https://jacobzelko.com/04092020153616-eda-biomarker">https://jacobzelko.com/04092020153616-eda-biomarker</a>. April 9 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; R. Kocielnik, N. Sidorova, F. M. Maggi, M. Ouwerkerk, and J. H. Westerink, “Smart technologies for long-term stress monitoring at work,” in Proceedings of the 26th IEEE international symposium on computer-based medical systems, 2013, pp. 53–58.</p>
<p>&#91;2&#93; M. van Dooren, J. H. Janssen, et al., “Emotional sweating across the body: Comparing 16 different skin conductance measurement locations,” Physiol. Behav., vol. 106, no. 2, pp. 298–304, 2012.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Thu, 09 Apr 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  What Is Skin Conductance Level?  ]]>
  </title>
  <link> https://jacobzelko.com/04092020161622-skin-conductance/index.html </link>
  <guid> https://jacobzelko.com/04092020161622-skin-conductance/index.html </guid>
  <description>
    <![CDATA[  Summary of what is skin conductance level.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>What Is Skin Conductance Level?</h1>
<p><strong>Date:</strong> April 9 2020</p>
<p><strong>Summary:</strong> Summary of what is skin conductance level.</p>
<p><strong>Keywords:</strong> ##zettel #eda #scl #skin #response  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Generally Skin Conductance Level &#40;SCL&#41; entails the slow onset of changes in a continuous stream of Electrodermal Activity data.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Is Skin Conductance Level?</em>. <a href="https://jacobzelko.com/04092020161622-skin-conductance">https://jacobzelko.com/04092020161622-skin-conductance</a>. April 9 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Thu, 09 Apr 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  What Is Skin Conductance Response?  ]]>
  </title>
  <link> https://jacobzelko.com/04092020162632-skin-response/index.html </link>
  <guid> https://jacobzelko.com/04092020162632-skin-response/index.html </guid>
  <description>
    <![CDATA[  A brief overview of what skin conductance response is and how it is conventionally used.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>What Is Skin Conductance Response?</h1>
<p><strong>Date:</strong> April 9 2020</p>
<p><strong>Summary:</strong> A brief overview of what skin conductance response is and how it is conventionally used.</p>
<p><strong>Keywords:</strong> ##zettel #scr #eda #fast #signal  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Skin conductance response &#40;SCR&#41; are the fast portions found in the decomposition of the EDA signal. They are then superimposed onto the <a href="https://jacobzelko.com/04092020161622-skin-conductance">Skin Conductance Level</a> &#40;click link to see what the SCL is&#41;.</p>
<p>Conventionally &#91;1&#93;–&#91;3&#93;, SCR is classified via the following criterion:</p>
<ul>
<li><p>An increase in EDA of at least \(0.05\mu S\) over a period of \(1 - 3\) seconds</p>
</li>
<li><p>Immediately after this increase, there should be seen a gradual decrease in EDA over \(3 - 15\) seconds to what value &#40;or <em>level</em>&#41; was recorded before the SCR event</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Is Skin Conductance Response?</em>. <a href="https://jacobzelko.com/04092020162632-skin-response">https://jacobzelko.com/04092020162632-skin-response</a>. April 9 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; M. E. Dawson, A. M. Schell, and D. L. Filion, “The electrodermal system.” 2017.</p>
<p>&#91;2&#93; R. Kocielnik, N. Sidorova, F. M. Maggi, M. Ouwerkerk, and J. H. Westerink, “Smart technologies for long-term stress monitoring at work,” in Proceedings of the 26th IEEE international symposium on computer-based medical systems, 2013, pp. 53–58.</p>
<p>&#91;3&#93; F. H. Wilhelm and W. T. Roth, “Ambulatory assessment of clinical anxiety,” Ambul. Assess. Comput.-Assist. Psychol. Psychophysiological Methods Monit. Field Stud., pp. 317–345, 1996.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Thu, 09 Apr 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Simple, Transparent, and Flexible Automated Quality Assessment Procedures for Ambulatory Electrodermal Activity  ]]>
  </title>
  <link> https://jacobzelko.com/04092020195141-transparent-eda-data/index.html </link>
  <guid> https://jacobzelko.com/04092020195141-transparent-eda-data/index.html </guid>
  <description>
    <![CDATA[  A simple, transparent, flexible, and automated quality assessment procedure for ambulatory EDA data  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Simple, Transparent, and Flexible Automated Quality Assessment Procedures for Ambulatory Electrodermal Activity</h1>
<p><strong>Date:</strong> April 9 2020</p>
<p><strong>Summary:</strong> A simple, transparent, flexible, and automated quality assessment procedure for ambulatory EDA data</p>
<p><strong>Keywords:</strong> ##bibliography #eda #rochester #eda #rules #simple #transparent #autism #children #pediatrics #archive</p>
<h1>Bibliography</h1>
<p>I. R. Kleckner et al., &quot;Simple, Transparent, and Flexible Automated Quality Assessment Procedures for Ambulatory Electrodermal Activity Data,&quot; IEEE Trans. Biomed. Eng., vol. 65, no. 7, pp. 1460–1467, Jul. 2018, doi: 10.1109/TBME.2017.2758643.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Rule-based Algorithm<ol><li>Notes on Algorithm Rules</li></ol></li><li>Misc Notes</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="rule-based_algorithm">Rule-based Algorithm</h3>
<p>The authors also decided to create a very simple rule-based algorithm in an effort to make results easily reproducible and understandable to researchers of differing backgrounds. This algorithm for assessing data quality was as is follows:</p>
<table><tr><th align="center">Number</th><th align="center">Rule</th><th align="center">Rationale</th></tr><tr><td align="center">1</td><td align="center">EDA is not within the range of \(0.05 - 60 \mu S\)</td><td align="center">Prevent &quot;floor&quot; and &quot;ceiling&quot; artifacts</td></tr><tr><td align="center">2</td><td align="center">EDA fluctuates too fast \((+/- 10 \frac{\mu S}{second})\)</td><td align="center">To prevent &quot;jump&quot; artifacts</td></tr><tr><td align="center">3</td><td align="center">Temperature not within 30-40 \(C\)</td><td align="center">Preserve best accuracy of data</td></tr><tr><td align="center">4</td><td align="center">EDA data within \(5\) sec of invalid sections</td><td align="center">Invalid sections based on rules \(1-3\)</td></tr></table>
<p>If the data did not adhere to these rules, it was classified as artifact. </p>
<h4 id="notes_on_algorithm_rules">Notes on Algorithm Rules</h4>
<p><em>1. In Rule 1, 60 was chosen as an upper limit specifically because that was the upper limit of the Q Sensor.</em></p>
<p><em>2. Rule 2&#39;s rationale came from &#91;1&#93;–&#91;3&#93;</em></p>
<p><em>3. For Rule 3, their data recorded temperatures of 32 - 36 \(C\) consistently for individuals</em></p>
<h3 id="misc_notes">Misc Notes</h3>
<ul>
<li><p>When collecting EDA data, the authors used solid conductive adhesive hydrogel Ag/AgCl electrodes &#40;22 mm square; model A10040-5 from Vermed; Buffalo, NY&#41;.</p>
</li>
<li><p>Used 181 hours worth of data collected from children and adolescents with autism in an at-home environment.</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Simple, Transparent, and Flexible Automated Quality Assessment Procedures for Ambulatory Electrodermal Activity</em>. <a href="https://jacobzelko.com/04092020195141-transparent-eda-data">https://jacobzelko.com/04092020195141-transparent-eda-data</a>. April 9 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; W. Boucsein, Electrodermal Activity. Boston, MA: Springer US, 2012. doi: 10.1007/978-1-4614-1126-0.</p>
<p>&#91;2&#93; R. Kocielnik, N. Sidorova, F. M. Maggi, M. Ouwerkerk, and J. H. Westerink, “Smart technologies for long-term stress monitoring at work,” in Proceedings of the 26th IEEE international symposium on computer-based medical systems, 2013, pp. 53–58.</p>
<p>&#91;3&#93; F. H. Wilhelm and W. T. Roth, “Ambulatory assessment of clinical anxiety,” Ambul. Assess. Comput.-Assist. Psychol. Psychophysiological Methods Monit. Field Stud., pp. 317–345, 1996.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Thu, 09 Apr 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Criteria for Creating a Note in the Zettelkasten  ]]>
  </title>
  <link> https://jacobzelko.com/03302020005409-note-criteria/index.html </link>
  <guid> https://jacobzelko.com/03302020005409-note-criteria/index.html </guid>
  <description>
    <![CDATA[  Simple criteria for when and how to add notes to the Zettelkasten  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Criteria for Creating a Note in the Zettelkasten</h1>
<p><strong>Date:</strong> March 30 2020</p>
<p><strong>Summary:</strong> Simple criteria for when and how to add notes to the Zettelkasten</p>
<p><strong>Keywords:</strong> ##zettel #zettelkasten #information #knowledge #criteria #questions #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Selecting Information for a Zettel</li><li>Zettel Creation</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="selecting_information_for_a_zettel">Selecting Information for a Zettel</h3>
<ul>
<li><p>Does this not add to the overall nature of the Zettelkasten? &#91;1&#93;</p>
</li>
<li><p>What sort of topics could this open in the Zettelkasten? Are these topics you are willing to invest into? &#91;1&#93;</p>
</li>
<li><p>Where does this new note possibly fit into in the rest of the conversation with your Zettelkasten? &#91;1&#93;</p>
</li>
<li><p>Can this information be added to an already existing Zettel or theme? &#91;1&#93;</p>
</li>
</ul>
<h3 id="zettel_creation">Zettel Creation</h3>
<ul>
<li><p>Do you have enough information do write a new zettel?&#91;1&#93;</p>
</li>
<li><p>Do you understand the information enough in the zettel you are creating? &#91;1&#93;</p>
</li>
<li><p>Each Zettel should fit onto a screen.  &#91;1&#93;</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Criteria for Creating a Note in the Zettelkasten</em>. <a href="https://jacobzelko.com/03302020005409-note-criteria">https://jacobzelko.com/03302020005409-note-criteria</a>. March 30 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; S. Ahrens, How to Take Smart Notes: One Simple Technique to Boost Writing, Learning and Thinking – for Students, Academics and Nonfiction Book Writers. 2017.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Mon, 30 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  We Are Not Linear; Why Do We Learn Linearly?  ]]>
  </title>
  <link> https://jacobzelko.com/03302020013824-linear-thinking/index.html </link>
  <guid> https://jacobzelko.com/03302020013824-linear-thinking/index.html </guid>
  <description>
    <![CDATA[  Idea on thinking linearly  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>We Are Not Linear; Why Do We Learn Linearly?</h1>
<p><strong>Date:</strong> March 30 2020</p>
<p><strong>Summary:</strong> Idea on thinking linearly</p>
<p><strong>Keywords:</strong> ##idea #thinking #education  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>I am not in full agreement that learning material should normally be presented in a linear fashion as the brain itself is not ordered generally in a linear fashion but rather a global and far-reaching format. My question is global learning a more effective presentation of knowledge type than linear learning? This thought was inspired by <em>How to Take Smart Notes</em> &#91;1&#93; </p>
<p>This idea is also linked to the idea of <a href="https://jacobzelko.com/03092020022908-education-spectrum">Education as a Spectrum</a>.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>We Are Not Linear; Why Do We Learn Linearly?</em>. <a href="https://jacobzelko.com/03302020013824-linear-thinking">https://jacobzelko.com/03302020013824-linear-thinking</a>. March 30 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; S. Ahrens, How to Take Smart Notes: One Simple Technique to Boost Writing, Learning and Thinking – for Students, Academics and Nonfiction Book Writers. 2017.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Mon, 30 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  How We Ought to Create  ]]>
  </title>
  <link> https://jacobzelko.com/03302020002654-ought-create/index.html </link>
  <guid> https://jacobzelko.com/03302020002654-ought-create/index.html </guid>
  <description>
    <![CDATA[  A note on how we ought to create  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>How We Ought to Create</h1>
<p><strong>Date:</strong> March 30 2020</p>
<p><strong>Summary:</strong> A note on how we ought to create</p>
<p><strong>Keywords:</strong> ##zettel #writing #creating #academia #music #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>I remember my guitar teacher, Greg Podoliak, said that you should compose music as if you composed for the world. You want to give your best always and be brave and bold with the thought. Music and writing are not dissimilar things.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>How We Ought to Create</em>. <a href="https://jacobzelko.com/03302020002654-ought-create">https://jacobzelko.com/03302020002654-ought-create</a>. March 30 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Mon, 30 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  How to Take Smart Notes  ]]>
  </title>
  <link> https://jacobzelko.com/03292020180520-smart-notes/index.html </link>
  <guid> https://jacobzelko.com/03292020180520-smart-notes/index.html </guid>
  <description>
    <![CDATA[  Takeaways from the book How to Take Smart Notes  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>How to Take Smart Notes</h1>
<p><strong>Date:</strong> March 29 2020</p>
<p><strong>Summary:</strong> Takeaways from the book How to Take Smart Notes</p>
<p><strong>Keywords:</strong> ##bibliography #knowledge #notetaking #zettelkasten #mentalmodels #writing #blog #archive</p>
<h1>Bibliography</h1>
<p>S. Ahrens, How to Take Smart Notes: One Simple Technique to Boost Writing, Learning and Thinking – for Students, Academics and Nonfiction Book Writers.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Quotes from the Book:</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>This was overall a book on knowledge management – in particular, how to take, digest, and use the notes we make while reading material, listening to lectures, or absorb knowledge in general. Sonke Ahrens, the author of the book, also gave a rather in-depth overview of the Zettelkasten method created by sociologist Niklas Luhmann. I found the book useful in giving legitimately very good advice on note-taking, great anecdotes to illustrate his point, and also assistance on using the Zettelkasten method. </p>
<p>Furthermore, Ahrens made an interesting point saying that if you are approaching writing where you start with just a blank page, you are missing the point. When you approach a blank page, it <em>ought</em> not feel blank but rather the place to put your notes and ideas together that you have been collecting about a particular topic. Ahrens believes that fundamental teachings about how to write long-form papers are wrong in that they do not start with the most crucial aspect of the writing process – free form thought. And free form thought, when investigating a topic, is best captured using a global sort of note taking method like the Zettelkasten.</p>
<h3 id="quotes_from_the_book">Quotes from the Book:</h3>
<pre><code class="language-julia">&quot;Every intellectual endeavour starts with a note&quot; &#91;pg 8&#93;&quot;We only write if it helps us with our own thinking.&quot; &#91;pg 101&#93;</code></pre>
<p>These two quotes get at the idea that when we write and create notes, we are not only creating notes but also playing with ideas and digesting them into our minds.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>How to Take Smart Notes</em>. <a href="https://jacobzelko.com/03292020180520-smart-notes">https://jacobzelko.com/03292020180520-smart-notes</a>. March 29 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Sun, 29 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  What are Mental Models?  ]]>
  </title>
  <link> https://jacobzelko.com/03292020221326-what-mental-models/index.html </link>
  <guid> https://jacobzelko.com/03292020221326-what-mental-models/index.html </guid>
  <description>
    <![CDATA[  A brief synopsis on what mental models are  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>What are Mental Models?</h1>
<p><strong>Date:</strong> March 29 2020</p>
<p><strong>Summary:</strong> A brief synopsis on what mental models are</p>
<p><strong>Keywords:</strong> ##zettel #mentalmodels #structure #thinking #knowledge  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Mental models are provide you with patterns of thinking. To paraphrase the author, Sonke Ahrens, in his book, <em>How to Take Smart Notes</em>, well-crafted structures &#40;in our case mental models&#41; are things you can trust as it works in the background to manage everything that prevents you from getting to what is of most importance &#91;1&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What are Mental Models?</em>. <a href="https://jacobzelko.com/03292020221326-what-mental-models">https://jacobzelko.com/03292020221326-what-mental-models</a>. March 29 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; S. Ahrens, How to Take Smart Notes: One Simple Technique to Boost Writing, Learning and Thinking – for Students, Academics and Nonfiction Book Writers. 2017.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Sun, 29 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Discrete Haar Wavelet Transform  ]]>
  </title>
  <link> https://jacobzelko.com/03272020050924-discrete-haar/index.html </link>
  <guid> https://jacobzelko.com/03272020050924-discrete-haar/index.html </guid>
  <description>
    <![CDATA[  Introduction to discrete haar wavelet transform and use cases  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Discrete Haar Wavelet Transform</h1>
<p><strong>Date:</strong> March 27 2020</p>
<p><strong>Summary:</strong> Introduction to discrete haar wavelet transform and use cases</p>
<p><strong>Keywords:</strong> ##zettel #signalprocessing #wavelet #changes #python  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Use Cases</li><li>Example Implementation</li><li>Example output</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>The Discrete Haar Wavelet Transform computes the degree of relatedness of continuous points in the original discrete signal. </p>
<h3 id="use_cases">Use Cases</h3>
<p>It is excellent for detecting edges in a signal and drastic changes in a signal </p>
<h3 id="example_implementation">Example Implementation</h3>
<pre><code class="language-python"># Declaring imports
import numpy as np
def gen_haar_matrix&#40;n, normalized&#61;None&#41;:
    #Source: 
    # 0. https://en.wikipedia.org/wiki/Haar_wavelet
    # 1. http://fourier.eng.hmc.edu/e161/lectures/Haar/index.html
    # 2. https://docs.scipy.org/doc/numpy/reference/generated/numpy.kron.html
    # 3. https://www.wikiwand.com/en/Kronecker_delta    # Allow only size n of power 2
    n &#61; 2**np.ceil&#40;np.log2&#40;n&#41;&#41;
    if n &gt; 2:
        h &#61; gen_haar_matrix&#40;n / 2&#41;
    else:
        return np.array&#40;&#91;&#91;1, 1&#93;, &#91;1, -1&#93;&#93;&#41;    # calculate upper haar part
    h_n &#61; np.kron&#40;h, &#91;1, 1&#93;&#41;
    # calculate lower haar part 
    if normalized:
        h_i &#61; np.sqrt&#40;n/2&#41;*np.kron&#40;np.eye&#40;len&#40;h&#41;&#41;, &#91;1, -1&#93;&#41;
    else:
        h_i &#61; np.kron&#40;np.eye&#40;len&#40;h&#41;&#41;, &#91;1, -1&#93;&#41;
    # combine parts
    h &#61; np.vstack&#40;&#40;h_n, h_i&#41;&#41;
    return h</code></pre>
<h3 id="example_output">Example output</h3>
<pre><code class="language-python">&gt; gen_haar_matrix&#40;n &#61; 4, normalized &#61; False&#41;&#91;&#91; 1.  1.  1.  1.&#93;
 &#91; 1.  1. -1. -1.&#93;
 &#91; 1. -1.  0. -0.&#93;
 &#91; 0. -0.  1. -1.&#93;&#93;
&gt; gen_haar_matrix&#40;n &#61; 4, normalized &#61; True&#41;&#91;&#91;   1.          1.          1.          1.   &#93;
 &#91;   1.          1.         -1.         -1.   &#93;
 &#91; sqrt&#40;2&#41;    -sqrt&#40;2&#41;       0.         -0.   &#93;
 &#91;   0.         -0.        sqrt&#40;2&#41;   -sqrt&#40;2&#41; &#93;&#93;</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Discrete Haar Wavelet Transform</em>. <a href="https://jacobzelko.com/03272020050924-discrete-haar">https://jacobzelko.com/03272020050924-discrete-haar</a>. March 27 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Fri, 27 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Artifact Removal Methods  ]]>
  </title>
  <link> https://jacobzelko.com/03272020062857-artifact-removal/index.html </link>
  <guid> https://jacobzelko.com/03272020062857-artifact-removal/index.html </guid>
  <description>
    <![CDATA[  An overview on commonly used signal processing methods to remove artifacts from signals.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Artifact Removal Methods</h1>
<p><strong>Date:</strong> March 27 2020</p>
<p><strong>Summary:</strong> An overview on commonly used signal processing methods to remove artifacts from signals.</p>
<p><strong>Keywords:</strong> ##summary #digital #signal #processing #artifact #removal #smoothing  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Moving Average Filters:</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="moving_average_filters">Moving Average Filters:</h3>
<ul>
<li><p><a href="https://jacobzelko.com/03272020064312-exponential-smoothing">Exponential Smoothing</a></p>
<ul>
<li><p><strong>Summary:</strong> An overview on how to use the exponential smoothing algorithm.</p>
</li>
</ul>
</li>
<li><p><a href="https://jacobzelko.com/04252020024813-median-filtering">Median Filtering</a></p>
<ul>
<li><p><strong>Summary:</strong> An overview on how to use and implement a median filter</p>
</li>
</ul>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Artifact Removal Methods</em>. <a href="https://jacobzelko.com/03272020062857-artifact-removal">https://jacobzelko.com/03272020062857-artifact-removal</a>. March 27 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Fri, 27 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Exponential Smoothing  ]]>
  </title>
  <link> https://jacobzelko.com/03272020064312-exponential-smoothing/index.html </link>
  <guid> https://jacobzelko.com/03272020064312-exponential-smoothing/index.html </guid>
  <description>
    <![CDATA[  An overview on how to use the exponential smoothing algorithm  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Exponential Smoothing</h1>
<p><strong>Date:</strong> March 27 2020</p>
<p><strong>Summary:</strong> An overview on how to use the exponential smoothing algorithm</p>
<p><strong>Keywords:</strong> ##zettel #signalprocessing #noise #artifact #smoothing #window #julialang #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Algorithm<ol><li>Additional Considerations</li></ol></li><li>Example Implementation<ol><li>Output</li></ol></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>The exponential smoothing algorithm is a recursive algorithm and is one of the more simple smoothing methods commonly used to remove small noise and motion artifacts from a discrete time series signal. However, it can be considered a &quot;manual&quot; algorithm due to having to manually determine a smoothing factor for it to work properly.</p>
<p>Per conversation with Post-Doc Researcher, Fredrik Bagge Carlson, another definition for the smoothing factor is the &quot;forgetting factor&quot;. A bigger value for the forgetting factor results in forgetting the memory built into the algorithm faster and focusing more on recent inputs.</p>
<p>Also, this method is classified as a moving average filter&#33;</p>
<h3 id="algorithm">Algorithm</h3>
<p>The algorithm is very simple in which it is described as:</p>
\[
s_1 = x_1
\]
\[
s_t = ax_t + (1 - \alpha)s_{t - 1} \space | \space t > 0
\]
<p>The variables are defined as follows:</p>
<ul>
<li></li>
</ul>
\[
    \{x_t\}
    \]
<p>  * The raw signal sequence</p>
<ul>
<li></li>
</ul>
\[
    \{s_t\}
    \]
<p>  * The smoothed output signal sequence</p>
<ul>
<li></li>
</ul>
\[
    t
    \]
<p>  * Time &#40;where &#36;t &gt; 0&#36;&#41;</p>
<ul>
<li></li>
</ul>
\[
    \alpha
    \]
<p>  * Smoothing factor &#40;must be chosen such that &#36;0 &lt; \alpha &lt;1&#36;&#41;</p>
<p>The weighted average in this case works when you take a portion of the current value x&#40;t&#41; from the original signal and a portion of the s&#40;t -1&#41; is summed together after being scaled by the forgetting factor. &#91;Explanation thanks to Fredrik Bagge Carlson&#93;</p>
<h4 id="additional_considerations">Additional Considerations</h4>
<ul>
<li><p>Each term in the sequence, \(\{s_t\}\), is counted as the weighted average of the current data point from the sequence \(\{x_t\}\) and the prior smoothed statistic, \(s_t\).</p>
</li>
<li><p>There is no clear method for choosing the value of the smoothing factor</p>
<ul>
<li>&#36;0 &lt;&lt;\alpha &lt; 1&#36;
<p>yields a smaller smoothing effect and &quot;value&quot; updating values more highly</p>
</li>
<li>&#36;0 &lt; \alpha &lt;&lt; 1&#36;
<p>yields a greater smoothing effect but does not respond greatly to recent updates</p>
</li>
</ul>
</li>
</ul>
<h3 id="example_implementation">Example Implementation</h3>
<pre><code class="language-julia">using Plots # IMPORT FOR PLOTTING
using LaTeXStrings # IMPORT TO ENABLE LaTeX FORMATTING
gr&#40;&#41;let    # Choose Smoothing Factor, α, And Input Values Over Which To Calculate
    # Choose α: 0 &lt; α &lt; 1
    input &#61; 0:0.001:1
    α &#61; 0.05    # Generate Generic Signal - In This Case Sin&#40;2π&#41;
    signal &#61; &#91;sin&#40;2 * pi * i&#41; for i in input&#93;    # Adding Random Noise To Function
    noisy_signal &#61;
        &#91;sin&#40;2 * pi * i&#41; &#43; rand&#40;&#91;-1, 1&#93;&#41; * round&#40;rand&#40;&#41;, digits &#61; 2&#41; for i in input&#93;    # Filter The Signal Using An Exponential Smoothing Filter
    exponential_signal::Array&#123;Float32&#125; &#61; &#91;noisy_signal&#91;1&#93;&#93;
    for i in 2:length&#40;signal&#41;
        smooth_term &#61; α * noisy_signal&#91;i&#93; &#43; &#40;1 - α&#41; * exponential_signal&#91;i-1&#93;
        append&#33;&#40;exponential_signal, smooth_term&#41;
    end
    # Plot Signals
    plot&#40;
        input,
        noisy_signal,
        label &#61; &quot;Noisy Signal&quot;,
        title &#61; &quot;Example of Exponential Smoothing&quot;,
    &#41;
    plot&#33;&#40;
        input,
        exponential_signal,
        label &#61; &quot;Exponentially Smoothed Signal&quot;,
        linewidth &#61; 3
    &#41;
    plot&#33;&#40;
        input,
        signal,
        label &#61; L&quot;sin&#40;2\pi&#41;&quot;,
        linewidth &#61; 5
    &#41;end</code></pre>
<h4 id="output">Output</h4>
<p><img src="1585295721254.png" alt="" /></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Exponential Smoothing</em>. <a href="https://jacobzelko.com/03272020064312-exponential-smoothing">https://jacobzelko.com/03272020064312-exponential-smoothing</a>. March 27 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Fri, 27 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Common Causes of Artifact in EDA Signals  ]]>
  </title>
  <link> https://jacobzelko.com/03272020061037-eda-artifacts/index.html </link>
  <guid> https://jacobzelko.com/03272020061037-eda-artifacts/index.html </guid>
  <description>
    <![CDATA[  An overview of common artifacts in EDA signals  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Common Causes of Artifact in EDA Signals</h1>
<p><strong>Date:</strong> March 27 2020</p>
<p><strong>Summary:</strong> An overview of common artifacts in EDA signals</p>
<p><strong>Keywords:</strong> ##zettel #eda #signalprocessing #biomarker #artifact #noise #skin #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>EDA artifacts can come from the electrodes used to collect EDA data &#91;1&#93;–&#91;3&#93;; examples being:</p>
<ul>
<li><p>Inconsistent pressure of the electrode to the skin</p>
</li>
<li><p>Physical activity &#40;such as pressure or movement&#41;</p>
</li>
<li><p>Arbitrary changes made to securing the device</p>
</li>
<li><p>Contextual/ambient factors &#40;such as humidity, temperature, etc. Anything that can cause excessive EDA signals beyond a device&#39;s detection abilities&#41;</p>
</li>
</ul>
<p>Overloading a device that records EDA signals is a special kind of artifact called &quot;bridging&quot; or &quot;saturation&quot;. &#91;4&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Common Causes of Artifact in EDA Signals</em>. <a href="https://jacobzelko.com/03272020061037-eda-artifacts">https://jacobzelko.com/03272020061037-eda-artifacts</a>. March 27 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; C. Tronstad, G. K. Johnsen, S. Grimnes, and Ø. G. Martinsen, “A study on electrode gels for skin conductance measurements,” Physiol. Meas., vol. 31, no. 10, p. 1395, 2010.</p>
<p>&#91;2&#93; S. Taylor, N. Jaques, Weixuan Chen, S. Fedor, A. Sano, and R. Picard, “Automatic identification of artifacts in electrodermal activity data,” in 2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society &#40;EMBC&#41;, Aug. 2015, pp. 1934–1937. doi: 10.1109/EMBC.2015.7318762.</p>
<p>&#91;3&#93; I. R. Kleckner et al., “Simple, Transparent, and Flexible Automated Quality Assessment Procedures for Ambulatory Electrodermal Activity Data,” IEEE Trans. Biomed. Eng., vol. 65, no. 7, pp. 1460–1467, Jul. 2018, doi: 10.1109/TBME.2017.2758643.</p>
<p>&#91;4&#93; S. for P. R. A. H. C. on E. Measures et al., “Publication recommendations for electrodermal measurements,” Psychophysiology, vol. 49, no. 8, pp. 1017–1034, 2012.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Fri, 27 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Call Center Stress Recognition with Person-Specific Models  ]]>
  </title>
  <link> https://jacobzelko.com/03272020083421-call-center/index.html </link>
  <guid> https://jacobzelko.com/03272020083421-call-center/index.html </guid>
  <description>
    <![CDATA[  Assessment of stress in call center employees using skin conductance sensors to measure SCR/EDA.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Call Center Stress Recognition with Person-Specific Models</h1>
<p><strong>Date:</strong> March 27 2020</p>
<p><strong>Summary:</strong> Assessment of stress in call center employees using skin conductance sensors to measure SCR/EDA.</p>
<p><strong>Keywords:</strong> ##bibliography #eda #mit #affectivecomputing #medialab #stress #archive</p>
<h1>Bibliography</h1>
<p>J. Hernandez, R. R. Morris, and R. W. Picard, &quot;Call Center Stress Recognition with Person-Specific Models,&quot; in Affective Computing and Intelligent Interaction, vol. 6974, S. D’Mello, A. Graesser, B. Schuller, and J.-C. Martin, Eds. Berlin, Heidelberg: Springer Berlin Heidelberg, 2011, pp. 125–134.</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>They had a small cohort of nine individuals working at a call center using skin conductance sensors to measure EDA. They used exponential smoothing and chose a smoothing factor, \(\alpha\), of \(0.8\) – it was unclear why this was chosen. They also elected to normalize the skin conductance signals on each individual between \(0\) and \(1\) to reduce variability between the cohort members. </p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Call Center Stress Recognition with Person-Specific Models</em>. <a href="https://jacobzelko.com/03272020083421-call-center">https://jacobzelko.com/03272020083421-call-center</a>. March 27 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Fri, 27 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  What Is Electrodermal Activity?  ]]>
  </title>
  <link> https://jacobzelko.com/03242020003215-eda-explained/index.html </link>
  <guid> https://jacobzelko.com/03242020003215-eda-explained/index.html </guid>
  <description>
    <![CDATA[  What electrodermal activity is and its pros and cons as a biomarker  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>What Is Electrodermal Activity?</h1>
<p><strong>Date:</strong> March 24 2020</p>
<p><strong>Summary:</strong> What electrodermal activity is and its pros and cons as a biomarker</p>
<p><strong>Keywords:</strong> ##zettel #biomarker #biology #physiology #health #signal #signalprocessing #stress  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Electrodermal activity &#40;EDA&#41; broadly refers to any electrical activity across the dermis of the skin &#40;the dermis being the outermost layer of the skin&#41;. Whenever the body experiences stress – this could be in the form of an ambient temperature change, physical activity, etc. – the sympathetic nervous system &#40;SNS&#41; increases sudomotor innervation, which leads to increases in EDA and sweating. The SNS is directly influenced by parts of the brain responsible for emotional response – the hypothalamus and limbic system. Because of this codependency, EDA is commonly used to study stress and other affective behavior &#40;mood, disorders, etc.&#41;.</p>
<p>EDA has been used to study the following sort of conditions:</p>
<ul>
<li><p>Arousal in Emotion &#91;1&#93;</p>
</li>
<li><p>Attention &#91;2&#93;</p>
</li>
<li><p>Decision-making &#91;3&#93;</p>
</li>
<li><p>Pain &#91;4&#93;</p>
</li>
<li><p>Stress &#91;5&#93;</p>
</li>
<li><p>Autism &#91;6&#93;</p>
</li>
<li><p>Phobias &#91;7&#93;</p>
</li>
<li><p>Panic Disorder &#91;8&#93;</p>
</li>
<li><p>Attention Deficit Disorders &#91;9&#93;</p>
</li>
<li><p>Side Effects from Cancer Treatments &#91;10&#93;</p>
</li>
</ul>
<p>The use cases of EDA is further explored by <em>Boucsein et. al.</em> in their book, <em>Electrodermal Activity</em>. &#91;11&#93;</p>
<p>Furthermore, EDA is a generalization of the overall signal – in reality, this signal is often decomposed into <a href="https://jacobzelko.com/04092020162632-skin-response">Skin Conductance Response &#40;SCR&#41;</a> and <a href="https://jacobzelko.com/04092020161622-skin-conductance">Skin Conductance Level &#40;SCL&#41;</a>.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>What Is Electrodermal Activity?</em>. <a href="https://jacobzelko.com/03242020003215-eda-explained">https://jacobzelko.com/03242020003215-eda-explained</a>. March 24 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; M. M. Bradley and P. J. Lang, “Emotion and motivation.” 2007.</p>
<p>&#91;2&#93; M. M. Bradley, “Natural selective attention: Orienting and emotion,” Psychophysiology, vol. 46, no. 1, pp. 1–11, 2009.</p>
<p>&#91;3&#93; A. Bechara, H. Damasio, A. R. Damasio, and G. P. Lee, “Different contributions of the human amygdala and ventromedial prefrontal cortex to decision-making,” J. Neurosci., vol. 19, no. 13, pp. 5473–5481, 1999.</p>
<p>&#91;4&#93; S. Geuter, M. Gamer, S. Onat, and C. Büchel, “Parametric trial-by-trial prediction of pain by easily available physiological measures,” PAIN®, vol. 155, no. 5, pp. 994–1001, 2014.</p>
<p>&#91;5&#93; T. Reinhardt, C. Schmahl, S. Wüst, and M. Bohus, “Salivary cortisol, heart rate, electrodermal activity and subjective stress responses to the Mannheim Multicomponent Stress Test &#40;MMST&#41;,” Psychiatry Res., vol. 198, no. 1, pp. 106–111, 2012.</p>
<p>&#91;6&#93; E. B. Prince et al., “The relationship between autism symptoms and arousal level in toddlers with autism spectrum disorder, as measured by electrodermal activity,” Autism, vol. 21, no. 4, pp. 504–508, 2017.</p>
<p>&#91;7&#93; F. H. Wilhelm and W. T. Roth, “Taking the laboratory to the skies: Ambulatory assessment of self-report, autonomic, and respiratory responses in flying phobia,” Psychophysiology, vol. 35, no. 5, pp. 596–606, 1998.</p>
<p>&#91;8&#93; A. E. Meuret et al., “Do unexpected panic attacks occur spontaneously?” Biol. Psychiatry, vol. 70, no. 10, pp. 985–991, 2011.</p>
<p>&#91;9&#93; R. G. O’Connell, M. A. Bellgrove, P. M. Dockree, and I. H. Robertson, “Reduced electrodermal response to errors predicts poor sustained attention performance in attention deficit hyperactivity disorder,” Neuroreport, vol. 15, no. 16, pp. 2535–2538, 2004.</p>
<p>&#91;10&#93; M.-H. Savard, J. Savard, A. Caplette-Gingras, H. Ivers, and C. Bastien, “Relationship between objectively recorded hot flashes and sleep disturbances among breast cancer patients: Investigating hot flash characteristics other than frequency,” Menopause, vol. 20, no. 10, pp. 997–1005, 2013.</p>
<p>&#91;11&#93; W. Boucsein, Electrodermal Activity. Boston, MA: Springer US, 2012. doi: 10.1007/978-1-4614-1126-0.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 24 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Electrodermal Activity  ]]>
  </title>
  <link> https://jacobzelko.com/03232020235136-electrodermal-activity/index.html </link>
  <guid> https://jacobzelko.com/03232020235136-electrodermal-activity/index.html </guid>
  <description>
    <![CDATA[  A summary of what electrodermal activity is and its use as a biomarker and use in signal processing.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Electrodermal Activity</h1>
<p><strong>Date:</strong> March 23 2020</p>
<p><strong>Summary:</strong> A summary of what electrodermal activity is and its use as a biomarker and use in signal processing.</p>
<p><strong>Keywords:</strong> ##summary ##signalprocessing ##healthcare #informatics #health #signalprocessing #signal #biomarker  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Handling Signal</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<ul>
<li><p><a href="https://jacobzelko.com/03242020003215-eda-explained">What Is Electrodermal Activity?</a></p>
</li>
</ul>
<pre><code class="language-julia">- **Summary:** What electrodermal activity is and its pros and cons as a biomarker</code></pre>
<ul>
<li><p><a href="https://jacobzelko.com/03272020061037-eda-artifacts">Common Causes of Artifact in EDA Signals</a></p>
</li>
</ul>
<pre><code class="language-julia">- **Summary:** An overview of common artifacts in EDA signals</code></pre>
<h3 id="handling_signal">Handling Signal</h3>
<ul>
<li><p><a href="https://jacobzelko.com/04092020195141-transparent-eda-data">Simple, Transparent, and Flexible Automated Quality Assessment Procedures for Ambulatory Electrodermal Activity</a></p>
</li>
</ul>
<pre><code class="language-julia">- **Summary:** A simple, transparent, flexible, and automated quality assessment procedure for ambulatory EDA data
- **Rationale:** FANTASTIC implementation on how to parse through EDA artifact -- very useful with a straight-forward algorithm to use</code></pre>
<ul>
<li><p><a href="https://jacobzelko.com/03272020062857-artifact-removal">Artifact Removal Methods</a></p>
</li>
</ul>
<pre><code class="language-julia">- **Summary:** An overview on commonly used signal processing methods to remove artifacts from signals.
- **Rationale:** Moving average filters seem to hold the most promise in processing EDA.</code></pre>
<ul>
<li><p><a href="https://jacobzelko.com/03272020083421-call-center">Call Center Stress Recognition with Person-Specific Models</a></p>
</li>
</ul>
<pre><code class="language-julia">- **Summary:** Assessment of stress in call center employees using skin conductance sensors to measure SCR/EDA.
- **Rationale:** Showed useful methods on how to process EDA data of a small cohort</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Electrodermal Activity</em>. <a href="https://jacobzelko.com/03232020235136-electrodermal-activity">https://jacobzelko.com/03232020235136-electrodermal-activity</a>. March 23 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Mon, 23 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Causality and Information Retrieval  ]]>
  </title>
  <link> https://jacobzelko.com/03212020002114-causality-information/index.html </link>
  <guid> https://jacobzelko.com/03212020002114-causality-information/index.html </guid>
  <description>
    <![CDATA[  Thoughts on why I think JITRs are inferior to causal models.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Causality and Information Retrieval</h1>
<p><strong>Date:</strong> March 21 2020</p>
<p><strong>Summary:</strong> Thoughts on why I think JITRs are inferior to causal models.</p>
<p><strong>Keywords:</strong> ##zettel #justintime #informationretrieval #jitrs #causality #reasoning #ai #agi #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>I think Remembrance and Just In-Time Information Retrieval Agents &#40;nicknamed JITRs&#41; &#91;1&#93;, &#91;2&#93; partially – maybe by about 75&#37; – miss the point of truly aiding the human mind. On the surface, these tools come close to mimicking the chain of sub-thoughts and actions associated with a thought. A chain of thought being described in the following example: </p>
<pre><code class="language-julia">Thought: I wonder if I need my umbrella for today?
Goal: Find out if I need my umbrella for the day.Sub-Thought 1: I wonder what the weather is like for today?
Sub-Thought 2: I wonder what the probability of rain is for today?
Sub-Thought 3: I wonder where I should find this information?Action 1: Person searches for weather forecast on internet.
Action 2: Person finds local weather forecast.
Action 3: Person identifies chance of rain.Information Retrieved: There is a 75&#37; chance of rain today.Conclusion: I need my umbrella</code></pre>
<p>However, JITRs best option is to guess at what the eventual end goal of a chain of thought is but it has to forego guessing the sub-thoughts leading to the desired conclusion. I think that is why JITRs have found use, but I think it is the wrong problem to address. </p>
<p>In practice it is a very different approach, but I think to use causal modeling similar to what Judea Pearl posits is the better approach &#91;3&#93;, &#91;4&#93;.</p>
<p>Topically a JITR could watch you begin searching for allergies on a computer. Immediately, it delivers you results on common allergies. This could be useful but still is not the <em>most</em> useful as it is just guessing based on the search and some of the context of your search query. In actuality, you were trying to find information about the pollen level of your area for the day and if you should take your allergy medication prophylactically.</p>
<p>Instead, a causal agent might function similarly at first but instead of giving you a list of allergies, gives you more concise information. The causal agent infers, based on some history it has of you, you are worried if you should take your allergy medication that day. Instead, the agent just gives you information on pollen levels throughout the week based on local weather reports.</p>
<p>Though one can argue that there is guessing at place in either situation I think the latter proves far more effective than the former approach.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Causality and Information Retrieval</em>. <a href="https://jacobzelko.com/03212020002114-causality-information">https://jacobzelko.com/03212020002114-causality-information</a>. March 21 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; B. J. Rhodes and P. Maes, “Just-in-time information retrieval agents,” IBM Syst. J., vol. 39, no. 3.4, pp. 685–704, 2000, doi: 10.1147/sj.393.0685.</p>
<p>&#91;2&#93; B. J. Rhodes and T. Starner, “Remembrance Agent: A Continuously Running Automated Information Retrieval System,” p. 4.</p>
<p>&#91;3&#93; L. Fridman, “Judea Pearl: Causal Reasoning, Counterfactuals, Bayesian Networks, and the Path to AGI | MIT | Artificial Intelligence Podcast,” Dec. 11, 2019. https://lexfridman.com/judea-pearl/ &#40;accessed Mar. 21, 2020&#41;.</p>
<p>&#91;4&#93; J. Pearl, Causality Models, Reasoning and Inference by Judea Pearl. 2009.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Sat, 21 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Monthly Planning in a Bullet Journal  ]]>
  </title>
  <link> https://jacobzelko.com/03192020013347-bullet-journal-month/index.html </link>
  <guid> https://jacobzelko.com/03192020013347-bullet-journal-month/index.html </guid>
  <description>
    <![CDATA[  How to create a monthly plan when using a bullet journal.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Monthly Planning in a Bullet Journal</h1>
<p><strong>Date:</strong> March 19 2020</p>
<p><strong>Summary:</strong> How to create a monthly plan when using a bullet journal.</p>
<p><strong>Keywords:</strong> ##zettel #bulletjournal #productivity #monthly  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Overview</li><li>Monthly Breakdown</li><li>Templates:<ol><li>Habit Tracker</li><li>Monthly Log</li></ol></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="overview">Overview</h3>
<p>In the monthly plan, one should use this as a big picture preview of the upcoming month and each day you should only have one item about the biggest event for that day. Keep it short and concise&#33;&#33;&#33;</p>
<h3 id="monthly_breakdown">Monthly Breakdown</h3>
<p>Each day is logged here; furthermore, the following can be recorded:</p>
<ol>
<li><p>Goals for the month</p>
</li>
<li><p>Major upcoming tasks for the month</p>
</li>
<li><p>Habits &#40;good to break it down as a daily chart of sorts&#41;</p>
</li>
</ol>
<p>Choose what works for you and continue with it; with the major upcoming tasks, I would suggest putting that in your monthly log.</p>
<h3 id="templates">Templates:</h3>
<h4 id="habit_tracker">Habit Tracker</h4>
<p>Here is an example of a habit tracker that could be included in the <a href="https://jacobzelko.com/03192020035337-bullet-journal-weekly">weekly plan for each week</a>:</p>
<table><tr><th align="center">Habit</th><th align="center">M</th><th align="center">Tu</th><th align="center">W</th><th align="center">Tr</th><th align="center">F</th><th align="center">Sa</th><th align="center">Su</th></tr><tr><td align="center">Sleep b/w 22:00 and 23:00</td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td></tr><tr><td align="center">Wake up by 08:00</td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td></tr><tr><td align="center">Go for a walk</td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td></tr><tr><td align="center">Journal</td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td></tr><tr><td align="center">Tea with God</td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td></tr><tr><td align="center">Read for 15 min</td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td></tr><tr><td align="center">Study JavaScript for 15 min</td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td><td align="center"></td></tr></table>
<h4 id="monthly_log">Monthly Log</h4>
<p>Here is an example of what a monthly log could look like:</p>
<table><tr><th align="right">Date</th><th align="center">Entry</th></tr><tr><td align="right">01</td><td align="center">–-</td></tr><tr><td align="right">02</td><td align="center">–-</td></tr><tr><td align="right">03</td><td align="center">–-</td></tr><tr><td align="right">04</td><td align="center">–-</td></tr><tr><td align="right">05</td><td align="center">–-</td></tr><tr><td align="right">06</td><td align="center">–-</td></tr><tr><td align="right">07</td><td align="center">–-</td></tr><tr><td align="right">08</td><td align="center">–-</td></tr><tr><td align="right">09</td><td align="center">–-</td></tr><tr><td align="right">10</td><td align="center">–-</td></tr><tr><td align="right">11</td><td align="center">–-</td></tr><tr><td align="right">12</td><td align="center">–-</td></tr><tr><td align="right">13</td><td align="center">–-</td></tr><tr><td align="right">14</td><td align="center">–-</td></tr><tr><td align="right">15</td><td align="center">–-</td></tr><tr><td align="right">16</td><td align="center">–-</td></tr><tr><td align="right">17</td><td align="center">–-</td></tr><tr><td align="right">18</td><td align="center">–-</td></tr><tr><td align="right">19</td><td align="center">–-</td></tr><tr><td align="right">20</td><td align="center"></td></tr><tr><td align="right">21</td><td align="center"></td></tr><tr><td align="right">22</td><td align="center"></td></tr><tr><td align="right">23</td><td align="center"></td></tr><tr><td align="right">24</td><td align="center"></td></tr><tr><td align="right">25</td><td align="center"></td></tr><tr><td align="right">26</td><td align="center"></td></tr><tr><td align="right">27</td><td align="center"></td></tr><tr><td align="right">28</td><td align="center"></td></tr><tr><td align="right">29</td><td align="center"></td></tr><tr><td align="right">30</td><td align="center"></td></tr><tr><td align="right">31</td><td align="center"></td></tr></table>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Monthly Planning in a Bullet Journal</em>. <a href="https://jacobzelko.com/03192020013347-bullet-journal-month">https://jacobzelko.com/03192020013347-bullet-journal-month</a>. March 19 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  GTD Implementation  ]]>
  </title>
  <link> https://jacobzelko.com/03192020050207-gtd-implementation/index.html </link>
  <guid> https://jacobzelko.com/03192020050207-gtd-implementation/index.html </guid>
  <description>
    <![CDATA[  A guide on how GTD is implemented.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>GTD Implementation</h1>
<p><strong>Date:</strong> March 19 2020</p>
<p><strong>Summary:</strong> A guide on how GTD is implemented.</p>
<p><strong>Keywords:</strong> ##zettel #gtd #productivity #lists #projectmanagement #projects  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Implementation</li><li>Implementation Flow Chart</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="implementation">Implementation</h3>
<p>GTD consists of utilizing lists to break down information as it enters your brain. Here are the main lists used:</p>
<ol>
<li><p><strong>The Intake</strong> - this is raw information that may come in from your colleagues, class, or situation.</p>
</li>
<li><p><strong>Projects</strong> - this contains what projects you have going on</p>
</li>
<li><p><strong>Next Actions</strong> - tasks that require immediate or imminent volition go here</p>
</li>
<li><p><strong>Waiting For</strong> - tasks that you delegate or are waiting on others to accomplish</p>
</li>
<li><p><strong>Future List</strong> - tasks or ideas that may be a stretch at the current moment but worth revisiting</p>
</li>
</ol>
<h3 id="implementation_flow_chart">Implementation Flow Chart</h3>
<p>It can be somewhat confusing to parse the intake; this flow diagram shows and easy to use method of how to break down information:</p>
<p><img src="03182020054832-gtd-flowchart.jpg" alt="" /></p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>GTD Implementation</em>. <a href="https://jacobzelko.com/03192020050207-gtd-implementation">https://jacobzelko.com/03192020050207-gtd-implementation</a>. March 19 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Get Things Done  ]]>
  </title>
  <link> https://jacobzelko.com/03192020045854-get-things-done/index.html </link>
  <guid> https://jacobzelko.com/03192020045854-get-things-done/index.html </guid>
  <description>
    <![CDATA[  An overview of David Allen&#39;s &#39;Get Things Done&#39; framework to manage projects, tasks, and life.  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Get Things Done</h1>
<p><strong>Date:</strong> March 19 2020</p>
<p><strong>Summary:</strong> An overview of David Allen&#39;s &#39;Get Things Done&#39; framework to manage projects, tasks, and life.</p>
<p><strong>Keywords:</strong> ##summary ##gtd #productivity #models #business #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<ul>
<li><p><a href="https://jacobzelko.com/03192020050130-gtd-definition">GTD Definition</a></p>
</li>
</ul>
<pre><code class="language-julia">- **Summary:** A concise definition of what the GTD framework is.</code></pre>
<ul>
<li><p><a href="https://jacobzelko.com/03192020050207-gtd-implementation">GTD Implementation</a></p>
</li>
</ul>
<pre><code class="language-julia">- **Summary:** A guide on how GTD is implemented.</code></pre>
<ul>
<li><p><a href="https://jacobzelko.com/03192020050249-gtd-weekly-review">GTD Weekly Reviews</a></p>
</li>
</ul>
<pre><code class="language-julia">- **Summary:** How to conduct weekly reviews using GTD.</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Get Things Done</em>. <a href="https://jacobzelko.com/03192020045854-get-things-done">https://jacobzelko.com/03192020045854-get-things-done</a>. March 19 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  GTD Definition  ]]>
  </title>
  <link> https://jacobzelko.com/03192020050130-gtd-definition/index.html </link>
  <guid> https://jacobzelko.com/03192020050130-gtd-definition/index.html </guid>
  <description>
    <![CDATA[  A concise definition of what the GTD framework is.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>GTD Definition</h1>
<p><strong>Date:</strong> March 19 2020</p>
<p><strong>Summary:</strong> A concise definition of what the GTD framework is.</p>
<p><strong>Keywords:</strong> ##zettel #productivity #model #framework #definition #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>GTD, or <em>Getting Things Done</em>, is a productivity framework created by David Allen to free your mind from as much additional load as possible while maintaining projects, lists, and other items pertaining to day-to-day operations. </p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>GTD Definition</em>. <a href="https://jacobzelko.com/03192020050130-gtd-definition">https://jacobzelko.com/03192020050130-gtd-definition</a>. March 19 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Trigger Lists  ]]>
  </title>
  <link> https://jacobzelko.com/03192020050346-trigger-list/index.html </link>
  <guid> https://jacobzelko.com/03192020050346-trigger-list/index.html </guid>
  <description>
    <![CDATA[  Trigger lists can be used to &#39;trigger&#39; ideas or thoughts by reading custom phrases or items on a list.  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Trigger Lists</h1>
<p><strong>Date:</strong> March 19 2020</p>
<p><strong>Summary:</strong> Trigger lists can be used to &#39;trigger&#39; ideas or thoughts by reading custom phrases or items on a list.</p>
<p><strong>Keywords:</strong> ##zettel #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>A trigger list is a list of key terms that as you read through them, should remind or &quot;trigger&quot; a thought of something that you perhaps forgot or did not remember pertaining to your life.</p>
<p>Here is an example trigger list:</p>
<pre><code class="language-mkd">- Projects started, not completed
- Projects that need to be started
- Commitments/promises to others
- Significant Other
- Family
- Friends
- Classmates
- Borrowed items
- Projects: other organizations
- Service
- Civic
- Volunteer
- Communications to make/get
- Family
- Friends
- Professional
- Initiate or respond to:
- Phone calls
- Text messages
- Voicemail
- E-mail
- Snail mail
- Social Media
- Upcoming events
- Special occasions
- Birthdays
- Anniversaries
- Weddings
- Graduations
- Holidays
- Travel
- Weekend trips
- Vacations
- Social events
- Cultural events
- Sporting events
- Things to do
- Places to go
- People to meet/invite
- Local attractions
- Administration
- Financial
- Bills
- Banks
- Investments
- Loans
- Taxes
- Insurance
- Legal affairs
- Filing
- Waiting for...
- Mail order
- Repair
- Reimbursements
- Loaned items
- Medical data
- RSVPs
- Home/household
- Landscape
- Kitchen things
- Washer/dryer/vacuum
- Areas to organize/clean
- TV
- VCR/DVD
- Music/CDs/tapes
- Phones
- Closets/clothes
- Vehicle repair/maintenance
- Tools
- Luggage
- Computers
- Software
- Hardware
- Connections
- CD/DVD Drive
- E-mail
- Internet
- Social Media
- Health care
- Doctors
- Dentists
- Specialists
- Hobbies
- Books
- CDs
- MP3s
- Podcasts
- Videos
- Apps
- Errands
- Hardware store
- Pharmacy
- Supermarket
- Bank
- Cleaner
- Bookstore
- Library
- Clothing store
- Community
- Neighborhood
- Schools
- Local government
- Civic issues</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Trigger Lists</em>. <a href="https://jacobzelko.com/03192020050346-trigger-list">https://jacobzelko.com/03192020050346-trigger-list</a>. March 19 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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<item>
  <title>
    <![CDATA[  Bullet Journal  ]]>
  </title>
  <link> https://jacobzelko.com/03192020013253-bullet-journal/index.html </link>
  <guid> https://jacobzelko.com/03192020013253-bullet-journal/index.html </guid>
  <description>
    <![CDATA[  An overview of how to use a bullet journal and how to make one.  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Bullet Journal</h1>
<p><strong>Date:</strong> March 19 2020</p>
<p><strong>Summary:</strong> An overview of how to use a bullet journal and how to make one.</p>
<p><strong>Keywords:</strong> ##summary ##bulletjournal #productivity #model #writing #journaling #reflection #projectmanagement #mentalhealth #creativity #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<ul>
<li><p><a href="https://jacobzelko.com/03192020013347-bullet-journal-month">Monthly Planning in a Bullet Journal</a></p>
</li>
</ul>
<pre><code class="language-julia">- **Summary:** How to create a monthly plan when using a bullet journal.</code></pre>
<ul>
<li><p><a href="https://jacobzelko.com/03192020035337-bullet-journal-weekly">Weekly Planning in a Bullet Journal</a></p>
</li>
</ul>
<pre><code class="language-julia">- **Summary:** How to create a weekly plan when using a bullet journal.</code></pre>
<ul>
<li><p><a href="https://jacobzelko.com/03192020035441-bullet-journal-daily">Daily Planning in a Bullet Journal</a></p>
</li>
</ul>
<pre><code class="language-julia">- **Summary:** How to create a daily plan when using a bullet journal.</code></pre>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Bullet Journal</em>. <a href="https://jacobzelko.com/03192020013253-bullet-journal">https://jacobzelko.com/03192020013253-bullet-journal</a>. March 19 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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<item>
  <title>
    <![CDATA[  Daily Planning in a Bullet Journal  ]]>
  </title>
  <link> https://jacobzelko.com/03192020035441-bullet-journal-daily/index.html </link>
  <guid> https://jacobzelko.com/03192020035441-bullet-journal-daily/index.html </guid>
  <description>
    <![CDATA[  How to create a daily plan when using a bullet journal.  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Daily Planning in a Bullet Journal</h1>
<p><strong>Date:</strong> March 19 2020</p>
<p><strong>Summary:</strong> How to create a daily plan when using a bullet journal.</p>
<p><strong>Keywords:</strong> ##zettel #bulletjournal #productivity #journaling #writing #daily #key  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Keys</li><li>Task Symbols<ol><li>Example<ol><li>To-do&#39;s:</li><li>Review:</li></ol></li><li>Short Form Journaling Symbols<ol><li>Example</li></ol></li></ol></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Generally speaking, you want the daily entry to: </p>
<ol>
<li><p>Be concise and minimal</p>
</li>
<li><p>Contain your tasks for the day</p>
</li>
<li><p>Contain your agenda for the day</p>
</li>
</ol>
<p>You could Split each entry in half with daily agenda on top and tasks on the bottom</p>
<h3 id="keys">Keys</h3>
<p>A general rule of thumb is to keep symbology as simple as possibly in bullet journal. Therefore, here are the biggest and most important symbols in bullet journaling&#33;</p>
<h3 id="task_symbols">Task Symbols</h3>
<p>Here are some common symbols one can use for task management and daily review:</p>
<ul>
<li><ul>
<li><p>I am a task&#33; </p>
<ul>
<li><ul>
<li><p>I am a subtask&#33;</p>
</li>
</ul>
</li>
</ul>
</li>
</ul>
</li>
</ul>
<p>? - I am a migrated task - I was either moved to a later day ? - I am a task in progress ? - I am a completed task&#33;</p>
<h4 id="example">Example</h4>
<h5 id="to-dos">To-do&#39;s:</h5>
<ul>
<li><p>Email Nick plans</p>
<ul>
<li><p>CC Jen</p>
</li>
</ul>
</li>
<li><p>Review Mohsen&#39;s manuscript</p>
</li>
<li><p>Meet with Chaitra</p>
</li>
</ul>
<h5 id="review">Review:</h5>
<ul>
<li><p>Email Nick plans ?</p>
<ul>
<li><p>CC Jen ?</p>
</li>
</ul>
</li>
<li><p>Review Mohsen&#39;s manuscript ?</p>
</li>
<li><p>Meet with Chaitra ?</p>
</li>
</ul>
<h4 id="short_form_journaling_symbols">Short Form Journaling Symbols</h4>
<p>Here are symbols one can use for writing short form thoughts and journal entries:</p>
<ul>
<li><p>Standard entry bullet</p>
</li>
</ul>
<p>❔ - This is something I want to learn more about ⚡ - this is an idea I had</p>
<h5 id="example__2">Example</h5>
<ul>
<li><p>Chatted with Abby about Project X</p>
</li>
<li><p>Learned about Bullet Journals</p>
</li>
<li><p>I want to learn more about GTD ?</p>
</li>
<li><p>How easy is it to make a ventilator? ⚡</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Daily Planning in a Bullet Journal</em>. <a href="https://jacobzelko.com/03192020035441-bullet-journal-daily">https://jacobzelko.com/03192020035441-bullet-journal-daily</a>. March 19 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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    <![CDATA[  Weekly Planning in a Bullet Journal  ]]>
  </title>
  <link> https://jacobzelko.com/03192020035337-bullet-journal-weekly/index.html </link>
  <guid> https://jacobzelko.com/03192020035337-bullet-journal-weekly/index.html </guid>
  <description>
    <![CDATA[  How to create a weekly plan when using a bullet journal.  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Weekly Planning in a Bullet Journal</h1>
<p><strong>Date:</strong> March 19 2020</p>
<p><strong>Summary:</strong> How to create a weekly plan when using a bullet journal.</p>
<p><strong>Keywords:</strong> ##zettel #bulletjournal #productivity #weekly #gtd #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Layout</li><li>Preview</li><li>Review</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>The weekly plan is very similar to the <a href="https://jacobzelko.com/03192020013347-bullet-journal-month">monthly plan</a> but is on a much smaller scale. If anything, it is much more similar to a weekly planner with an added twist of being an exercise in reflection and journaling. The weekly plan comprises of two main parts being:</p>
<ol>
<li><p>Preview - where you plan for the week ahead</p>
</li>
<li><p>Review - where you reflect on the previous week</p>
</li>
</ol>
<h3 id="layout">Layout</h3>
<p>Generally, it is very brief and contains the following:</p>
<ol>
<li><p>Major to-do&#39;s of the week</p>
</li>
<li><p>Major events of the week marked on corresponding day</p>
</li>
<li><p>Review of the previous week in a short form journal</p>
</li>
</ol>
<p>Also, one could also include something like a <a href="https://jacobzelko.com/03192020013347-bullet-journal-month">habit tracking system</a> for each week as well.</p>
<h3 id="preview">Preview</h3>
<p>Here is encompassed the first two points being:</p>
<ol>
<li><p>Major to-do&#39;s of the week</p>
</li>
<li><p>Major events of the week marked on corresponding day</p>
</li>
</ol>
<p>This is where you schedule each day of the week based on your schedule. One can use the <a href="https://jacobzelko.com/03192020050207-gtd-implementation">&quot;Next Actions&quot; and &quot;Waiting For&quot;</a> list from the <a href="https://jacobzelko.com/03192020045854-get-things-done">GTD framework</a> to plan out your to-do&#39;s in a much more structured and useful way.</p>
<h3 id="review">Review</h3>
<p>Here is where the last point of the layout comes in - a reflection in the form of a <a href="https://jacobzelko.com/03192020035441-bullet-journal-daily##Short-Form-Journaling-Symbols">short form journal</a>. This is meant to be a brief professional reflection on the week and to reflect on the:</p>
<ul>
<li><p>Wins for the week</p>
</li>
<li><p>What could have been better</p>
</li>
<li><p>How you are going to improve next week</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Weekly Planning in a Bullet Journal</em>. <a href="https://jacobzelko.com/03192020035337-bullet-journal-weekly">https://jacobzelko.com/03192020035337-bullet-journal-weekly</a>. March 19 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 19 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  GTD Weekly Review  ]]>
  </title>
  <link> https://jacobzelko.com/03192020050249-gtd-weekly-review/index.html </link>
  <guid> https://jacobzelko.com/03192020050249-gtd-weekly-review/index.html </guid>
  <description>
    <![CDATA[  How to conduct weekly reviews using GTD.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>GTD Weekly Review</h1>
<p><strong>Date:</strong> March 19 2020</p>
<p><strong>Summary:</strong> How to conduct weekly reviews using GTD.</p>
<p><strong>Keywords:</strong> ##zettel #review #weekly #model #productivity #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Each week, you should hold a 30 minute-ish weekly review to guarantee each project on the <a href="https://jacobzelko.com/03192020050207-gtd-implementation">project list</a> has at least one upcoming next action for the week. </p>
<p>Utilize a <a href="https://jacobzelko.com/03192020050346-trigger-list">trigger list</a> to help make sure you did not miss anything. The trigger list should be custom to whatever it is that you are working on or are responsible for.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>GTD Weekly Review</em>. <a href="https://jacobzelko.com/03192020050249-gtd-weekly-review">https://jacobzelko.com/03192020050249-gtd-weekly-review</a>. March 19 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Thu, 19 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Antifragility  ]]>
  </title>
  <link> https://jacobzelko.com/03172020033742-antifragility/index.html </link>
  <guid> https://jacobzelko.com/03172020033742-antifragility/index.html </guid>
  <description>
    <![CDATA[  An overview on Nassim Taleb&#39;s thoughts on Antifragility.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Antifragility</h1>
<p><strong>Date:</strong> March 17 2020</p>
<p><strong>Summary:</strong> An overview on Nassim Taleb&#39;s thoughts on Antifragility.</p>
<p><strong>Keywords:</strong> ##zettel #antifragile #philosophy #fragile #robust #model #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Examples from Taleb&#39;s Model</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Nassim Taleb coined the word &quot;antifragile&quot; to describe systems or objects that, rather than not adapting to an environment, adapts and improves over time as a function of perturbation found in a variable environment. </p>
<p>Antifragile systems or objects gain from disorder and thrives on volatility and variability within reason for that given system.</p>
<h3 id="examples_from_talebs_model">Examples from Taleb&#39;s Model</h3>
<ol>
<li><p>An antifragile system is not like a coffee mug - a coffee mug does not get stronger the more you use it but rather is at risk the more you use it. As a result, a coffee mug is <strong>fragile</strong>.</p>
</li>
<li><p>A cannonball however is not antifragile. You can shoot it out of a cannon, drop it, carry it, etc. Within reason, it is not going to change or adapt to the situation - it is <strong>robust</strong>.</p>
</li>
<li><p>A person however is <strong>antifragile</strong>. Before a person can lift a bale of hay, they must first carry the lamb to pasture. Meaning, a person can adapt and change themselves to fit to the situation at hand - though, not immediately. They can make these changes proactively or anticipate needs for a given situation and adapt accordingly.</p>
</li>
</ol>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Antifragility</em>. <a href="https://jacobzelko.com/03172020033742-antifragility">https://jacobzelko.com/03172020033742-antifragility</a>. March 17 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 17 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Raspberry Pi  ]]>
  </title>
  <link> https://jacobzelko.com/03102020061135-raspberry-pi/index.html </link>
  <guid> https://jacobzelko.com/03102020061135-raspberry-pi/index.html </guid>
  <description>
    <![CDATA[  A summary of tools, information, and resources related to the Raspberry Pi microcomputer.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Raspberry Pi</h1>
<p><strong>Date:</strong> March 10 2020</p>
<p><strong>Summary:</strong> A summary of tools, information, and resources related to the Raspberry Pi microcomputer.</p>
<p><strong>Keywords:</strong> ##summary ##computer ##raspberrypi ##technology #research #cheap #debian #archive</p>
<h1>Bibliography</h1>
<p>Not Available </p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<ul>
<li><p>MAC address is unique to the pi and not the SD card. One can find this information via the file located at <code>/sys/class/net/eth0/address</code>. Instead of eth0, if one uses wlan0 – we get MAC address for wireless connection. &#40;Chaitra Hegde&#41;</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Raspberry Pi</em>. <a href="https://jacobzelko.com/03102020061135-raspberry-pi">https://jacobzelko.com/03102020061135-raspberry-pi</a>. March 10 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 10 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  SARS-CoV-2  ]]>
  </title>
  <link> https://jacobzelko.com/03102020051547-sars-cov-2/index.html </link>
  <guid> https://jacobzelko.com/03102020051547-sars-cov-2/index.html </guid>
  <description>
    <![CDATA[  Gives an overview of the 2020 SARS-CoV-2 &#40;COVID19&#41; pandemic and what the disease is.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>SARS-CoV-2</h1>
<p><strong>Date:</strong> March 10 2020</p>
<p><strong>Summary:</strong> Gives an overview of the 2020 SARS-CoV-2 &#40;COVID19&#41; pandemic and what the disease is.</p>
<p><strong>Keywords:</strong> ##summary ##health #covid19 #publichealth #pandemic #globalhealth #health #healthcare  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>What is SARS-CoV-2?<ol><li>Symptoms</li><li><a href="03102020052237-covid19-dying"><strong>Risk of dying:</strong></a></li><li><a href="03102020053006-cdc-respiratory-preventions"><strong>Prevention Methods:</strong></a></li></ol></li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="what_is_sars-cov-2">What is SARS-CoV-2?</h3>
<p>The SARS-CoV-2 virus is a <a href="03102020054429-coronavirus-definition">betacoronavirus</a>, like MERS-CoV and SARS-CoV. All three of these viruses have their origins in bats. The sequences from U.S. patients are similar to the one that China initially posted, suggesting a likely single, recent emergence of this virus from an animal reservoir.</p>
<p>Early on, many of the patients at the epicenter of the outbreak in Wuhan, Hubei Province, China had some link to a large seafood and live animal market, suggesting animal-to-person spread. Later, a growing number of patients reportedly did not have exposure to animal markets, indicating person-to-person spread. Person-to-person spread was subsequently reported outside Hubei and in countries outside China, including in the United States. &#91;1&#93;</p>
<p>Currently, the World Health Organization has not classified this situation as a pandemic though this stance is highly contentious. &#91;2&#93;</p>
<p>UPDATE &#40;MARCH 11th&#41;:_ As of now, this situation is now classified a pandemic by the World Health Organization. &#91;3&#93;</p>
<p>Here is an image showing its transmission across the world:</p>
<p><img src="03102020050115-covid19-jhu-arcgis.jpg" alt="arcgis-sars" /></p>
<h4 id="symptoms">Symptoms</h4>
<p>The following symptoms may appear 2-14 days after exposure &#40;this is based on what has been seen previously as the incubation period of MERS-CoV viruses &#91;Middle East Respiratory Syndrome Coronavirus&#93;&#41; &#91;4&#93;:</p>
<ul>
<li><p>Fever</p>
</li>
<li><p>Cough</p>
</li>
<li><p>Shortness of breath</p>
</li>
</ul>
<h4 id="a_href03102020052237-covid19-dyingrisk_of_dying"><a href="03102020052237-covid19-dying"><strong>Risk of dying:</strong></a></h4>
<p>1 - 2&#37; is the current estimate though it could get higher. &#91;5&#93;</p>
<h4 id="a_href03102020053006-cdc-respiratory-preventionsprevention_methods"><a href="03102020053006-cdc-respiratory-preventions"><strong>Prevention Methods:</strong></a></h4>
<ul>
<li><p>Avoid close contact with people who are sick.</p>
</li>
<li><p>Avoid touching your eyes, nose, and mouth.</p>
</li>
<li><p>Stay home when you are sick.</p>
</li>
<li><p>Cover your cough or sneeze with a tissue, then throw the tissue in the trash.</p>
</li>
<li><p>Clean and disinfect frequently touched objects and surfaces using a regular household cleaning spray or wipe.</p>
</li>
<li><p>Wash your hands often with soap and water for at least 20 seconds, especially after going to the bathroom; before eating; and after blowing your nose, coughing, or sneezing.</p>
</li>
<li><p>If soap and water are not readily available, use an alcohol-based hand sanitizer with at least 60&#37; alcohol. Always wash hands with soap and water if hands are visibly dirty.</p>
</li>
</ul>
<p>&#91;6&#93;</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>SARS-CoV-2</em>. <a href="https://jacobzelko.com/03102020051547-sars-cov-2">https://jacobzelko.com/03102020051547-sars-cov-2</a>. March 10 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; CDC and CDC, “Coronavirus Disease 2019 &#40;COVID-19&#41; Situation Summary,” Mar. 09, 2020. https://www.cdc.gov/coronavirus/2019-ncov/summary.html &#40;accessed Mar. 10, 2020&#41;.</p>
<p>&#91;2&#93; “Statement on the second meeting of the International Health Regulations &#40;2005&#41; Emergency Committee regarding the outbreak of novel coronavirus &#40;2019-nCoV&#41;.” https://www.who.int/news-room/detail/30-01-2020-statement-on-the-second-meeting-of-the-international-health-regulations-&#40;2005&#41;-emergency-committee-regarding-the-outbreak-of-novel-coronavirus-&#40;2019-ncov&#41; &#40;accessed Mar. 10, 2020&#41;.</p>
<p>&#91;3&#93; “WHO Director-General’s opening remarks at the media briefing on COVID-19 - 11 March 2020.” https://www.who.int/dg/speeches/detail/who-director-general-s-opening-remarks-at-the-media-briefing-on-covid-19–-11-march-2020 &#40;accessed Mar. 15, 2020&#41;.</p>
<p>&#91;4&#93; CDC and CDC, “Coronavirus Disease 2019 &#40;COVID-19&#41; – Symptoms,” Feb. 29, 2020. https://www.cdc.gov/coronavirus/2019-ncov/about/symptoms.html &#40;accessed Mar. 10, 2020&#41;.</p>
<p>&#91;5&#93; M. Lipsitch, “Opinion | Why it’s so hard to pin down the risk of dying from coronavirus.” https://www.washingtonpost.com/opinions/2020/03/06/why-its-so-hard-pin-down-risk-dying-coronavirus/ &#40;accessed Mar. 10, 2020&#41;.</p>
<p>&#91;6&#93; CDC and CDC, “Coronavirus Disease 2019 &#40;COVID-19&#41; – Prevention &amp; Treatment,” Feb. 15, 2020. https://www.cdc.gov/coronavirus/2019-ncov/about/prevention-treatment.html &#40;accessed Mar. 10, 2020&#41;.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 10 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Coronavirus Definition  ]]>
  </title>
  <link> https://jacobzelko.com/03102020054429-coronavirus-definition/index.html </link>
  <guid> https://jacobzelko.com/03102020054429-coronavirus-definition/index.html </guid>
  <description>
    <![CDATA[  Note on what coronavirus is.  ]]>
  </description>  
  
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    <![CDATA[  
<h1>Coronavirus Definition</h1>
<p><strong>Date:</strong> March 10 2020</p>
<p><strong>Summary:</strong> Note on what coronavirus is.</p>
<p><strong>Keywords:</strong> ##zettel #health #coronavirus #disease #epidemiology  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Coronaviruses are a large family of viruses that are common in people and many different species of animals, including camels, cattle, cats, and bats. Rarely, animal coronaviruses can infect people and then spread between people such as with MERS-CoV, SARS-CoV, and now with this new virus &#40;named SARS-CoV-2&#41;.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Coronavirus Definition</em>. <a href="https://jacobzelko.com/03102020054429-coronavirus-definition">https://jacobzelko.com/03102020054429-coronavirus-definition</a>. March 10 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 10 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  Risk of Dying from COVID19  ]]>
  </title>
  <link> https://jacobzelko.com/03102020052237-covid19-dying/index.html </link>
  <guid> https://jacobzelko.com/03102020052237-covid19-dying/index.html </guid>
  <description>
    <![CDATA[  Note on the current fatality when acquiring COVID19.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Risk of Dying from COVID19</h1>
<p><strong>Date:</strong> March 10 2020</p>
<p><strong>Summary:</strong> Note on the current fatality when acquiring COVID19.</p>
<p><strong>Keywords:</strong> ##zettel #covid19 #health #disease #epidemiology  #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>Several estimates have suggested that the risk of dying, for those infected with covid-19 and showing its flu-like symptoms, is around 1 or 2 percent. Elderly adults have a considerably higher risk of both becoming infected and dying, as do people with compromised immune systems. The estimates might change as new data arrive, but the range of 1 to 2 percent for fatalities among the symptomatic seems to be the consensus for now. The overall fatality rate for people infected with covid-19 will be lower &quot;possibly much lower&quot; when we know how many people are infected but asymptomatic.</p>
<blockquote>
<p><em>Marc Lipsitch is a professor of epidemiology and director of the Center for Communicable Disease Dynamics at Harvard T.H. Chan School of Public Health.</em></p>
</blockquote>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Risk of Dying from COVID19</em>. <a href="https://jacobzelko.com/03102020052237-covid19-dying">https://jacobzelko.com/03102020052237-covid19-dying</a>. March 10 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 10 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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<item>
  <title>
    <![CDATA[  CDC Respiratory Disease Prevention  ]]>
  </title>
  <link> https://jacobzelko.com/03102020053006-cdc-respiratory-preventions/index.html </link>
  <guid> https://jacobzelko.com/03102020053006-cdc-respiratory-preventions/index.html </guid>
  <description>
    <![CDATA[  Note on generic methods on preventing respiratory infection approved by the CDC.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>CDC Respiratory Disease Prevention</h1>
<p><strong>Date:</strong> March 10 2020</p>
<p><strong>Summary:</strong> Note on generic methods on preventing respiratory infection approved by the CDC.</p>
<p><strong>Keywords:</strong> ##zettel #cdc #health #publichealth #disease #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<p>CDC always recommends everyday preventive actions to help prevent the spread of respiratory diseases, including:</p>
<ul>
<li><p>Avoid close contact with people who are sick.</p>
</li>
<li><p>Avoid touching your eyes, nose, and mouth.</p>
</li>
<li><p>Stay home when you are sick.</p>
</li>
<li><p>Cover your cough or sneeze with a tissue, then throw the tissue in the trash.</p>
</li>
<li><p>Clean and disinfect frequently touched objects and surfaces using a regular household cleaning spray or wipe.</p>
</li>
<li><p>Wash your hands often with soap and water for at least 20 seconds, especially after going to the bathroom; before eating; and after blowing your nose, coughing, or sneezing.</p>
</li>
<li><p>If soap and water are not readily available, use an alcohol-based hand sanitizer with at least 60&#37; alcohol. Always wash hands with soap and water if hands are visibly dirty.</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>CDC Respiratory Disease Prevention</em>. <a href="https://jacobzelko.com/03102020053006-cdc-respiratory-preventions">https://jacobzelko.com/03102020053006-cdc-respiratory-preventions</a>. March 10 2020.</p>
<h2 id="references">References</h2>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 10 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  WFDB Record  ]]>
  </title>
  <link> https://jacobzelko.com/03102020061429-wfdb-format/index.html </link>
  <guid> https://jacobzelko.com/03102020061429-wfdb-format/index.html </guid>
  <description>
    <![CDATA[  Overview of the Waveform Database &#40;WFDB&#41; record format  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>WFDB Record</h1>
<p><strong>Date:</strong> March 10 2020</p>
<p><strong>Summary:</strong> Overview of the Waveform Database &#40;WFDB&#41; record format</p>
<p><strong>Keywords:</strong> ##summary #wfdb #dataformat #storage #healthcare #opensource #standard  #archive</p>
<h1>Bibliography</h1>
<p>Not Available </p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Overview</li><li>How It Works</li><li>Example Application - ECG Data</li><li>Miscellaneous Notes</li></ol></li><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h3 id="overview">Overview</h3>
<p>The Waveform Database &#40;WFDB&#41; Library is a record management system to handle already existing databases - it itself is not a database but a collection of tools to handle databases that follow the WFDB format. &#91;1&#93; Furthermore, WFDB can be used for viewing, analyzing, and creating recordings of physiological signals &#91;2&#93;.</p>
<h3 id="how_it_works">How It Works</h3>
<p>The way that the WFDB record format works is that it utilizes &#91;pg 1, @moodyWFDBProgrammerGuide2019&#93;:</p>
<ul>
<li><p><strong>Header Files</strong> to specify the characteristics of a signal &#40;sampling frequency, etc.&#41;</p>
</li>
<li><p><strong>Annotation Files</strong> to record annotations corresponding to a signal &#40;generally kept in time with the rest of the signal&#41;</p>
</li>
</ul>
<h3 id="example_application_-_ecg_data">Example Application - ECG Data</h3>
<p>For example, when working with ECG data, the format utilizes the header and annotation files as follows &#91;pg 2 - 3, @moodyWFDBProgrammerGuide2019&#93;:</p>
<ul>
<li><p><strong>Header Files</strong> - could contain information about lead count, calibration format, etc.</p>
</li>
<li><p><strong>Annotation Files</strong> - could contain other information such as beat positions.</p>
</li>
</ul>
<h3 id="miscellaneous_notes">Miscellaneous Notes</h3>
<ul>
<li><p>WFDB is considered a standard data format within the research world, and has found application in industry as well.</p>
</li>
<li><p>The WFDB format is generally used for ECG records - however, it can extend to other data formats.</p>
</li>
<li><p>A possible alternative to the WFDB record format is the European Data Format&#43; &#40;EDF&#43;&#41; &#91;see @garciamartinezLoadingPlottingFiltering2017 for more information&#93;.</p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>WFDB Record</em>. <a href="https://jacobzelko.com/03102020061429-wfdb-format">https://jacobzelko.com/03102020061429-wfdb-format</a>. March 10 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; G. Moody, “WFDB Programmer’s Guide,” Mar. 08, 2019. https://www.physionet.org/physiotools/wpg/wpg.pdf &#40;accessed Mar. 17, 2020&#41;.</p>
<p>&#91;2&#93; C. A. García Martínez et al., “Loading, Plotting, and Filtering RR Intervals,” in Heart Rate Variability Analysis with the R package RHRV, Cham: Springer International Publishing, 2017, pp. 15–28. doi: 10.1007/978-3-319-65355-6_2.</p>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Tue, 10 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
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</item>

<item>
  <title>
    <![CDATA[  Open Wearables Initiative  ]]>
  </title>
  <link> https://jacobzelko.com/03102020004043-open-wearables-initiative/index.html </link>
  <guid> https://jacobzelko.com/03102020004043-open-wearables-initiative/index.html </guid>
  <description>
    <![CDATA[  OWEAR is a collaboration designed to promote the effective use of sensor-generated measures of health in clinical research through the open sharing and benchmarking of algorithms and datasets.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Open Wearables Initiative</h1>
<p><strong>Date:</strong> March 10 2020</p>
<p><strong>Summary:</strong> OWEAR is a collaboration designed to promote the effective use of sensor-generated measures of health in clinical research through the open sharing and benchmarking of algorithms and datasets.</p>
<p><strong>Keywords:</strong> ##zettel #opensource #dataset #research #healthcare #technology #wearables #health #archive</p>
<h1>Bibliography</h1>
<p>Not Available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li>How To Cite</li><li>References</li><li>Discussion: </li></ol></div>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Open Wearables Initiative</em>. <a href="https://jacobzelko.com/03102020004043-open-wearables-initiative">https://jacobzelko.com/03102020004043-open-wearables-initiative</a>. March 10 2020.</p>
<h2 id="references">References</h2>
<p>&#91;1&#93; A. C. T. Editors, “The Open Wearables Initiative Soliciting Algorithms and Datasets.” http://www.appliedclinicaltrialsonline.com/open-wearables-initiative-soliciting-algorithms-and-datasets-0 &#40;accessed Mar. 10, 2020&#41;.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Tue, 10 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  Education as a Spectrum  ]]>
  </title>
  <link> https://jacobzelko.com/03092020022908-education-spectrum/index.html </link>
  <guid> https://jacobzelko.com/03092020022908-education-spectrum/index.html </guid>
  <description>
    <![CDATA[  The idea that there is no clear delineation of knowledge in reality.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>Education as a Spectrum</h1>
<p><strong>Date:</strong> March 9 2020</p>
<p><strong>Summary:</strong> The idea that there is no clear delineation of knowledge in reality.</p>
<p><strong>Keywords:</strong> ##zettel #education #knowledge #science #archive</p>
<h1>Bibliography</h1>
<p>Not available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Kuhnian Reasoning on Non-Linearity of Education</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<p>My best friend Wesley Samples believes that education – and for that matter, knowledge – falls more along a spectrum than in discrete categories &#40;such as Mathematics and Biology&#41;. One can look at biology and find the idea of the golden ratio repeated across nature &#91;1&#93;, &#91;2&#93;; example being the <em>Aeonium Tabuliforme</em>:</p>
<p><img src="03102020015817-aeonium-tabuliforme.jpg" alt="saucer plant" /></p>
<p>There is the idea of the creature being a biological entity motivating questions such as</p>
<ul>
<li><p>Why does the Nautilus have a shell like this?</p>
</li>
<li><p>What function does it serve?</p>
</li>
</ul>
<h3 id="kuhnian_reasoning_on_non-linearity_of_education">Kuhnian Reasoning on Non-Linearity of Education</h3>
<p>Beyond Kuhn&#39;s general <a href="https://jacobzelko.com/05152022174848-structure-revolutions">musing in the _Structure of Scientific Revolutions</a>, his thought can also be linked to the notion that science and education is not linear.</p>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>Education as a Spectrum</em>. <a href="https://jacobzelko.com/03092020022908-education-spectrum">https://jacobzelko.com/03092020022908-education-spectrum</a>. March 9 2020.</p>
<h2 id="references">References:</h2>
<p>&#91;1&#93; Golden ratio discovered in a quantum world. Eurekalert.org, 2010.Available: http://www.eurekalert.org/pub_releases/2010-01/haog-grd010510.php</p>
<p>&#91;2&#93; R. Padovan, “Proportion: Science, Philosophy, Architecture,” Nexus Netw. J., vol. 4, no. 1, pp. 113–122, 2002, doi: 10.1007/s00004-001-0008-7.</p>
<h2 id="discussion">Discussion: </h2>
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  </content:encoded>
    
  <pubDate>Mon, 09 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
</item>

<item>
  <title>
    <![CDATA[  The Health Index, Jacob 😷  ]]>
  </title>
  <link> https://jacobzelko.com/03092020025554-health-index/index.html </link>
  <guid> https://jacobzelko.com/03092020025554-health-index/index.html </guid>
  <description>
    <![CDATA[  Index of topics pertaining to health, healthcare, public health, and other domains.  ]]>
  </description>  
  
  <content:encoded>
    <![CDATA[  
<h1>The Health Index, Jacob 😷</h1>
<p><strong>Date:</strong> March 9 2020</p>
<p><strong>Summary:</strong> Index of topics pertaining to health, healthcare, public health, and other domains.</p>
<p><strong>Keywords:</strong> ##index ##health ##healthcare ##publichealth #pandemic #epidemiology #archive</p>
<h1>Bibliography</h1>
<p>Not available</p>
<h1>Table of Contents</h1>
<div class="franklin-toc"><ol><li><ol><li>Thoughts about Health</li><li>Diseases</li></ol></li><li>How To Cite</li><li>References:</li><li>Discussion: </li></ol></div>
<h3 id="thoughts_about_health">Thoughts about Health</h3>
<ul>
<li><p><a href="03092020022148-health-spectrum">Health as a Spectrum</a></p>
</li>
</ul>
<hr />
<h3 id="diseases">Diseases</h3>
<ul>
<li><p><a href="03102020051547-sars-cov-2">SARS-CoV-2</a></p>
</li>
</ul>
<h2 id="how_to_cite">How To Cite</h2>
<p>Zelko, Jacob. <em>The Health Index, Jacob 😷</em>. <a href="https://jacobzelko.com/03092020025554-health-index">https://jacobzelko.com/03092020025554-health-index</a>. March 9 2020.</p>
<h2 id="references">References:</h2>
<h2 id="discussion">Discussion: </h2>
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  <pubDate>Mon, 09 Mar 2020 00:00:00 +0000</pubDate>  
  
  
  <atom:author>
    <atom:name>Jacob Zelko</atom:name>
  </atom:author>
        
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